Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 1.1e-167 593.2 289 100.0
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 2.1e-142 509.2 302 83.8
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 2.7e-142 508.8 300 84.0
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 4.6e-142 508.1 300 84.0
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 6.6e-141 504.2 299 82.9
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 1.1e-140 503.4 306 81.0
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 6.8e-138 494.2 299 80.6
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 1.2e-137 493.4 299 81.3
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 1.5e-137 493.0 302 80.5
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 6.4e-136 487.6 300 80.3
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 8.3e-136 487.3 300 78.0
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 4.1e-135 485.0 300 80.0
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 2.1e-134 482.6 300 80.0
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 2.7e-134 482.3 300 78.3
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 7.8e-134 480.7 300 76.7
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 1.0e-133 480.3 300 78.7
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 5.1e-133 478.0 300 79.3
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 6.6e-133 477.6 301 78.4
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 6.6e-133 477.6 299 78.3
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 8.6e-133 477.2 300 79.0
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 8.6e-133 477.2 299 78.3
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 1.1e-132 476.9 300 76.7
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 1.2e-131 473.4 300 77.0
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 2.1e-131 472.6 298 76.8
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 3.6e-131 471.9 300 75.7
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 3.6e-131 471.9 299 78.6
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 1.1e-130 470.3 307 75.9
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 1.1e-130 470.3 299 76.3
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 1.8e-130 469.5 300 76.7
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 4.0e-130 468.4 299 77.6
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.5e-129 466.5 299 77.3
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 2.6e-129 465.7 300 75.7
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 2.6e-129 465.7 303 75.9
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 9.9e-129 463.8 299 76.9
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 1.3e-128 463.4 330 72.1
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 2.2e-128 462.6 299 75.3
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 2.9e-128 462.2 299 75.3
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 2.9e-128 462.2 300 76.7
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 4.9e-128 461.5 300 76.7
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 6.4e-128 461.1 288 78.5
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 1.1e-127 460.3 299 76.3
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 2.4e-127 459.1 299 74.9
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 4.2e-127 458.4 299 75.3
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 4.2e-127 458.4 299 75.3
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 5.4e-127 458.0 298 75.2
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 5.4e-127 458.0 301 76.1
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 7.1e-127 457.6 301 76.1
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 7.1e-127 457.6 301 76.1
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 1.6e-126 456.4 300 75.0
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 3.5e-126 455.3 300 76.7
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 4.6e-126 454.9 300 75.0
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 5.1e-125 451.4 300 76.0
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 6.6e-125 451.1 299 73.6
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 1.1e-124 450.3 301 75.4
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 1.5e-124 449.9 299 73.2
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 5.6e-124 448.0 305 75.4
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 1.2e-123 446.8 300 74.0
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 2.1e-123 446.0 312 71.8
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 2.1e-123 446.0 299 74.6
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 1.1e-122 443.7 302 73.2
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 1.1e-122 443.7 298 74.5
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 2.4e-122 442.6 298 71.5
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 4.0e-122 441.8 298 73.8
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 6.9e-122 441.0 300 69.7
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.5e-121 439.9 296 73.6
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 2.6e-121 439.1 297 69.7
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 1.3e-120 436.8 298 70.5
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 1.3e-120 436.8 299 73.2
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 1.7e-120 436.4 326 69.9
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 2.2e-120 436.0 283 77.0
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 8.4e-120 434.1 283 73.9
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 7.1e-119 431.0 300 73.0
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 2.3e-117 426.0 298 70.5
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 2.5e-116 422.5 319 67.4
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 1.8e-114 416.4 258 76.7
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 3.1e-114 415.6 333 65.8
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 4.0e-114 415.2 318 65.4
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 9.0e-114 414.1 304 69.1
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 7.6e-113 411.0 297 69.4
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 1.7e-112 409.8 283 70.0
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 4.9e-112 408.3 266 73.7
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 1.1e-111 407.1 300 66.3
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 4.2e-111 405.2 297 68.7
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 5.4e-111 404.8 301 65.8
