Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A815T22 Lonicera japonica HOM05D006833 ORTHO05D006885 0.0e+00 2276.5 1159 100.0
Dinv35492 Davidia involucrata HOM05D006833 ORTHO05D006885 0.0e+00 1140.2 1150 56.3
Dinv05521 Davidia involucrata HOM05D006833 ORTHO05D006885 8.1e-307 1057.4 1141 53.8
Actinidia17104 Actinidia chinensis HOM05D006833 ORTHO05D006885 1.2e-294 1016.9 1159 52.2
CSS0009542 Camellia sinensis var. sinensis HOM05D006833 ORTHO05D006885 2.5e-287 992.6 1179 50.9
vmacro13063 Vaccinium macrocarpon HOM05D006833 ORTHO05D006885 1.4e-266 923.7 1162 48.6
Cfa014175 Carpinus fangiana HOM05D006833 ORTHO05D006885 1.9e-263 913.3 1176 48.1
TAR381G0829 Trochodendron aralioides HOM05D006833 ORTHO05D006885 1.1e-258 897.5 1231 46.7
Haze_22899 Corylus avellana HOM05D006833 ORTHO05D006885 1.2e-257 894.0 1174 47.0
Rhsim06G0000300 Rhododendron simsii HOM05D001427 ORTHO05D006885 4.2e-255 885.6 1251 45.5
CiPaw.07G129500 Carya illinoinensis HOM05D006833 ORTHO05D006885 8.0e-246 854.7 1166 46.4
DCAR_009847 Daucus carota HOM05D006833 ORTHO05D006885 3.2e-239 832.8 1187 44.6
QL02p016503 Quercus lobata HOM05D006833 ORTHO05D006885 1.3e-232 810.8 1234 42.9
Ciclev10000043m.g Citrus clementina HOM05D006833 ORTHO05D006885 4.9e-219 765.8 1207 42.7
Atru.chr4.1658 Acer truncatum HOM05D006833 ORTHO05D006885 2.0e-217 760.4 1281 41.1
Manes.05G113300 Manihot esculenta HOM05D006833 ORTHO05D006885 5.0e-216 755.7 1203 42.4
Thecc.08G096800 Theobroma cacao HOM05D006833 ORTHO05D006885 9.5e-215 751.5 1203 41.9
Prupe.2G042400 Prunus persica HOM05D006833 ORTHO05D006885 1.3e-211 741.1 1068 43.9
TWI34G1134 Tripterygium wilfordii HOM05D006833 ORTHO05D006885 5.1e-208 729.2 1144 43.1
Potri.002G001000 Populus trichocarpa HOM05D006833 ORTHO05D006885 1.6e-206 724.2 1239 40.0
Potri.005G260100 Populus trichocarpa HOM05D006833 ORTHO05D006885 3.6e-206 723.0 1182 41.4
FAN18G3902 Fragaria x ananassa HOM05D006833 ORTHO05D006885 8.4e-203 711.8 1146 41.4
FAN04G0199 Fragaria x ananassa HOM05D006833 ORTHO05D006885 3.2e-202 709.9 1146 40.9
FvH4_5g26810 Fragaria vesca HOM05D006833 ORTHO05D006885 7.1e-202 708.8 1146 41.2
TWI60G0692 Tripterygium wilfordii HOM05D006833 ORTHO05D006885 2.7e-201 706.8 1089 42.4
Gohir.A02G087001 Gossypium hirsutum HOM05D006833 ORTHO05D006885 4.6e-201 706.1 1136 41.9
RcHm_v2.0_Chr7g0217731 Rosa chinensis HOM05D006833 ORTHO05D006885 4.6e-201 706.1 1161 40.8
GSVIVG01006875001 Vitis vinifera HOM05D006833 ORTHO05D006885 4.6e-201 706.1 1035 44.3
MD02G1278400 Malus domestica HOM05D006833 ORTHO05D006885 2.3e-200 703.7 1128 42.4
FAN13G2656 Fragaria x ananassa HOM05D006833 ORTHO05D006885 1.9e-199 700.7 1160 40.3
FAN08G1517 Fragaria x ananassa HOM05D006833 ORTHO05D006885 6.2e-198 695.7 1161 40.2
Gohir.D02G101700 Gossypium hirsutum HOM05D006833 ORTHO05D006885 6.8e-197 692.2 1137 40.7
Nn6g31535 Nelumbo nucifera HOM05D006833 ORTHO05D006885 8.9e-197 691.8 1134 41.8
MBI01_g32850_MAGBIO Magnolia biondii HOM05D006833 ORTHO05D006885 4.4e-196 689.5 1238 39.8
