Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A738G22 Lonicera japonica HOM05D006001 ORTHO05D006714 8.8e-168 594.0 403 100.0
Dinv42605 Davidia involucrata HOM05D006001 ORTHO05D006714 2.4e-40 170.6 408 43.4
GSVIVG01009188001 Vitis vinifera HOM05D006001 ORTHO05D006714 2.1e-36 157.5 414 41.1
CSS0018086 Camellia sinensis var. sinensis HOM05D006001 ORTHO05D006714 4.0e-35 153.3 430 43.7
DCAR_023481 Daucus carota HOM05D006001 ORTHO05D006714 8.9e-35 152.1 430 37.7
Manes.18G058066 Manihot esculenta HOM05D006001 ORTHO05D006714 1.7e-30 137.9 413 33.9
Oeu063699.1 Olea europaea HOM05D006001 ORTHO05D006714 3.0e-30 137.1 413 32.9
Peaxi162Scf00160g00103 Petunia axillaris HOM05D006001 ORTHO05D006714 5.0e-30 136.3 435 32.2
Actinidia19626 Actinidia chinensis HOM05D006001 ORTHO05D006714 1.5e-29 134.8 419 43.0
HanXRQChr03g0093751 Helianthus annuus HOM05D006001 ORTHO05D006714 1.9e-29 134.4 403 35.7
Cc00_g15770 Coffea canephora HOM05D006001 ORTHO05D006714 4.7e-28 129.8 424 31.4
Haze_22467 Corylus avellana HOM05D006001 ORTHO05D006714 4.7e-28 129.8 443 39.1
Haze_22468 Corylus avellana HOM05D006001 ORTHO05D006714 6.2e-28 129.4 442 40.3
Lsat_1_v5_gn_3_133380 Lactuca sativa HOM05D006001 ORTHO05D006714 5.2e-27 126.3 425 36.2
Rhsim07G0212300 Rhododendron simsii HOM05D006001 ORTHO05D006714 8.9e-27 125.6 423 44.9
Nitab4.5_0000354g0120 Nicotiana tabacum HOM05D006001 ORTHO05D006714 2.6e-26 124.0 428 36.2
Cfa013804 Carpinus fangiana HOM05D006001 ORTHO05D006714 3.4e-26 123.6 445 37.8
TAR381G0479 Trochodendron aralioides HOM05D006001 ORTHO05D006714 3.4e-26 123.6 419 34.1
Nn6g34170 Nelumbo nucifera HOM05D006001 ORTHO05D006714 2.2e-25 120.9 416 40.1
QL12p023212 Quercus lobata HOM05D006001 ORTHO05D006714 4.9e-25 119.8 411 33.3
CAN.G1700.2 Capsicum annuum HOM05D006001 ORTHO05D006714 4.1e-24 116.7 421 34.2
QL09p017955 Quercus lobata HOM05D006001 ORTHO05D006714 4.1e-24 116.7 403 37.7
Ciclev10001506m.g Citrus clementina HOM05D006001 ORTHO05D006714 7.0e-24 115.9 413 36.6
Thecc.08G071800 Theobroma cacao HOM05D006001 ORTHO05D006714 1.3e-22 111.7 430 30.7
Eucgr.L02666 Eucalyptus grandis HOM05D006001 ORTHO05D006714 5.0e-22 109.8 420 30.0
Potri.002G111500 Populus trichocarpa HOM05D006001 ORTHO05D006714 5.0e-22 109.8 416 28.6
Eucgr.H00032 Eucalyptus grandis HOM05D006001 ORTHO05D006714 8.6e-22 109.0 420 29.8
Sabra02G0088000 Salix brachista HOM05D006001 ORTHO05D006714 4.3e-21 106.7 422 29.4
Oeu034401.1 Olea europaea HOM05D006001 ORTHO05D006714 9.5e-21 105.5 409 36.4
MBI16_g12475_MAGBIO Magnolia biondii HOM05D006001 ORTHO05D006714 2.1e-20 104.4 404 30.4
