Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A759G42 Lonicera japonica HOM05D001879 ORTHO05D007957 0.0e+00 1595.5 817 100.0
Dinv44961 Davidia involucrata HOM05D001879 ORTHO05D007957 4.0e-292 1008.1 792 68.3
Hma1.2p1_0210F.1_g089520 Hydrangea macrophylla HOM05D001879 ORTHO05D007957 1.7e-287 992.6 852 64.9
Actinidia38101 Actinidia chinensis HOM05D001879 ORTHO05D007957 9.8e-283 976.9 844 64.0
Nitab4.5_0003803g0010 Nicotiana tabacum HOM05D001879 ORTHO05D007957 9.5e-278 960.3 854 63.5
Nitab4.5_0000164g0140 Nicotiana tabacum HOM05D001879 ORTHO05D007957 2.4e-273 945.7 862 62.1
Cc10_g05700 Coffea canephora HOM05D001879 ORTHO05D007957 5.4e-273 944.5 858 61.3
Actinidia08249 Actinidia chinensis HOM05D001879 ORTHO05D007957 1.2e-272 943.3 794 65.6
GSVIVG01009355001 Vitis vinifera HOM05D001879 ORTHO05D007957 2.1e-269 932.6 837 62.1
vmacro22058 Vaccinium macrocarpon HOM05D001879 ORTHO05D007957 3.1e-268 928.7 926 58.6
QL12p037915 Quercus lobata HOM05D001879 ORTHO05D007957 2.1e-264 916.0 889 59.3
Cfa013682 Carpinus fangiana HOM05D001879 ORTHO05D007957 1.1e-262 910.2 902 58.5
MD15G1071100 Malus domestica HOM05D001879 ORTHO05D007957 1.8e-260 902.9 897 58.9
Gorai.002G135500 Gossypium raimondii HOM05D001879 ORTHO05D007957 1.5e-259 899.8 892 58.0
Solyc04g077930.4 Solanum lycopersicum HOM05D001879 ORTHO05D007957 5.8e-259 897.9 923 56.2
Gohir.D01G110700 Gossypium hirsutum HOM05D001879 ORTHO05D007957 4.9e-258 894.8 909 57.3
Sopen04g031530 Solanum pennellii HOM05D001879 ORTHO05D007957 1.1e-257 893.6 923 56.1
CAN.G724.12 Capsicum annuum HOM05D001879 ORTHO05D007957 7.1e-257 891.0 776 62.5
Gohir.A01G122900 Gossypium hirsutum HOM05D001879 ORTHO05D007957 1.0e-255 887.1 906 56.5
Potri.014G016900 Populus trichocarpa HOM05D001879 ORTHO05D007957 1.3e-255 886.7 905 56.8
Phvul.009G071000 Phaseolus vulgaris HOM05D001879 ORTHO05D007957 2.3e-255 885.9 868 57.6
MD08G1085900 Malus domestica HOM05D001879 ORTHO05D007957 7.3e-254 880.9 857 58.8
TWI56G1363 Tripterygium wilfordii HOM05D001879 ORTHO05D007957 1.3e-253 880.2 925 56.1
Glyma.04G045100 Glycine max HOM05D001879 ORTHO05D007957 1.6e-253 879.8 872 57.1
VMungo1309G0716 Vigna mungo HOM05D001879 ORTHO05D007957 6.2e-253 877.9 868 56.9
Lj1g0023876 Lotus japonicus HOM05D001879 ORTHO05D007957 1.1e-252 877.1 870 57.6
FAN27G1994 Fragaria x ananassa HOM05D001879 ORTHO05D007957 9.0e-252 874.0 907 57.8
FvH4_2g33210 Fragaria vesca HOM05D001879 ORTHO05D007957 1.2e-251 873.6 914 57.4
SalBow6G3417 Salvia bowleyana HOM05D001879 ORTHO05D007957 6.4e-250 867.8 886 56.4
CANSAT11G0135 Cannabis sativa HOM05D001879 ORTHO05D007957 8.4e-250 867.5 906 56.4
arahy.Tifrunner.gnm1.ann1.0Z12M9 Arachis hypogaea HOM05D001879 ORTHO05D007957 3.2e-249 865.5 879 56.2
