Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A759T48 Lonicera japonica HOM05D001879 ORTHO05D007648 0.0e+00 2436.8 1281 100.0
Dinv44962 Davidia involucrata HOM05D001879 ORTHO05D007648 0.0e+00 1525.8 1372 63.7
Cfa013681 Carpinus fangiana HOM05D001879 ORTHO05D007648 0.0e+00 1323.1 1369 55.7
QL12p037902 Quercus lobata HOM05D001879 ORTHO05D007648 0.0e+00 1287.7 1367 55.4
Actinidia10192 Actinidia chinensis HOM05D001879 ORTHO05D007648 0.0e+00 1250.0 1305 56.8
Nn5g30557 Nelumbo nucifera HOM05D001879 ORTHO05D007648 0.0e+00 1239.6 1394 52.3
TAR633G2582 Trochodendron aralioides HOM05D001879 ORTHO05D007648 0.0e+00 1233.4 1392 53.2
Manes.05G181200 Manihot esculenta HOM05D001879 ORTHO05D007648 0.0e+00 1196.0 1378 50.6
Haze_22324 Corylus avellana HOM05D001879 ORTHO05D007648 0.0e+00 1170.2 1275 52.9
Cc10_g05690 Coffea canephora HOM05D001879 ORTHO05D007648 0.0e+00 1163.3 1301 53.4
TWI56G1003 Tripterygium wilfordii HOM05D001879 ORTHO05D007648 0.0e+00 1156.4 1356 50.3
CANSAT25G1585 Cannabis sativa HOM05D001879 ORTHO05D007648 0.0e+00 1142.9 1394 49.1
CiPaw.07G175900 Carya illinoinensis HOM05D001879 ORTHO05D007648 0.0e+00 1141.7 1279 51.7
Potri.014G017000 Populus trichocarpa HOM05D001879 ORTHO05D007648 0.0e+00 1140.6 1370 50.7
GSVIVG01009356001 Vitis vinifera HOM05D001879 ORTHO05D007648 0.0e+00 1140.2 1279 52.9
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 0.0e+00 1136.7 1310 52.8
Prupe.1G423900 Prunus persica HOM05D001879 ORTHO05D007648 0.0e+00 1136.3 1321 52.2
Nitab4.5_0000164g0150 Nicotiana tabacum HOM05D001879 ORTHO05D007648 0.0e+00 1121.7 1400 49.1
Sabra14G0010800 Salix brachista HOM05D001879 ORTHO05D007648 0.0e+00 1121.7 1365 49.5
DCAR_008854 Daucus carota HOM05D001879 ORTHO05D007648 0.0e+00 1112.8 1386 48.9
MD08G1086000 Malus domestica HOM05D001879 ORTHO05D007648 0.0e+00 1097.8 1292 52.0
MSTRG.1026 Avicennia marina HOM05D001879 ORTHO05D007648 0.0e+00 1091.6 1376 49.0
Thecc.08G090000 Theobroma cacao HOM05D001879 ORTHO05D007648 0.0e+00 1087.4 1243 52.2
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 0.0e+00 1079.7 1298 50.6
Glyma.17G235900 Glycine max HOM05D001879 ORTHO05D007648 0.0e+00 1077.8 1382 49.0
VMungo0647G0280 Vigna mungo HOM05D001879 ORTHO05D007648 0.0e+00 1077.4 1381 48.6
FAN15G3244 Fragaria x ananassa HOM05D001879 ORTHO05D007648 8.8e-312 1074.7 1335 49.7
Nitab4.5_0003803g0020 Nicotiana tabacum HOM05D001879 ORTHO05D007648 8.8e-312 1074.7 1400 48.6
FAN27G0954 Fragaria x ananassa HOM05D001879 ORTHO05D007648 8.8e-312 1073.9 1306 49.9
Lj5g0015061 Lotus japonicus HOM05D001879 ORTHO05D007648 1.8e-311 1073.2 1367 48.6
SalBow7G0276 Salvia bowleyana HOM05D001879 ORTHO05D007648 6.1e-311 1071.2 1309 48.9
