Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A759T44 Lonicera japonica HOM05D002133 ORTHO05D002256 5.7e-37 157.1 84 100.0
vmacro21437 Vaccinium macrocarpon HOM05D002133 ORTHO05D002256 2.9e-28 128.3 83 77.1
Cc10_g05710 Coffea canephora HOM05D002133 ORTHO05D002256 2.4e-27 125.2 83 74.7
Dinv44960 Davidia involucrata HOM05D002133 ORTHO05D002256 2.0e-26 122.1 82 75.6
CSS0028243 Camellia sinensis var. sinensis HOM05D002133 ORTHO05D002256 2.7e-26 121.7 83 73.5
Rhsim06G0061800 Rhododendron simsii HOM05D002133 ORTHO05D002256 2.7e-26 121.7 82 75.6
Nitab4.5_0003803g0030 Nicotiana tabacum HOM05D002133 ORTHO05D002256 1.3e-25 119.4 83 75.9
CAN.G724.13 Capsicum annuum HOM05D002133 ORTHO05D002256 1.7e-25 119.0 83 73.5
PGSC0003DMG400021507 Solanum tuberosum HOM05D002133 ORTHO05D002256 3.0e-25 118.2 83 74.7
Actinidia38102 Actinidia chinensis HOM05D002133 ORTHO05D002256 8.6e-25 116.7 83 71.1
Solyc12g088370.2 Solanum lycopersicum HOM05D002133 ORTHO05D002256 8.6e-25 116.7 83 72.3
Nitab4.5_0000164g0130 Nicotiana tabacum HOM05D002133 ORTHO05D002256 1.1e-24 116.3 83 73.5
Peaxi162Scf00081g01710 Petunia axillaris HOM05D002133 ORTHO05D002256 1.9e-24 115.5 83 72.3
Solyc04g077920.3 Solanum lycopersicum HOM05D002133 ORTHO05D002256 1.9e-24 115.5 83 72.3
Sopen04g031520 Solanum pennellii HOM05D002133 ORTHO05D002256 1.9e-24 115.5 83 72.3
Atru.chr13.822 Acer truncatum HOM05D002133 ORTHO05D002256 3.3e-24 114.8 84 73.8
Lsat_1_v5_gn_4_131141 Lactuca sativa HOM05D002133 ORTHO05D002256 4.3e-24 114.4 83 74.7
Lsat_1_v5_gn_6_112361 Lactuca sativa HOM05D002133 ORTHO05D002256 4.3e-24 114.4 82 73.2
Actinidia10193 Actinidia chinensis HOM05D002133 ORTHO05D002256 5.6e-24 114.0 83 73.5
Dinv39230 Davidia involucrata HOM05D002133 ORTHO05D002256 7.3e-24 113.6 83 69.9
Ciclev10001181m.g Citrus clementina HOM05D002133 ORTHO05D002256 9.5e-24 113.2 84 72.6
PGSC0003DMG400011546 Solanum tuberosum HOM05D002133 ORTHO05D002256 1.6e-23 112.5 83 69.9
HanXRQChr09g0266701 Helianthus annuus HOM05D002133 ORTHO05D002256 2.8e-23 111.7 83 73.5
Actinidia22690 Actinidia chinensis HOM05D002133 ORTHO05D002256 3.6e-23 111.3 83 71.1
MSTRG.24371 Avicennia marina HOM05D002133 ORTHO05D002256 6.2e-23 110.5 84 70.2
Gohir.A02G081200 Gossypium hirsutum HOM05D002133 ORTHO05D002256 6.2e-23 110.5 83 71.1
Oeu048578.1 Olea europaea HOM05D002133 ORTHO05D002256 1.8e-22 109.0 84 69.0
Prupe.1G423700 Prunus persica HOM05D002133 ORTHO05D002256 1.8e-22 109.0 84 69.0
DCAR_020073 Daucus carota HOM05D002133 ORTHO05D002256 3.1e-22 108.2 84 69.0
Eucgr.F02256 Eucalyptus grandis HOM05D002133 ORTHO05D002256 3.1e-22 108.2 84 71.4
DCAR_009883 Daucus carota HOM05D002133 ORTHO05D002256 6.8e-22 107.1 84 71.4