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 9.3e-111 404.1 301 66.1
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 3.5e-110 402.1 302 66.9
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 6.0e-110 401.4 300 65.3
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 6.0e-110 401.4 270 73.0
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 1.3e-109 400.2 309 65.7
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 2.3e-109 399.4 300 65.3
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 3.0e-109 399.1 301 65.1
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 3.9e-109 398.7 300 64.3
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 5.1e-109 398.3 299 64.5
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 8.7e-109 397.5 296 67.2
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 1.9e-108 396.4 300 65.0
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 2.5e-108 396.0 301 64.8
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 2.1e-107 392.9 300 64.7
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 3.7e-107 392.1 284 71.1
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 5.3e-106 388.3 252 70.6
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 6.9e-106 387.9 298 64.8
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 1.3e-104 383.6 308 63.3
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 2.2e-104 382.9 270 69.6
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 2.9e-104 382.5 303 62.7
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 3.8e-104 382.1 244 75.0
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 4.9e-104 381.7 308 63.0
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 6.4e-104 381.3 303 62.7
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 2.3e-101 372.9 251 71.3
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 5.1e-101 371.7 299 63.5
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 2.1e-99 366.3 297 63.0
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 6.2e-99 364.8 297 63.0
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 5.3e-98 361.7 298 61.7
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 6.9e-98 361.3 302 60.3
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 5.8e-97 358.2 294 61.9
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 2.2e-96 356.3 294 61.9
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 2.1e-94 349.7 300 64.3
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 9.0e-90 334.3 277 62.5
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 4.2e-87 325.5 261 59.4
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 5.1e-85 318.5 193 76.2
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 6.7e-85 318.2 192 79.7
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 2.0e-84 316.6 308 55.5
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 4.8e-83 312.0 302 56.0
Cc07_g20540 Coffea canephora HOM05D004012 ORTHO05D004752 3.6e-70 269.2 235 58.3
QL10p034897 Quercus lobata HOM05D004012 ORTHO05D004752 3.5e-65 252.7 145 76.6
Cpa.g.sc138.55 Carica papaya HOM05D004012 ORTHO05D004752 4.5e-65 252.3 145 77.2
Nitab4.5_0000064g0100 Nicotiana tabacum HOM05D004012 ORTHO05D004752 3.8e-64 249.2 177 75.1
Nitab4.5_0005261g0020 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.9e-63 246.9 156 82.7
Solyc04g024510.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 2.1e-62 243.4 157 81.5
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 2.7e-62 243.0 193 61.7
Peaxi162Scf00621g00412 Petunia axillaris HOM05D004012 ORTHO05D004752 4.7e-62 242.3 145 76.6
Peaxi162Scf00621g00413 Petunia axillaris HOM05D004012 ORTHO05D004752 4.7e-62 242.3 155 81.3
Nitab4.5_0000064g0090 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.0e-61 241.1 145 77.2
PGSC0003DMG401004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 1.0e-61 241.1 144 77.8
Solyc04g024500.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 1.8e-61 240.4 145 76.6
Ah.06g188310 Amaranthus hybridus HOM05D004012 ORTHO05D004752 3.0e-61 239.6 144 73.6
Nitab4.5_0005261g0010 Nicotiana tabacum HOM05D004012 ORTHO05D004752 4.4e-60 235.7 145 77.2
Haze_19373 Corylus avellana HOM05D004012 ORTHO05D004752 4.8e-59 232.3 157 78.3
Oeu036288.1 Olea europaea HOM05D004012 ORTHO05D004752 4.8e-59 232.3 145 70.3
SEGI_14103 Sequoiadendron giganteum HOM05D004012 ORTHO05D004752 2.7e-57 226.5 156 75.6
HPP92_005645 Vanilla planifolia HOM05D004012 ORTHO05D004752 2.9e-56 223.0 145 80.7
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 2.7e-54 216.5 302 45.7
Lju41A56G29 Lonicera japonica HOM05D004012 ORTHO05D004752 3.6e-54 216.1 172 63.4
SHI03102 Sapria himalayana HOM05D004012 ORTHO05D004752 5.7e-52 208.8 147 63.3
Cre17.g726800 Chlamydomonas reinhardtii HOM05D004012 ORTHO05D004752 7.7e-49 198.4 284 44.0
PGSC0003DMG402004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 2.9e-48 196.4 133 79.7
Os12g0197900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 1.1e-47 194.5 141 72.3
Lsat_1_v5_gn_2_19540 Lactuca sativa HOM05D004012 ORTHO05D004752 5.5e-47 192.2 182 58.2
THA.LOC104799828 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 5.7e-44 182.2 184 56.0
QL10p034885 Quercus lobata HOM05D004012 ORTHO05D000004 8.6e-40 168.3 103 81.6
Zm00001eb138450 Zea mays HOM05D004012 ORTHO05D004752 8.6e-40 168.3 147 54.4
DCAR_015558 Daucus carota HOM05D004012 ORTHO05D004752 1.9e-39 167.2 122 71.3
BcaNung06869 Brassica carinata HOM05D004012 ORTHO05D004752 5.8e-36 155.6 132 67.4
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 1.7e-32 144.1 192 46.9
HPP92_005679 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.5e-31 141.0 160 50.6
Cpa.g.sc138.54 Carica papaya HOM05D004012 ORTHO05D004752 8.0e-30 135.2 99 75.8
Haze_27454 Corylus avellana HOM05D004012 ORTHO05D004752 5.2e-29 132.5 125 52.0
SHI03103 Sapria himalayana HOM05D004012 ORTHO05D004752 1.3e-27 127.9 168 46.4
Lju41A56T30 Lonicera japonica HOM05D004012 ORTHO05D004752 5.4e-26 122.5 145 49.0
HPP92_005646 Vanilla planifolia HOM05D004012 ORTHO05D004752 5.1e-24 115.9 96 53.1
MCO14G229 Micromonas commoda HOM05D004012 ORTHO05D004752 1.2e-17 94.7 215 32.1
Oeu046377.1 Olea europaea HOM05D004012 ORTHO05D004752 1.2e-14 84.7 47 89.4
PSO761G0569 Papaver somniferum HOM05D004012 ORTHO05D004752 1.5e-12 77.8 57 64.9
Ciclev10006318m.g Citrus clementina HOM05D004012 ORTHO05D004752 2.9e-11 73.6 45 82.2
A03p08840 Brassica napus HOM05D004012 ORTHO05D004752 8.4e-11 72.0 59 59.3
PRCOL_00001851 Prasinoderma coloniale HOM05D004012 ORTHO05D004752 4.2e-10 69.7 257 26.1


User provided reference genes

Program Settings