Sopen04g031540 Solanum pennellii HOM05D001879 ORTHO05D007648 5.1e-310 1068.1 1408 47.1
Glyma.14G088600 Glycine max HOM05D001879 ORTHO05D007648 1.1e-309 1067.0 1380 48.8
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 4.7e-308 1061.6 1369 48.9
TPR.G3779 Trifolium pratense HOM05D001879 ORTHO05D007648 5.8e-306 1054.7 1331 47.6
CsaV3_4G034990 Cucumis sativus L. HOM05D001879 ORTHO05D007648 8.4e-305 1050.8 1369 49.3
FAN24G0874 Fragaria x ananassa HOM05D001879 ORTHO05D007648 9.3e-304 1047.3 1362 48.1
Phvul.001G026900 Phaseolus vulgaris HOM05D001879 ORTHO05D007648 9.3e-304 1047.3 1379 47.4
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 6.0e-303 1044.6 1343 48.9
Medtr1g018350 Medicago truncatula HOM05D001879 ORTHO05D007648 1.0e-302 1043.9 1363 47.1
ClCG05G020550 Citrullus lanatus HOM05D001879 ORTHO05D007648 5.6e-301 1038.1 1449 46.6
Gohir.D05G212700 Gossypium hirsutum HOM05D001879 ORTHO05D007648 1.2e-298 1030.4 1299 50.4
Sed0027780 Sechium edule HOM05D001879 ORTHO05D007648 5.8e-298 1028.1 1361 48.6
Peaxi162Scf00081g01617 Petunia axillaris HOM05D001879 ORTHO05D007648 7.6e-298 1027.7 1283 48.0
Gohir.A05G209500 Gossypium hirsutum HOM05D001879 ORTHO05D007648 4.9e-297 1025.0 1242 50.2
Gorai.009G219200 Gossypium raimondii HOM05D001879 ORTHO05D007648 4.2e-296 1021.9 1241 50.8
Oeu022102.3 Olea europaea HOM05D001879 ORTHO05D007648 6.9e-291 1004.6 1302 48.5
SGA_v2.0_scaffold238G43965 Striga asiatica HOM05D001879 ORTHO05D007648 5.8e-282 974.9 1362 46.0
arahy.Tifrunner.gnm1.ann1.0QZG7W Arachis hypogaea HOM05D001879 ORTHO05D007648 2.2e-281 973.0 1391 45.1
arahy.Tifrunner.gnm1.ann1.6NC3R4 Arachis hypogaea HOM05D001879 ORTHO05D007648 1.6e-279 966.8 1384 45.2
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 4.3e-277 958.7 1242 47.8
FAN20G0949 Fragaria x ananassa HOM05D001879 ORTHO05D007648 2.4e-275 953.0 1241 48.3
Rhsim07G0220800 Rhododendron simsii HOM05D001879 ORTHO05D007648 3.1e-275 952.6 1417 45.9
Eucgr.F02258 Eucalyptus grandis HOM05D001879 ORTHO05D007648 2.9e-273 946.0 1203 48.0
Solyc04g077940.4 Solanum lycopersicum HOM05D001879 ORTHO05D007648 5.5e-272 941.8 1290 44.8
Lalb_Chr24g0399421 Lupinus albus HOM05D001879 ORTHO05D007648 7.2e-272 941.4 1373 45.6
CSS0015613 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007648 8.2e-268 927.9 939 56.9
Aqoxy5G00884 Aquilegia oxysepala HOM05D001879 ORTHO05D007648 1.5e-266 923.7 1237 45.8
PSO017G6116 Papaver somniferum HOM05D001879 ORTHO05D007648 2.8e-260 902.9 1253 44.1
Psat6g016280 Pisum sativum HOM05D001879 ORTHO05D007648 1.7e-257 893.6 1290 43.8
ECA247G3074 Erigeron canadensis HOM05D001879 ORTHO05D007648 1.5e-256 890.6 1237 44.1
RcHm_v2.0_Chr6g0309441 Rosa chinensis HOM05D001879 ORTHO05D007648 4.2e-248 862.4 1057 47.4