Duzib093G1949 Durio zibethinus HOM05D006833 ORTHO05D006885 6.4e-195 685.6 1139 40.6
ClCG08G009140 Citrullus lanatus HOM05D006833 ORTHO05D006885 1.4e-194 684.5 1189 40.1
Peaxi162Scf00675g00049 Petunia axillaris HOM05D006833 ORTHO05D006885 3.2e-194 683.3 1301 38.2
CsaV3_6G035990 Cucumis sativus L. HOM05D006833 ORTHO05D006885 5.4e-194 682.6 1180 40.9
Gorai.005G115300 Gossypium raimondii HOM05D006833 ORTHO05D006885 7.1e-194 682.2 1132 40.7
ECA233G4915 Erigeron canadensis HOM05D006833 ORTHO05D006885 2.3e-192 677.2 1041 41.6
Glyma.09G052200 Glycine max HOM05D006833 ORTHO05D006885 2.4e-189 667.2 1161 40.9
Oeu000732.1 Olea europaea HOM05D006833 ORTHO05D006885 3.4e-188 663.3 1216 37.3
Glyma.15G158500 Glycine max HOM05D006833 ORTHO05D006885 6.4e-187 659.1 1155 40.5
Sabra05G0201300 Salix brachista HOM05D006833 ORTHO05D006885 1.9e-186 657.5 1180 40.1
Migut.C00328 Erythranthe guttata HOM05D006833 ORTHO05D006885 7.1e-186 655.6 1071 40.0
Phvul.009G241600 Phaseolus vulgaris HOM05D006833 ORTHO05D006885 1.3e-184 651.4 1157 40.2
arahy.Tifrunner.gnm1.ann1.36ZQJX Arachis hypogaea HOM05D006833 ORTHO05D006885 6.6e-184 649.0 1168 39.3
MSTRG.24887 Avicennia marina HOM05D006833 ORTHO05D006885 8.7e-184 648.7 1086 40.6
Lj6g0016974 Lotus japonicus HOM05D006833 ORTHO05D006885 1.9e-183 647.5 1163 40.3
Medtr2g036060 Medicago truncatula HOM05D006833 ORTHO05D006885 3.3e-183 646.7 1115 38.8
SalBow7G3917 Salvia bowleyana HOM05D006833 ORTHO05D006885 7.4e-183 645.6 1100 40.3
Cc10_g00060 Coffea canephora HOM05D006833 ORTHO05D006885 9.6e-183 645.2 1165 38.3
VMungo1309G0756 Vigna mungo HOM05D006833 ORTHO05D006885 2.6e-180 637.1 1153 38.9
Sabra02G0000900 Salix brachista HOM05D001427 ORTHO05D006885 7.6e-180 635.6 1425 34.3
Lalb_Chr15g0083831 Lupinus albus HOM05D006833 ORTHO05D006885 3.2e-178 630.2 1175 39.0
Sc08g0002330 Simmondsia chinensis HOM05D006833 ORTHO05D006885 5.5e-178 629.4 1186 37.9
Cpa.g.sc36.86 Carica papaya HOM05D006833 ORTHO05D006885 1.2e-177 628.2 1432 34.2
Aqoxy5G00920 Aquilegia oxysepala HOM05D006833 ORTHO05D006885 1.6e-177 627.9 1299 36.5
TPR.G1724 Trifolium pratense HOM05D006833 ORTHO05D006885 4.6e-177 626.3 1148 39.8
arahy.Tifrunner.gnm1.ann1.F7NAU0 Arachis hypogaea HOM05D006833 ORTHO05D006885 7.9e-177 625.5 1162 39.0
COL.COLO4_16220 Corchorus olitorius HOM05D006833 ORTHO05D006885 8.7e-176 622.1 1106 38.4
HanXRQChr08g0226151 Helianthus annuus HOM05D006833 ORTHO05D006885 5.3e-173 612.8 1040 40.3
SGA_v2.0_scaffold161G37836 Striga asiatica HOM05D006833 ORTHO05D006885 1.7e-171 607.8 1112 39.3
Ca_02003_v3 Cicer arietinum L. HOM05D006833 ORTHO05D006885 4.2e-170 603.2 1068 40.4
Lalb_Chr18g0052171 Lupinus albus HOM05D006833 ORTHO05D006885 1.6e-169 601.3 1121 38.0
PGR083G0876 Punica granatum HOM05D006833 ORTHO05D006885 1.1e-167 595.1 1205 36.2
Hund06168 Selenicereus undatus HOM05D006833 ORTHO05D006885 3.8e-163 580.1 1241 36.3
Nitab4.5_0000220g0010 Nicotiana tabacum HOM05D006833 ORTHO05D006885 2.5e-162 577.4 1338 34.3