CiPaw.03G148200 Carya illinoinensis HOM05D006001 ORTHO05D006714 2.8e-20 104.0 407 34.4
Nitab4.5_0019796g0010 Nicotiana tabacum HOM05D006001 ORTHO05D006714 2.8e-20 104.0 110 50.9
Migut.C00706 Erythranthe guttata HOM05D006001 ORTHO05D006714 8.1e-20 102.4 405 35.6
TWI56G0486 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 1.1e-19 102.1 419 34.8
SGA_v2.0_scaffold24G10238 Striga asiatica HOM05D006001 ORTHO05D006714 1.4e-19 101.7 412 29.4
PGSC0003DMG400002050 Solanum tuberosum HOM05D006001 ORTHO05D006714 8.9e-19 99.0 416 38.0
Prupe.1G533200 Prunus persica HOM05D006001 ORTHO05D006714 1.5e-18 98.2 426 42.3
CiPaw.07G164600 Carya illinoinensis HOM05D006001 ORTHO05D006714 2.6e-18 97.4 443 29.1
PSO210G5625 Papaver somniferum HOM05D006001 ORTHO05D006714 4.4e-18 96.7 413 31.0
SalBow7G4402 Salvia bowleyana HOM05D006001 ORTHO05D006714 4.4e-18 96.7 423 31.7
Cpa.g.c29936.2 Carica papaya HOM05D006001 ORTHO05D006714 5.8e-18 96.3 417 30.2
Sc04g0007160 Simmondsia chinensis HOM05D006001 ORTHO05D006714 1.3e-17 95.1 407 27.3
TWI12G0152 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 1.3e-17 95.1 375 29.6
Atru.chr13.1002 Acer truncatum HOM05D006001 ORTHO05D006714 8.3e-17 92.4 409 33.0
Sopen12g030020 Solanum pennellii HOM05D006001 ORTHO05D006714 8.3e-17 92.4 422 37.7
Potri.005G153300 Populus trichocarpa HOM05D006001 ORTHO05D006714 1.4e-16 91.7 407 30.2
Duzib106G1137 Durio zibethinus HOM05D006001 ORTHO05D006714 2.4e-16 90.9 416 32.9
Duzib128G1071 Durio zibethinus HOM05D006001 ORTHO05D006714 5.4e-16 89.7 419 30.3
SGA_v2.0_scaffold20G09128 Striga asiatica HOM05D006001 ORTHO05D006714 9.2e-16 89.0 408 28.2
ECA240G2279 Erigeron canadensis HOM05D006001 ORTHO05D006714 1.6e-15 88.2 132 49.2
arahy.Tifrunner.gnm1.ann1.5459VI Arachis hypogaea HOM05D006001 ORTHO05D006714 2.7e-15 87.4 401 26.9
Gohir.A05G320600 Gossypium hirsutum HOM05D006001 ORTHO05D006714 7.8e-15 85.9 404 30.2
THA.LOC104806890 Tarenaya hassleriana HOM05D006001 ORTHO05D006714 1.3e-14 85.1 416 27.9
PGR042G0630 Punica granatum HOM05D006001 ORTHO05D006714 1.7e-14 84.7 404 29.5
Glyma.02G215100 Glycine max HOM05D006001 ORTHO05D006714 2.3e-14 84.3 430 34.0
PGSC0003DMG400009339 Solanum tuberosum HOM05D006001 ORTHO05D006714 3.0e-14 84.0 414 26.6
CDE06G2159 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 3.9e-14 83.6 102 47.1
Aqoxy5G01371 Aquilegia oxysepala HOM05D006001 ORTHO05D006714 5.1e-14 83.2 444 40.3
MELO3C021835.2 Cucumis melo HOM05D006001 ORTHO05D006714 6.6e-14 82.8 406 28.8