EL10Ac1g02391 Beta vulgaris HOM05D001879 ORTHO05D007648 1.2e-245 854.4 1309 44.5
CDE06G0223 Ceratophyllum demersum HOM05D001879 ORTHO05D007648 5.5e-240 835.5 1412 39.5
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 1.3e-236 824.3 1208 45.0
HanXRQChr08g0220641 Helianthus annuus HOM05D001879 ORTHO05D007648 3.0e-230 803.1 1245 43.5
Hund24034 Selenicereus undatus HOM05D001879 ORTHO05D007648 8.6e-225 785.0 1197 43.9
ATR0208G021 Amborella trichopoda HOM05D001879 ORTHO05D007648 1.5e-221 774.2 1321 41.0
Sc15g0005720 Simmondsia chinensis HOM05D001879 ORTHO05D007648 3.4e-221 773.1 1260 43.0
Lsat_1_v5_gn_1_24340 Lactuca sativa HOM05D001879 ORTHO05D007648 2.9e-212 743.4 1290 41.9
HPP92_019611 Vanilla planifolia HOM05D001879 ORTHO05D007648 3.2e-211 740.0 1320 39.5
AUR62037434 Chenopodium quinoa HOM05D001879 ORTHO05D007648 4.1e-211 739.6 1193 39.3
FvH4_2g33220 Fragaria vesca HOM05D001879 ORTHO05D007648 5.6e-208 729.2 962 46.6
Thhalv10006638m.g Eutrema salsugineum HOM05D001879 ORTHO05D007648 9.5e-208 728.4 1298 39.1
AT1G27750 Arabidopsis thaliana HOM05D001879 ORTHO05D007648 3.5e-202 709.9 1303 38.0
AUR62038814 Chenopodium quinoa HOM05D001879 ORTHO05D007648 1.0e-201 708.4 1181 39.0
Sp1g23980 Schrenkiella parvula HOM05D001879 ORTHO05D007648 1.5e-200 704.5 1293 39.0
AL1G41280 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 1.9e-200 704.1 1301 38.9
BraA09t39344Z Brassica rapa HOM05D001879 ORTHO05D007648 4.3e-200 703.0 1290 39.2
BolC5t31365H Brassica oleracea HOM05D001879 ORTHO05D007648 9.6e-200 701.8 1288 37.7
A09p38350 Brassica napus HOM05D001879 ORTHO05D007648 1.2e-197 694.9 1290 38.9
C05p26440 Brassica napus HOM05D001879 ORTHO05D007648 6.4e-196 689.1 1288 37.5
Carub.0001s2626 Capsella rubella HOM05D001879 ORTHO05D007648 9.0e-190 668.7 1289 38.4
Lalb_Chr22g0355581 Lupinus albus HOM05D001879 ORTHO05D007648 5.6e-184 649.4 955 42.8
Aa31sc113G20 Aethionema arabicum HOM05D001879 ORTHO05D007648 3.0e-169 600.5 1186 35.6
Cpa.g.sc142.15 Carica papaya HOM05D001879 ORTHO05D007648 5.3e-166 589.7 781 47.0
BcaC05g26775 Brassica carinata HOM05D001879 ORTHO05D007648 1.1e-163 582.0 1286 34.9
SEGI_08589 Sequoiadendron giganteum HOM05D001879 ORTHO05D007648 3.4e-149 533.9 1445 30.8
Ca_13223_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 4.4e-136 490.3 695 43.7
CARHR027260 Cardamine hirsuta HOM05D001879 ORTHO05D007648 3.6e-130 470.7 935 37.3
Zm00001eb152180 Zea mays HOM05D001879 ORTHO05D007648 2.2e-124 451.4 1181 32.1
TAR381G0870 Trochodendron aralioides HOM05D001879 ORTHO05D007648 1.1e-123 449.1 598 48.0
Cpa.g.sc142.16 Carica papaya HOM05D001879 ORTHO05D007648 4.4e-112 410.6 468 54.5