MD08G1085800 Malus domestica HOM05D002133 ORTHO05D002256 8.9e-22 106.7 84 65.5
CSS0038052 Camellia sinensis var. sinensis HOM05D002133 ORTHO05D002256 1.2e-21 106.3 83 67.5
Oeu037500.1 Olea europaea HOM05D002133 ORTHO05D002256 1.5e-21 105.9 84 69.0
Potri.014G016800 Populus trichocarpa HOM05D002133 ORTHO05D002256 2.0e-21 105.5 84 67.9
RcHm_v2.0_Chr6g0309471 Rosa chinensis HOM05D002133 ORTHO05D002256 2.0e-21 105.5 85 69.4
MD15G1071000 Malus domestica HOM05D002133 ORTHO05D002256 4.4e-21 104.4 84 64.3
Sabra02G0093600 Salix brachista HOM05D002133 ORTHO05D002256 7.5e-21 103.6 83 67.5
THA.LOC104820516 Tarenaya hassleriana HOM05D002133 ORTHO05D002256 7.5e-21 103.6 83 67.5
Thecc.08G089800 Theobroma cacao HOM05D002133 ORTHO05D002256 7.5e-21 103.6 83 67.5
AUR62022485 Chenopodium quinoa HOM05D002133 ORTHO05D002256 2.2e-20 102.1 84 69.0
THA.LOC104814188 Tarenaya hassleriana HOM05D002133 ORTHO05D002256 2.2e-20 102.1 83 67.5
Duzib041G0730 Durio zibethinus HOM05D002133 ORTHO05D002256 2.9e-20 101.7 83 65.1
HanXRQChr01g0027951 Helianthus annuus HOM05D002133 ORTHO05D002256 2.9e-20 101.7 81 67.9
VMungo1309G1787 Vigna mungo HOM05D002133 ORTHO05D002256 2.9e-20 101.7 83 65.1
arahy.Tifrunner.gnm1.ann1.VTP83K Arachis hypogaea HOM05D002133 ORTHO05D002256 3.7e-20 101.3 84 64.3
MELO3C016813.2 Cucumis melo HOM05D002133 ORTHO05D002256 3.7e-20 101.3 82 63.4
CANSAT25G1442 Cannabis sativa HOM05D002133 ORTHO05D002256 4.9e-20 100.9 84 65.5
QL12p037925 Quercus lobata HOM05D002133 ORTHO05D002256 4.9e-20 100.9 84 66.7
Sed0019340 Sechium edule HOM05D002133 ORTHO05D002256 4.9e-20 100.9 82 63.4
Glyma.06G046300 Glycine max HOM05D002133 ORTHO05D002256 6.4e-20 100.5 83 65.1
Phvul.009G071500 Phaseolus vulgaris HOM05D002133 ORTHO05D002256 6.4e-20 100.5 83 65.1
arahy.Tifrunner.gnm1.ann1.KXTN9G Arachis hypogaea HOM05D002133 ORTHO05D002256 2.4e-19 98.6 84 63.1
CARHR027280 Cardamine hirsuta HOM05D002133 ORTHO05D002256 2.4e-19 98.6 83 62.7
CsaV3_4G035010 Cucumis sativus L. HOM05D002133 ORTHO05D002256 2.4e-19 98.6 82 61.0
SGA_v2.0_scaffold28G11825 Striga asiatica HOM05D002133 ORTHO05D002256 2.4e-19 98.6 82 62.2
Psat5g039040 Pisum sativum HOM05D002133 ORTHO05D002256 4.1e-19 97.8 83 62.7
Potri.002G119100 Populus trichocarpa HOM05D002133 ORTHO05D002256 4.1e-19 97.8 84 64.3
MSTRG.22223 Avicennia marina HOM05D002133 ORTHO05D002256 5.4e-19 97.4 84 61.9
ClCG05G020570 Citrullus lanatus HOM05D002133 ORTHO05D002256 5.4e-19 97.4 82 62.2
Lj5g0009817 Lotus japonicus HOM05D002133 ORTHO05D002256 5.4e-19 97.4 83 62.7
PGR031G1293 Punica granatum HOM05D002133 ORTHO05D002256 5.4e-19 97.4 85 63.5
Gohir.D05G212800 Gossypium hirsutum HOM05D002133 ORTHO05D002256 7.1e-19 97.1 85 64.7