COL.COLO4_35255 Corchorus olitorius HOM05D006001 ORTHO05D006714 1.5e-13 81.6 408 33.1
Gorai.009G346500 Gossypium raimondii HOM05D006001 ORTHO05D006714 2.5e-13 80.9 402 30.3
Nitab4.5_0000131g0110 Nicotiana tabacum HOM05D006001 ORTHO05D006714 2.5e-13 80.9 85 51.8
PSO170G4643 Papaver somniferum HOM05D006001 ORTHO05D006714 2.5e-13 80.9 416 28.6
Hund26817 Selenicereus undatus HOM05D006001 ORTHO05D006714 3.3e-13 80.5 414 34.3
Sopen04g030170 Solanum pennellii HOM05D006001 ORTHO05D006714 5.6e-13 79.7 415 26.7
CANSAT11G1699 Cannabis sativa HOM05D006001 ORTHO05D006714 7.3e-13 79.3 424 27.1
CsaV3_2G036230 Cucumis sativus L. HOM05D006001 ORTHO05D006714 7.3e-13 79.3 416 29.6
Gohir.D05G322800 Gossypium hirsutum HOM05D006001 ORTHO05D006714 7.3e-13 79.3 411 29.7
CDE04G0496 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 1.2e-12 78.6 131 39.7
ClCG09G016810 Citrullus lanatus HOM05D006001 ORTHO05D006714 1.2e-12 78.6 413 30.0
LjContig00408g0013719 Lotus japonicus HOM05D006001 ORTHO05D006714 1.6e-12 78.2 417 32.4
AL7G28720 Arabidopsis lyrata HOM05D006001 ORTHO05D006714 2.1e-12 77.8 118 39.8
MELO3C008828.2 Cucumis melo HOM05D006001 ORTHO05D006714 2.1e-12 77.8 408 27.7
Solyc04g076410.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 8.1e-12 75.9 413 26.9
Glyma.14G182400 Glycine max HOM05D006001 ORTHO05D006714 1.8e-11 74.7 415 37.8
MD08G1199700 Malus domestica HOM05D006001 ORTHO05D006714 1.8e-11 74.7 408 36.8
Peaxi162Scf00454g00211 Petunia axillaris HOM05D006001 ORTHO05D006714 3.1e-11 73.9 81 48.1
unitig_578.g16728 Utricularia gibba HOM05D006001 ORTHO05D006714 5.2e-11 73.2 425 25.4
AT4G24500 Arabidopsis thaliana HOM05D006001 ORTHO05D006714 2.0e-10 71.2 412 27.2
A01p15870 Brassica napus HOM05D002298 ORTHO05D006714 2.6e-10 70.9 407 26.0
BraA01t01521Z Brassica rapa HOM05D002298 ORTHO05D006714 2.6e-10 70.9 403 26.6
Psat2g065160 Pisum sativum HOM05D006001 ORTHO05D006714 3.4e-10 70.5 425 31.1
arahy.Tifrunner.gnm1.ann1.X0SJ4P Arachis hypogaea HOM05D006001 ORTHO05D006714 4.4e-10 70.1 430 24.7
BolC1t01909H Brassica oleracea HOM05D002298 ORTHO05D006714 7.6e-10 69.3 409 26.7
BcaC09g50862 Brassica carinata HOM05D006001 ORTHO05D006714 1.3e-09 68.6 410 27.1
CDE06G1720 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 1.7e-09 68.2 76 55.3
BcaC06g32880 Brassica carinata HOM05D006001 ORTHO05D006714 2.2e-09 67.8 129 35.7
CAN.G475.17 Capsicum annuum HOM05D006001 ORTHO05D006714 2.9e-09 67.4 78 50.0
C01p19810 Brassica napus HOM05D002298 ORTHO05D006714 3.8e-09 67.0 402 26.1
SHI11237 Sapria himalayana HOM05D006001 ORTHO05D006714 8.4e-09 65.9 84 44.0