Ca_15906_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007957 4.2e-249 865.1 867 57.2
CiPaw.07G175800 Carya illinoinensis HOM05D001879 ORTHO05D007957 9.3e-249 864.0 899 57.1
Migut.N02775 Erythranthe guttata HOM05D001879 ORTHO05D007957 9.3e-249 864.0 854 56.4
Glyma.06G045600 Glycine max HOM05D001879 ORTHO05D007957 1.2e-248 863.6 866 56.8
Hund05306 Selenicereus undatus HOM05D001879 ORTHO05D007957 7.8e-248 860.9 908 54.5
FAN20G0243 Fragaria x ananassa HOM05D001879 ORTHO05D007957 1.7e-247 859.8 916 57.0
arahy.Tifrunner.gnm1.ann1.D4I9HU Arachis hypogaea HOM05D001879 ORTHO05D007957 2.3e-247 859.4 871 56.1
FAN15G2911 Fragaria x ananassa HOM05D001879 ORTHO05D007957 2.3e-247 859.4 914 56.8
HanXRQChr01g0027941 Helianthus annuus HOM05D001879 ORTHO05D007957 3.9e-247 858.6 895 56.1
Manes.05G181300 Manihot esculenta HOM05D001879 ORTHO05D007957 3.9e-247 858.6 892 55.8
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 3.3e-246 855.5 887 57.5
RcHm_v2.0_Chr6g0309461 Rosa chinensis HOM05D001879 ORTHO05D007957 3.3e-246 855.5 793 61.2
Oeu057374.1 Olea europaea HOM05D001879 ORTHO05D007957 9.6e-246 854.0 857 57.5
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 1.8e-244 849.7 881 55.7
Lalb_Chr11g0062861 Lupinus albus HOM05D001879 ORTHO05D007957 3.1e-244 849.0 886 56.0
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 4.0e-244 848.6 878 55.8
Psat0s3943g0040 Pisum sativum HOM05D001879 ORTHO05D007957 3.8e-242 842.0 864 56.6
CsaV3_4G035000 Cucumis sativus L. HOM05D001879 ORTHO05D007957 6.4e-242 841.3 885 56.2
Sabra14G0010700 Salix brachista HOM05D001879 ORTHO05D007957 9.3e-241 837.4 903 54.0
FAN24G3463 Fragaria x ananassa HOM05D001879 ORTHO05D007957 1.2e-240 837.0 873 57.4
Aqoxy6G02668 Aquilegia oxysepala HOM05D001879 ORTHO05D007957 6.0e-240 834.7 794 58.4
Prupe.1G423800 Prunus persica HOM05D001879 ORTHO05D007957 1.0e-239 833.9 891 56.0
ClCG05G020560 Citrullus lanatus HOM05D001879 ORTHO05D007957 3.0e-239 832.4 916 54.3
Medtr3g103040 Medicago truncatula HOM05D001879 ORTHO05D007957 5.1e-239 831.6 879 55.2
Cpa.g.sc142.17 Carica papaya HOM05D001879 ORTHO05D007957 5.6e-238 828.2 884 55.0
Sc26g0004180 Simmondsia chinensis HOM05D001879 ORTHO05D007957 2.4e-236 822.8 835 56.9
Nn1g04585 Nelumbo nucifera HOM05D001879 ORTHO05D007957 1.2e-235 820.5 857 56.7
AUR62037429 Chenopodium quinoa HOM05D001879 ORTHO05D007957 4.5e-235 818.5 807 57.4
Eucgr.F02257 Eucalyptus grandis HOM05D001879 ORTHO05D007957 4.5e-235 818.5 894 54.6
EL10Ac1g02390 Beta vulgaris HOM05D001879 ORTHO05D007957 4.6e-232 808.5 842 54.0
TPR.G33684 Trifolium pratense HOM05D001879 ORTHO05D007957 6.0e-232 808.1 908 52.4