FvH4_2g33200 Fragaria vesca HOM05D002133 ORTHO05D002256 9.2e-19 96.7 66 72.7
FAN24G1433 Fragaria x ananassa HOM05D002133 ORTHO05D002256 9.2e-19 96.7 66 72.7
Haze_22448 Corylus avellana HOM05D002133 ORTHO05D002256 1.2e-18 96.3 84 64.3
Duzib093G0932 Durio zibethinus HOM05D002133 ORTHO05D002256 1.2e-18 96.3 83 62.7
TPR.G33694 Trifolium pratense HOM05D002133 ORTHO05D002256 1.2e-18 96.3 83 61.4
Cpa.g.sc142.18 Carica papaya HOM05D002133 ORTHO05D002256 1.6e-18 95.9 84 63.1
Ca_15902_v3 Cicer arietinum L. HOM05D002133 ORTHO05D002256 1.6e-18 95.9 83 60.2
Medtr3g103090 Medicago truncatula HOM05D002133 ORTHO05D002256 2.1e-18 95.5 83 61.4
Nitab4.5_0002968g0020 Nicotiana tabacum HOM05D002133 ORTHO05D002256 2.1e-18 95.5 75 66.7
Gohir.A05G209400 Gossypium hirsutum HOM05D002133 ORTHO05D002256 2.7e-18 95.1 85 63.5
Manes.05G181400 Manihot esculenta HOM05D002133 ORTHO05D002256 3.5e-18 94.7 85 58.8
arahy.Tifrunner.gnm1.ann1.C26UD9 Arachis hypogaea HOM05D002133 ORTHO05D002256 4.6e-18 94.4 83 61.4
Gohir.D02G088900 Gossypium hirsutum HOM05D002133 ORTHO05D002256 4.6e-18 94.4 83 63.9
Gorai.005G099600 Gossypium raimondii HOM05D002133 ORTHO05D002256 4.6e-18 94.4 83 63.9
EL10Ac1g02389 Beta vulgaris HOM05D002133 ORTHO05D002256 1.0e-17 93.2 83 62.7
Lj1g0026971 Lotus japonicus HOM05D002133 ORTHO05D002256 1.0e-17 93.2 84 60.7
arahy.Tifrunner.gnm1.ann1.68HS6I Arachis hypogaea HOM05D002133 ORTHO05D002256 1.3e-17 92.8 83 61.4
FAN15G1988 Fragaria x ananassa HOM05D002133 ORTHO05D002256 1.7e-17 92.4 66 69.7
FAN27G0263 Fragaria x ananassa HOM05D002133 ORTHO05D002256 1.7e-17 92.4 85 61.2
unitig_578.g16147 Utricularia gibba HOM05D002133 ORTHO05D002256 1.7e-17 92.4 84 59.5
Migut.N02776 Erythranthe guttata HOM05D002133 ORTHO05D002256 2.3e-17 92.0 84 63.1
FAN20G2377 Fragaria x ananassa HOM05D002133 ORTHO05D002256 3.0e-17 91.7 85 61.2
Duzib116G0883 Durio zibethinus HOM05D002133 ORTHO05D002256 3.9e-17 91.3 82 59.8
ECA246G3335 Erigeron canadensis HOM05D002133 ORTHO05D002256 5.1e-17 90.9 84 64.3
AL1G41310 Arabidopsis lyrata HOM05D002133 ORTHO05D002256 8.6e-17 90.1 83 59.0
CiPaw.07G175700 Carya illinoinensis HOM05D002133 ORTHO05D002256 8.6e-17 90.1 83 62.7
AT1G27760 Arabidopsis thaliana HOM05D002133 ORTHO05D002256 1.5e-16 89.4 83 59.0
Manes.18G045800 Manihot esculenta HOM05D002133 ORTHO05D002256 1.9e-16 89.0 85 56.5
Ah.11g039780 Amaranthus hybridus HOM05D002133 ORTHO05D002256 3.3e-16 88.2 85 61.2
ECA232G3220 Erigeron canadensis HOM05D002133 ORTHO05D002256 3.3e-16 88.2 83 59.0
Sc15g0003510 Simmondsia chinensis HOM05D002133 ORTHO05D002256 3.3e-16 88.2 84 59.5
Glyma.04G045600 Glycine max HOM05D002133 ORTHO05D002256 5.6e-16 87.4 75 62.7