Sed0021215 Sechium edule HOM05D006001 ORTHO05D006714 1.1e-08 65.5 127 39.4
ATR0767G016 Amborella trichopoda HOM05D006001 ORTHO05D006714 1.4e-08 65.1 413 36.1
CARHR231890 Cardamine hirsuta HOM05D006001 ORTHO05D006714 1.4e-08 65.1 422 26.1
Carub.0007s1657 Capsella rubella HOM05D006001 ORTHO05D006714 1.9e-08 64.7 414 26.1
Os02g0510300 Oryza sativa ssp. japonica HOM05D034158 ORTHO05D037074 1.9e-08 64.7 123 41.5
Phvul.008G182500 Phaseolus vulgaris HOM05D006001 ORTHO05D006714 2.4e-08 64.3 422 41.0
BraA03t14592Z Brassica rapa HOM05D006001 ORTHO05D006714 4.1e-08 63.5 423 26.2
SEGI_15482 Sequoiadendron giganteum HOM05D006001 ORTHO05D006714 5.4e-08 63.2 139 35.3
PSO144G0019 Papaver somniferum HOM05D006001 ORTHO05D006714 7.1e-08 62.8 70 41.4
Sed0021655 Sechium edule HOM05D006001 ORTHO05D006714 7.1e-08 62.8 81 50.6
Aa31LG4G9600 Aethionema arabicum HOM05D006001 ORTHO05D006714 9.2e-08 62.4 414 26.3
HanXRQChr13g0425801 Helianthus annuus HOM05D006001 ORTHO05D006714 9.2e-08 62.4 81 53.1
Lalb_Chr17g0344581 Lupinus albus HOM05D006001 ORTHO05D006714 9.2e-08 62.4 77 50.6
Nn5g29866 Nelumbo nucifera HOM05D006001 ORTHO05D006714 9.2e-08 62.4 343 30.9
DCAR_002596 Daucus carota HOM05D006001 ORTHO05D006714 1.6e-07 61.6 87 46.0
Thhalv10025760m.g Eutrema salsugineum HOM05D006001 ORTHO05D006714 1.6e-07 61.6 412 26.5
VMungo1127G1493 Vigna mungo HOM05D006001 ORTHO05D006714 2.7e-07 60.8 129 35.7
A03p55330 Brassica napus HOM05D006001 ORTHO05D006714 3.5e-07 60.5 402 24.1
EL10Ac1g00506 Beta vulgaris HOM05D034668 ORTHO05D006714 4.6e-07 60.1 424 39.6
HanXRQChr13g0425001 Helianthus annuus HOM05D006001 ORTHO05D006714 4.6e-07 60.1 85 45.9
Sp7g22490 Schrenkiella parvula HOM05D006001 ORTHO05D006714 6.0e-07 59.7 419 25.8
DCAR_000919 Daucus carota HOM05D006001 ORTHO05D006714 7.8e-07 59.3 87 44.8
Lj6g0019377 Lotus japonicus HOM05D006001 ORTHO05D006714 1.0e-06 58.9 86 39.5
Ca_05452_v3 Cicer arietinum L. HOM05D006001 ORTHO05D006714 1.3e-06 58.5 412 26.5
SEGI_29730 Sequoiadendron giganteum HOM05D006001 ORTHO05D006714 1.3e-06 58.5 103 36.9
Medtr5g066450 Medicago truncatula HOM05D006001 ORTHO05D006714 1.7e-06 58.2 411 24.6
BolC7t45854H Brassica oleracea HOM05D006001 ORTHO05D006714 3.0e-06 57.4 406 24.9
HanXRQChr15g0487561 Helianthus annuus HOM05D006001 ORTHO05D006714 5.1e-06 56.6 68 45.6
SHI11238 Sapria himalayana HOM05D006001 ORTHO05D006714 6.6e-06 56.2 75 49.3
HanXRQChr13g0425671 Helianthus annuus HOM05D006001 ORTHO05D006714 8.7e-06 55.8 78 47.4


User provided reference genes

Program Settings