Os01g0765300 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 1.4e-97 362.5 685 38.5
SHI08394 Sapria himalayana HOM05D001879 ORTHO05D007648 3.5e-93 347.8 706 37.5
AagrBONN_evm.TU.Sc2ySwM_117.1790 Anthoceros agrestis HOM05D001879 ORTHO05D007648 1.5e-88 332.4 1486 26.2
Pp3c24_10810 Physcomitrium patens HOM05D001879 ORTHO05D007648 9.9e-80 303.1 1694 24.2
Ca_13228_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 1.1e-78 299.7 368 50.5
Os01g0765200 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 2.7e-77 295.0 352 44.9
SHI08393 Sapria himalayana HOM05D001879 ORTHO05D007648 5.8e-72 277.3 317 50.8
Ca_14462_v3 Cicer arietinum L. HOM05D001879 ORTHO05D000002 4.9e-71 274.2 299 54.8
vmacro22059 Vaccinium macrocarpon HOM05D001879 ORTHO05D007648 1.7e-63 249.2 158 74.1
Mapoly0006s0231 Marchantia polymorpha HOM05D001879 ORTHO05D007648 2.4e-57 228.8 1373 25.3
Ca_22944_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 3.5e-53 214.9 459 34.2
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 8.2e-50 203.8 1341 22.8
RcHm_v2.0_Chr6g0309451 Rosa chinensis HOM05D001879 ORTHO05D007648 1.6e-42 179.5 102 81.4
CBR_g6612 Chara braunii HOM05D001879 ORTHO05D007648 7.7e-40 170.6 1795 19.8
Ca_20160_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 7.7e-40 170.6 226 42.9
Psat0ss2518g0200 Pisum sativum HOM05D001879 ORTHO05D007648 3.3e-35 155.2 201 41.3
Ca_09349_v3 Cicer arietinum L. HOM05D000083 ORTHO05D002968 3.1e-33 148.7 248 38.7
Psat5g005720 Pisum sativum HOM05D001879 ORTHO05D007648 8.5e-31 140.6 187 41.2
Duzib116G0273 Durio zibethinus HOM05D001879 ORTHO05D007648 2.4e-25 122.5 256 34.4
Psat5g005800 Pisum sativum HOM05D001879 ORTHO05D007648 3.5e-24 118.6 109 49.5
Lalb_Chr22g0355591 Lupinus albus HOM05D001879 ORTHO05D007648 1.3e-23 116.7 284 30.3
Psat4g136520 Pisum sativum HOM05D001879 ORTHO05D007648 2.5e-22 112.5 175 37.7
Ca_31153_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 4.0e-20 105.1 147 44.2
TAR381G1003 Trochodendron aralioides HOM05D001879 ORTHO05D007648 1.1e-17 97.1 260 38.5
PGSC0003DMG400024243 Solanum tuberosum HOM05D001879 ORTHO05D007648 2.4e-17 95.9 77 53.2
BolC7t42252H Brassica oleracea HOM05D001879 ORTHO05D007648 3.1e-17 95.5 107 40.2
Sopen05g013150 Solanum pennellii HOM05D001879 ORTHO05D007648 3.1e-17 95.5 74 55.4
PGSC0003DMG400024244 Solanum tuberosum HOM05D001879 ORTHO05D007648 4.1e-17 95.1 77 53.2
C07p17470 Brassica napus HOM05D001879 ORTHO05D007648 7.0e-17 94.4 85 47.1
AL4G19860 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 2.7e-16 92.4 96 51.0
CBR_g6294 Chara braunii HOM05D001879 ORTHO05D007648 3.8e-15 88.6 176 34.1
Psat1g176640 Pisum sativum HOM05D001879 ORTHO05D007648 9.4e-14 84.0 65 52.3