COL.COLO4_28515 Corchorus olitorius HOM05D002133 ORTHO05D002256 1.6e-15 85.9 84 59.5
Gorai.009G219300 Gossypium raimondii HOM05D002133 ORTHO05D002256 2.8e-15 85.1 85 58.8
GSVIVG01009354001 Vitis vinifera HOM05D002133 ORTHO05D002256 3.6e-15 84.7 83 56.6
Aqoxy5G00879 Aquilegia oxysepala HOM05D002133 ORTHO05D002256 6.2e-15 84.0 83 56.6
Lalb_Chr23g0267501 Lupinus albus HOM05D002133 ORTHO05D002256 6.2e-15 84.0 87 52.9
Thhalv10007663m.g Eutrema salsugineum HOM05D002133 ORTHO05D002256 8.1e-15 83.6 85 60.0
Carub.0001s2628 Capsella rubella HOM05D002133 ORTHO05D002256 1.1e-14 83.2 84 54.8
Glyma.17G235100 Glycine max HOM05D002133 ORTHO05D002256 1.1e-14 83.2 84 56.0
Gorai.009G277100 Gossypium raimondii HOM05D002133 ORTHO05D002256 2.4e-14 82.0 82 57.3
Sp1g24010 Schrenkiella parvula HOM05D002133 ORTHO05D002256 2.4e-14 82.0 85 57.6
TAR381G1089 Trochodendron aralioides HOM05D002133 ORTHO05D002256 4.0e-14 81.3 82 56.1
BcaNung06154 Brassica carinata HOM05D002133 ORTHO05D002256 5.2e-14 80.9 85 57.6
MD08G1085400 Malus domestica HOM05D002133 ORTHO05D002256 5.2e-14 80.9 70 64.3
A09p38330 Brassica napus HOM05D002133 ORTHO05D002256 6.8e-14 80.5 85 56.5
Aa31sc113G50 Aethionema arabicum HOM05D002133 ORTHO05D002256 8.9e-14 80.1 82 57.3
BcaC06g35320 Brassica carinata HOM05D002133 ORTHO05D002256 8.9e-14 80.1 85 56.5
C07p17460 Brassica napus HOM05D002133 ORTHO05D002256 8.9e-14 80.1 85 56.5
BolC7t42251H Brassica oleracea HOM05D002133 ORTHO05D002256 8.9e-14 80.1 85 56.5
CANSAT80G1456 Cannabis sativa HOM05D002133 ORTHO05D002256 1.2e-13 79.7 86 53.5
Hund24035 Selenicereus undatus HOM05D002133 ORTHO05D002256 1.2e-13 79.7 73 58.9
TWI12G0489 Tripterygium wilfordii HOM05D002133 ORTHO05D002256 1.5e-13 79.3 84 53.6
A07p11580 Brassica napus HOM05D002133 ORTHO05D002256 4.4e-13 77.8 85 55.3
Lalb_Chr22g0355651 Lupinus albus HOM05D002133 ORTHO05D002256 4.4e-13 77.8 85 55.3
TWI56G0614 Tripterygium wilfordii HOM05D002133 ORTHO05D002256 5.8e-13 77.4 84 54.8
VMungo0647G0922 Vigna mungo HOM05D002133 ORTHO05D002256 9.9e-13 76.6 84 52.4
BcaB03g13968 Brassica carinata HOM05D002133 ORTHO05D002256 1.3e-12 76.3 85 51.8
BcaC01g01568 Brassica carinata HOM05D002133 ORTHO05D002256 1.3e-12 76.3 84 58.3
Lalb_Chr08g0245541 Lupinus albus HOM05D002133 ORTHO05D002256 1.3e-12 76.3 59 62.7
Nitab4.5_0002314g0110 Nicotiana tabacum HOM05D002133 ORTHO05D002256 2.2e-12 75.5 101 50.5
Gohir.D05G265300 Gossypium hirsutum HOM05D002133 ORTHO05D002256 2.9e-12 75.1 77 55.8
BcaC01g01569 Brassica carinata HOM05D002133 ORTHO05D002256 3.8e-12 74.7 84 54.8
A08p26060 Brassica napus HOM05D002133 ORTHO05D002256 4.9e-12 74.3 70 57.1
C03p74600 Brassica napus HOM05D002133 ORTHO05D002256 4.9e-12 74.3 70 57.1