THA.LOC104820515 Tarenaya hassleriana HOM05D001879 ORTHO05D007957 1.8e-231 806.6 805 56.1
AUR62038791 Chenopodium quinoa HOM05D001879 ORTHO05D007957 1.9e-230 803.1 853 54.5
SGA_v2.0_scaffold152G36803 Striga asiatica HOM05D001879 ORTHO05D007957 7.4e-230 801.2 851 53.7
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 1.1e-228 797.3 827 55.4
AT1G27752 Arabidopsis thaliana HOM05D001879 ORTHO05D007957 1.4e-228 797.0 828 56.3
AL1G41290 Arabidopsis lyrata HOM05D001879 ORTHO05D007957 6.9e-228 794.7 827 55.9
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 1.3e-226 790.4 848 52.0
ECA246G2822 Erigeron canadensis HOM05D001879 ORTHO05D007957 2.2e-226 789.6 790 57.0
THA.LOC104812592 Tarenaya hassleriana HOM05D001879 ORTHO05D007957 2.9e-226 789.3 825 54.2
Thhalv10006764m.g Eutrema salsugineum HOM05D001879 ORTHO05D007957 2.1e-224 783.1 806 55.0
C03p74580 Brassica napus HOM05D001879 ORTHO05D007957 7.9e-224 781.2 791 55.0
Carub.0001s2627 Capsella rubella HOM05D001879 ORTHO05D007957 1.3e-223 780.4 793 55.2
Sp1g23990 Schrenkiella parvula HOM05D001879 ORTHO05D007957 1.8e-223 780.0 804 55.2
PSO675G4263 Papaver somniferum HOM05D001879 ORTHO05D007957 2.3e-223 779.6 786 57.0
PSO541G1802 Papaver somniferum HOM05D001879 ORTHO05D007957 3.9e-223 778.9 837 54.0
BolC3t19706H Brassica oleracea HOM05D001879 ORTHO05D007957 8.7e-223 777.7 811 54.5
SalBow8G5177 Salvia bowleyana HOM05D001879 ORTHO05D007957 1.9e-222 776.5 866 52.9
A08p26070 Brassica napus HOM05D001879 ORTHO05D007957 3.3e-222 775.8 791 55.2
BraA08t34557Z Brassica rapa HOM05D001879 ORTHO05D007957 2.2e-221 773.1 791 54.9
Aa31sc113G40 Aethionema arabicum HOM05D001879 ORTHO05D007957 8.2e-221 771.2 818 53.7
BcaC01g01572 Brassica carinata HOM05D001879 ORTHO05D007957 1.6e-208 730.3 811 52.8
ATR0208G030 Amborella trichopoda HOM05D001879 ORTHO05D007957 1.3e-202 710.7 835 49.3
PGSC0003DMG400021524 Solanum tuberosum HOM05D001879 ORTHO05D007957 1.4e-199 700.7 648 60.8
CDE02G0795 Ceratophyllum demersum HOM05D001879 ORTHO05D007957 6.7e-199 698.4 758 52.5
unitig_578.g16146 Utricularia gibba HOM05D001879 ORTHO05D007957 3.6e-192 676.0 786 50.4
Thecc.08G089900 Theobroma cacao HOM05D001879 ORTHO05D007957 2.9e-186 656.4 685 57.1
Lsat_1_v5_gn_6_112340 Lactuca sativa HOM05D001879 ORTHO05D007957 9.4e-185 651.4 862 47.9
Sed0020869 Sechium edule HOM05D001879 ORTHO05D007957 2.7e-179 633.3 693 53.4
Zm00001eb007600 Zea mays HOM05D001879 ORTHO05D007957 3.4e-174 616.3 818 47.7
DCAR_009884 Daucus carota HOM05D001879 ORTHO05D007957 2.7e-171 606.7 836 47.6
Os03g0205000 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007957 1.5e-169 600.9 780 47.8
TAR381G0637 Trochodendron aralioides HOM05D001879 ORTHO05D007957 3.3e-169 599.7 476 65.1