Solyc01g006880.4 Solanum lycopersicum HOM05D006833 ORTHO05D006885 4.6e-161 573.2 1600 30.6
Sopen01g002870 Solanum pennellii HOM05D006833 ORTHO05D006885 8.7e-160 568.9 1598 30.5
CANSAT25G3285 Cannabis sativa HOM05D006833 ORTHO05D006885 3.7e-158 563.5 1264 35.6
Eucgr.F01958 Eucalyptus grandis HOM05D006833 ORTHO05D006885 7.7e-156 555.8 1159 35.9
Psat1g149680 Pisum sativum HOM05D006833 ORTHO05D006885 1.5e-151 541.6 1257 34.5
Hma1.2p1_0493F.1_g165130 Hydrangea macrophylla HOM05D006833 ORTHO05D006885 7.4e-151 539.3 579 52.8
PSO170G6410 Papaver somniferum HOM05D006833 ORTHO05D006885 7.7e-148 529.3 1300 32.7
PSO017G2707 Papaver somniferum HOM05D006833 ORTHO05D006885 1.3e-147 528.5 1328 32.4
Lsat_1_v5_gn_8_2261 Lactuca sativa HOM05D006833 ORTHO05D006885 1.4e-144 518.5 1104 36.1
Ah.01g023710 Amaranthus hybridus HOM05D006833 ORTHO05D006885 1.3e-142 511.9 1191 33.2
THA.LOC104801650 Tarenaya hassleriana HOM05D006833 ORTHO05D006885 3.7e-142 510.4 1302 32.6
EL10Ac9g21250 Beta vulgaris HOM05D006833 ORTHO05D006885 4.5e-140 503.4 1175 34.6
MELO3C026511.2 Cucumis melo HOM05D006833 ORTHO05D006885 3.8e-139 500.4 904 38.4
Nitab4.5_0007430g0010 Nicotiana tabacum HOM05D006833 ORTHO05D006885 1.1e-138 498.8 1094 35.7
Sed0005718 Sechium edule HOM05D006833 ORTHO05D006885 1.2e-137 495.4 1437 31.0
HPP92_019647 Vanilla planifolia HOM05D006833 ORTHO05D006885 6.7e-136 489.6 1143 33.7
CAN.G911.31 Capsicum annuum HOM05D006833 ORTHO05D006885 1.2e-132 478.8 1620 29.8
Carub.0008s0676 Capsella rubella HOM05D006833 ORTHO05D006885 1.7e-126 458.4 1245 31.6
BcaB07g31077 Brassica carinata HOM05D006833 ORTHO05D006885 9.1e-125 452.6 1231 31.8
Thhalv10003132m.g Eutrema salsugineum HOM05D006833 ORTHO05D006885 2.2e-123 448.0 1236 31.4
BcaC04g21996 Brassica carinata HOM05D006833 ORTHO05D006885 5.0e-123 446.8 1198 31.3
Aa31LG9G12550 Aethionema arabicum HOM05D006833 ORTHO05D006885 6.5e-123 446.4 1261 32.0
BolC9t55397H Brassica oleracea HOM05D006833 ORTHO05D006885 5.5e-122 443.4 1204 31.8
AT5G42400 Arabidopsis thaliana HOM05D006833 ORTHO05D006885 2.3e-120 438.0 1267 31.9
AL8G19090 Arabidopsis lyrata HOM05D006833 ORTHO05D006885 5.2e-120 436.8 1274 30.8
BraA09t37578Z Brassica rapa HOM05D006833 ORTHO05D006885 8.8e-120 436.0 1250 30.8
ATR0605G021 Amborella trichopoda HOM05D006833 ORTHO05D006885 1.2e-119 435.6 1279 31.4
C09p25030 Brassica napus HOM05D006833 ORTHO05D006885 1.2e-119 435.6 1248 31.3
A09p19670 Brassica napus HOM05D006833 ORTHO05D006885 9.8e-119 432.6 1232 30.9
AUR62011705 Chenopodium quinoa HOM05D006833 ORTHO05D006885 7.5e-111 406.4 1453 28.0
AUR62012925 Chenopodium quinoa HOM05D006833 ORTHO05D006885 7.5e-111 406.4 1333 29.5
Os12g0613200 Oryza sativa ssp. japonica HOM05D000590 ORTHO05D006885 2.3e-96 358.2 1115 29.1
Zm00001eb406010 Zea mays HOM05D006833 ORTHO05D006885 1.2e-95 355.9 1130 29.5
CDE06G0375 Ceratophyllum demersum HOM05D006833 ORTHO05D006885 1.4e-93 349.0 894 31.7