Haze_22323 Corylus avellana HOM05D001879 ORTHO05D007648 2.1e-13 82.8 104 61.5
BolC7t42255H Brassica oleracea HOM05D001879 ORTHO05D007648 8.8e-12 77.4 104 46.2
BcaC06g35318 Brassica carinata HOM05D011004 ORTHO05D014493 2.6e-11 75.9 211 32.2
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 5.7e-11 74.7 61 57.4
Cre09.g398030 Chlamydomonas reinhardtii HOM05D001879 ORTHO05D007648 2.8e-10 72.4 146 31.5
Cc08_g07630 Coffea canephora HOM05D006523 ORTHO05D008212 4.8e-10 71.6 67 52.2
Pp3c7_3950 Physcomitrium patens HOM05D002300 ORTHO05D002340 8.3e-10 70.9 153 28.1
BcaC06g35319 Brassica carinata HOM05D001879 ORTHO05D007648 1.4e-09 70.1 391 22.8
Solyc04g077950.2 Solanum lycopersicum HOM05D001879 ORTHO05D007648 3.1e-09 68.9 106 55.7
SEGI_23247 Sequoiadendron giganteum HOM05D002300 ORTHO05D002340 4.5e-08 65.1 148 27.0
Actinidia22689 Actinidia chinensis HOM05D001879 ORTHO05D007648 5.9e-08 64.7 70 52.9
CDE08G0044 Ceratophyllum demersum HOM05D002300 ORTHO05D002340 5.9e-08 64.7 163 27.0
Psat3g051440 Pisum sativum HOM05D005615 ORTHO05D031631 3.8e-07 62.0 77 44.2
Sed0027019 Sechium edule HOM05D002300 ORTHO05D002340 5.0e-07 61.6 333 20.7
BcaC07g40485 Brassica carinata HOM05D002300 ORTHO05D002340 6.5e-07 61.2 346 22.0
AUR62002349 Chenopodium quinoa HOM05D002300 ORTHO05D002340 8.6e-07 60.8 209 23.4
arahy.Tifrunner.gnm1.ann1.4H8PLX Arachis hypogaea HOM05D001879 ORTHO05D021484 1.9e-06 59.7 139 28.8
Aa31LG1G25160 Aethionema arabicum HOM05D002300 ORTHO05D002340 2.5e-06 59.3 226 24.3
A09p51810 Brassica napus HOM05D002300 ORTHO05D002340 2.5e-06 59.3 222 25.2
C04p04460 Brassica napus HOM05D002300 ORTHO05D002340 2.5e-06 59.3 113 25.7
BraA09t40616Z Brassica rapa HOM05D002300 ORTHO05D002340 2.5e-06 59.3 222 25.2
C08p34540 Brassica napus HOM05D002300 ORTHO05D002340 3.2e-06 58.9 222 25.2
BolC8t51055H Brassica oleracea HOM05D002300 ORTHO05D002340 3.2e-06 58.9 222 25.2
Thhalv10001307m.g Eutrema salsugineum HOM05D002300 ORTHO05D002340 3.2e-06 58.9 159 25.8
Nitab4.5_0006064g0040 Nicotiana tabacum HOM05D002300 ORTHO05D002340 3.2e-06 58.9 80 35.0
BcaB03g13969 Brassica carinata HOM05D001879 ORTHO05D007648 4.2e-06 58.5 69 47.8
Cfa010207 Carpinus fangiana HOM05D001879 ORTHO05D007648 4.2e-06 58.5 53 52.8
Cc03_g12090 Coffea canephora HOM05D002300 ORTHO05D002340 4.2e-06 58.5 360 19.2
Manes.04G039300 Manihot esculenta HOM05D002300 ORTHO05D002340 4.2e-06 58.5 293 21.8
AL4G14580 Arabidopsis lyrata HOM05D031540 ORTHO05D014741 7.2e-06 57.8 97 43.3
BcaC02g12397 Brassica carinata HOM05D002300 ORTHO05D002340 7.2e-06 57.8 113 26.5
Sp4g25510 Schrenkiella parvula HOM05D002300 ORTHO05D002340 7.2e-06 57.8 229 23.1


User provided reference genes

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