BolC3t19708H Brassica oleracea HOM05D002133 ORTHO05D002256 4.9e-12 74.3 70 57.1
BraA08t34556Z Brassica rapa HOM05D002133 ORTHO05D002256 4.9e-12 74.3 70 57.1
C05p26460 Brassica napus HOM05D002133 ORTHO05D002256 6.4e-12 73.9 72 59.7
BolC5t31367H Brassica oleracea HOM05D002133 ORTHO05D002256 6.4e-12 73.9 72 59.7
BraA09t39343Z Brassica rapa HOM05D002133 ORTHO05D002256 8.4e-12 73.6 72 58.3
Phvul.001G027600 Phaseolus vulgaris HOM05D002133 ORTHO05D002256 1.1e-11 73.2 84 50.0
TAR376G0191 Trochodendron aralioides HOM05D002133 ORTHO05D002256 1.1e-11 73.2 83 50.6
TAR376G1139 Trochodendron aralioides HOM05D002133 ORTHO05D002256 1.1e-11 73.2 83 50.6
BcaB08g34833 Brassica carinata HOM05D002133 ORTHO05D002256 2.4e-11 72.0 84 54.8
Glyma.14G089009 Glycine max HOM05D002133 ORTHO05D002256 2.4e-11 72.0 87 49.4
SalBow7G0136 Salvia bowleyana HOM05D002133 ORTHO05D002256 2.4e-11 72.0 76 56.6
BcaC05g26776 Brassica carinata HOM05D002133 ORTHO05D002256 2.1e-10 68.9 85 49.4
BraA07t28946Z Brassica rapa HOM05D002133 ORTHO05D002256 7.8e-10 67.0 49 63.3
CDE02G2866 Ceratophyllum demersum HOM05D002133 ORTHO05D002256 2.3e-09 65.5 83 48.2
CDE04G2518 Ceratophyllum demersum HOM05D002133 ORTHO05D002256 2.3e-09 65.5 83 47.0
Thhalv10017549m.g Eutrema salsugineum HOM05D002133 ORTHO05D002256 2.3e-09 65.5 48 64.6
Thhalv10017670m.g Eutrema salsugineum HOM05D002133 ORTHO05D002256 2.3e-09 65.5 56 57.1
TAR625G0071 Trochodendron aralioides HOM05D002133 ORTHO05D002256 2.3e-09 65.5 57 57.9
Thhalv10001793m.g Eutrema salsugineum HOM05D002133 ORTHO05D002256 6.6e-09 63.9 83 50.6
Zm00001eb108170 Zea mays HOM05D002133 ORTHO05D002256 8.7e-09 63.5 75 48.0
Os03g0448700 Oryza sativa ssp. japonica HOM05D002133 ORTHO05D002256 1.5e-08 62.8 70 50.0
Nn2g15136 Nelumbo nucifera HOM05D002133 ORTHO05D002256 3.3e-08 61.6 80 45.0
Os07g0588000 Oryza sativa ssp. japonica HOM05D002133 ORTHO05D002256 5.6e-08 60.8 75 45.3
Zm00001eb326080 Zea mays HOM05D002133 ORTHO05D002256 7.3e-08 60.5 75 44.0
Gohir.A05G263101 Gossypium hirsutum HOM05D002133 ORTHO05D002256 1.2e-07 59.7 82 50.0
AUR62037427 Chenopodium quinoa HOM05D002133 ORTHO05D002256 1.6e-07 59.3 60 63.3
Thhalv10009506m.g Eutrema salsugineum HOM05D002133 ORTHO05D002256 1.6e-07 59.3 49 61.2
Nn1g04581 Nelumbo nucifera HOM05D002133 ORTHO05D002256 8.1e-07 57.0 72 48.6
ATR0208G038 Amborella trichopoda HOM05D002133 ORTHO05D002256 1.1e-06 56.6 82 39.0
CBR_g3782 Chara braunii HOM05D002133 ORTHO05D002256 4.0e-06 54.7 82 39.0
PSO170G0233 Papaver somniferum HOM05D002133 ORTHO05D002256 4.0e-06 54.7 85 41.2
unitig_8.g4879 Utricularia gibba HOM05D002133 ORTHO05D002256 6.9e-06 53.9 60 51.7


User provided reference genes

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