MD07G1046400 Malus domestica HOM05D006833 ORTHO05D006885 3.6e-89 334.3 627 37.5
CARHR285110 Cardamine hirsuta HOM05D006833 ORTHO05D006885 6.2e-81 307.0 765 32.4
CDE08G1215 Ceratophyllum demersum HOM05D006833 ORTHO05D006885 2.4e-80 305.1 585 35.0
Sp7g08030 Schrenkiella parvula HOM05D006833 ORTHO05D006885 1.5e-79 302.4 991 29.8
unitig_46.g17973 Utricularia gibba HOM05D006833 ORTHO05D006885 1.1e-74 286.2 1058 27.9
SEGI_04349 Sequoiadendron giganteum HOM05D000590 ORTHO05D006885 1.1e-72 279.6 1229 26.9
CDE08G0754 Ceratophyllum demersum HOM05D000590 ORTHO05D006885 6.4e-62 243.8 489 39.3
MD07G1046500 Malus domestica HOM05D006833 ORTHO05D006885 5.6e-58 230.7 223 57.0
SHI07934 Sapria himalayana HOM05D006833 ORTHO05D006885 1.0e-46 193.4 162 62.3
Actinidia08364 Actinidia chinensis HOM05D006833 ORTHO05D006885 4.4e-34 151.4 267 42.7
SHI07931 Sapria himalayana HOM05D006833 ORTHO05D006885 1.0e-30 140.2 218 36.2
Actinidia08363 Actinidia chinensis HOM05D006833 ORTHO05D006885 6.5e-30 137.5 222 41.0
Psat5g081960 Pisum sativum HOM05D002713 ORTHO05D008299 8.8e-27 127.1 84 64.3
Pp3c13_4470 Physcomitrium patens HOM05D000590 ORTHO05D006885 2.8e-25 122.1 127 55.1
Mapoly0001s0118 Marchantia polymorpha HOM05D000590 ORTHO05D006885 1.1e-24 120.2 154 48.1
Psat5g082120 Pisum sativum HOM05D002713 ORTHO05D008299 4.5e-23 114.8 79 62.0
Pp3c24_20920 Physcomitrium patens HOM05D000590 ORTHO05D006885 1.7e-22 112.8 223 35.9
AagrBONN_evm.TU.Sc2ySwM_228.128 Anthoceros agrestis HOM05D000590 ORTHO05D006885 5.5e-21 107.8 135 48.1
Sp7g08040 Schrenkiella parvula HOM05D000590 ORTHO05D006885 4.7e-20 104.8 59 86.4
Psat0s2975g0200 Pisum sativum HOM05D000832 ORTHO05D019229 5.7e-18 97.8 216 31.5
Psat3g158840 Pisum sativum HOM05D001484 ORTHO05D019229 1.1e-13 83.6 142 35.9
PGSC0003DMG400026863 Solanum tuberosum HOM05D006833 ORTHO05D006885 7.2e-13 80.9 208 30.8
Psat2g055000 Pisum sativum HOM05D002140 ORTHO05D006885 3.6e-12 78.6 309 27.5
Psat0s1135g0040 Pisum sativum HOM05D002140 ORTHO05D019229 4.0e-11 75.1 94 40.4
Aqoxy1G00115 Aquilegia oxysepala HOM05D006833 ORTHO05D006885 5.2e-11 74.7 39 74.4
Psat0s1135g0200 Pisum sativum HOM05D006833 ORTHO05D019229 1.5e-10 73.2 85 42.4
Lsat_1_v5_gn_4_103461 Lactuca sativa HOM05D002029 ORTHO05D006885 2.0e-10 72.8 45 82.2
CBR_g18883 Chara braunii HOM05D000590 ORTHO05D006885 3.4e-10 72.0 39 84.6
Psat3g158760 Pisum sativum HOM05D001484 ORTHO05D019229 4.4e-10 71.6 85 40.0
Psat1g176960 Pisum sativum HOM05D006833 ORTHO05D019229 1.7e-09 69.7 105 38.1
SMO361G0148 Selaginella moellendorffii HOM05D000590 ORTHO05D006885 2.8e-09 68.9 43 65.1
SMO356G0541 Selaginella moellendorffii HOM05D000590 ORTHO05D006885 1.4e-08 66.6 43 67.4
CBR_g18882 Chara braunii HOM05D000019 ORTHO05D000048 3.1e-08 65.5 119 40.3
Psat0s2975g0040 Pisum sativum HOM05D000832 ORTHO05D000900 2.3e-06 59.3 74 41.9
Cre11.g475950 Chlamydomonas reinhardtii HOM05D000590 ORTHO05D006885 8.6e-06 57.4 54 55.6


User provided reference genes

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