Gene: AT5G42400
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G42400
- Transcript Identifier AT5G42400.2
- Gene Type Coding gene
- Location Chr5 : 16954501-16960671 : negative
Gene Family Information
- ID HOM05D006833
- #Genes/#Species 118/89
- Phylogenetic origin
- ID ORTHO05D006885
- #Genes/#Species 137/100
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT5G42400.2
- symbol SDG25
- Alias ATXR7,ARABIDOPSIS TRITHORAX-RELATED7
- uniprot F4K1J4
Descriptions
- Description SET domain protein 25
- Computational description SET domain protein 25 (SDG25); CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), GYF (InterPro:IPR003169); BEST Arabidopsis thaliana protein match is: homologue of trithorax (TAIR:AT2G31650.1); Has 5838 Blast hits to 5683 proteins in 501 species: Archae - 3; Bacteria - 461; Metazoa - 2434; Fungi - 507; Plants - 1016; Viruses - 2; Other Eukaryotes - 1415 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0051568 | IGI ISS IEA | Gene Ontology | histone H3-K4 methylation | 1 2 |
| GO:0051568 | IEA | InterPro | histone H3-K4 methylation | |
| GO:0032259 | IEA | GOA Database | methylation | |
| GO:0009908 | IEA | GOA Database | flower development | |
| GO:0006325 | IEA | GOA Database | chromatin organization | |
| GO:0009909 | IMP | Gene Ontology | regulation of flower development | 2 |
| GO:0010452 | IDA | Gene Ontology | histone H3-K36 methylation | 1 |
| GO:0010228 | IMP | Gene Ontology | vegetative to reproductive phase transition of meristem | 1 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0042800 | IEA | Gene Ontology | histone methyltransferase activity (H3-K4 specific) | |
| GO:0042800 | IEA | InterPro | histone methyltransferase activity (H3-K4 specific) | |
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0008168 | IEA | GOA Database | methyltransferase activity | |
| GO:0016740 | IEA | GOA Database | transferase activity | |
| GO:0018024 | IEA | GOA Database | histone-lysine N-methyltransferase activity | |
| GO:0042054 | IEA | GOA Database | histone methyltransferase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IDA ISM | Gene Ontology | nucleus | 1 |
| GO:0005737 | IDA | Gene Ontology | cytoplasm | 1 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 12.3.3.4 | Chromatin organisation.post-translational histone modification.histone lysine methylation.class-III histone methyltransferase (Trithorax) |