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 9.5e-169 598.2 479 65.3
HPP92_009537 Vanilla planifolia HOM05D001879 ORTHO05D007957 8.0e-168 595.1 703 50.5
CSS0023334 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007957 1.4e-167 594.3 409 71.9
CARHR027270 Cardamine hirsuta HOM05D001879 ORTHO05D007957 2.1e-155 553.9 586 53.2
Peaxi162Scf00081g00176 Petunia axillaris HOM05D001879 ORTHO05D007957 3.9e-154 549.7 543 58.0
Haze_22326 Corylus avellana HOM05D001879 ORTHO05D007957 3.2e-132 476.9 500 57.6
MD03G1160700 Malus domestica HOM05D001879 ORTHO05D007957 2.9e-125 453.8 412 58.7
Mapoly0067s0042 Marchantia polymorpha HOM05D001879 ORTHO05D007957 2.9e-109 400.6 738 36.0
CANSAT25G3038 Cannabis sativa HOM05D001879 ORTHO05D007957 3.9e-90 337.0 223 75.8
TAR381G1515 Trochodendron aralioides HOM05D001879 ORTHO05D007957 2.8e-88 330.9 334 62.0
SMO347G0602 Selaginella moellendorffii HOM05D001879 ORTHO05D007957 1.6e-83 315.1 776 32.6
Pp3c2_23190 Physcomitrium patens HOM05D001879 ORTHO05D007957 3.6e-83 313.9 960 29.9
SHI08396 Sapria himalayana HOM05D001879 ORTHO05D007957 6.1e-83 313.2 539 40.4
AagrBONN_evm.TU.Sc2ySwM_362.2893 Anthoceros agrestis HOM05D001879 ORTHO05D007957 7.7e-78 296.2 656 32.5
CBR_g57086 Chara braunii HOM05D001879 ORTHO05D007957 6.8e-74 283.1 1089 27.6
Haze_22325 Corylus avellana HOM05D001879 ORTHO05D007957 8.0e-67 259.6 219 65.8
SEGI_28261 Sequoiadendron giganteum HOM05D001879 ORTHO05D007957 1.0e-58 232.6 285 45.3
BraA09t40950Z Brassica rapa HOM05D001879 ORTHO05D007957 4.7e-51 207.2 148 69.6
CSS0041216 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007957 1.4e-42 179.1 167 64.7
Atru.chr13.821 Acer truncatum HOM05D001879 ORTHO05D007957 5.1e-37 160.6 251 45.0
SHI08398 Sapria himalayana HOM05D001879 ORTHO05D007957 3.3e-36 157.9 218 45.4
HanXRQChr05g0145561 Helianthus annuus HOM05D001879 ORTHO05D007957 1.1e-23 116.3 63 82.5
Cfa000625 Carpinus fangiana HOM05D001879 ORTHO05D007957 1.7e-21 109.0 157 47.1
SHI08400 Sapria himalayana HOM05D001879 ORTHO05D007957 3.1e-18 98.2 104 56.7
MCO02G333 Micromonas commoda HOM05D001879 ORTHO05D007957 5.8e-17 94.0 797 24.6
HPP92_009536 Vanilla planifolia HOM05D001879 ORTHO05D007957 2.2e-16 92.0 134 44.0
Cfa010565 Carpinus fangiana HOM05D001879 ORTHO05D007957 4.3e-12 77.8 111 44.1
C05p26450 Brassica napus HOM05D001879 ORTHO05D007957 5.6e-12 77.4 54 68.5
BolC5t31366H Brassica oleracea HOM05D001879 ORTHO05D007957 5.6e-12 77.4 54 68.5
AagrBONN_evm.TU.Sc2ySwM_368.1487 Anthoceros agrestis HOM05D001879 ORTHO05D007957 2.6e-09 68.6 141 36.2
Cre13.g568750 Chlamydomonas reinhardtii HOM05D001879 ORTHO05D007957 5.8e-09 67.4 69 49.3


User provided reference genes

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