Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 2.3e-309 1064.7 536 100.0
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 2.5e-242 842.0 546 78.8
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 3.6e-241 838.2 535 79.6
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 4.7e-241 837.8 483 85.5
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 8.8e-240 833.6 531 79.7
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 8.8e-240 833.6 535 79.3
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 2.8e-238 828.6 484 84.7
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 3.7e-238 828.2 535 78.5
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 1.1e-237 826.6 529 78.8
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 4.1e-237 824.7 537 79.3
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 7.0e-237 823.9 482 85.9
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 9.1e-237 823.5 522 79.1
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 1.2e-236 823.2 535 79.3
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 2.7e-236 822.0 523 80.5
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 3.5e-236 821.6 525 80.2
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 3.5e-236 821.6 465 87.1
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 1.5e-234 816.2 523 78.6
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 1.9e-234 815.8 516 80.0
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 2.5e-234 815.5 486 83.5
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 5.5e-234 814.3 486 83.1
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 1.2e-233 813.1 482 82.8
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 1.2e-233 813.1 467 85.4
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 2.1e-233 812.4 522 78.4
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 2.1e-233 812.4 539 76.4
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 2.7e-233 812.0 473 84.4
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 2.7e-233 812.0 485 82.7
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 3.6e-233 811.6 481 83.2
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 3.6e-233 811.6 503 80.7
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 6.1e-233 810.8 472 83.3
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 1.0e-232 810.1 475 83.4
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 1.0e-232 810.1 525 79.0
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 1.4e-232 809.7 474 83.1
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 2.3e-232 808.9 465 84.9
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 2.3e-232 808.9 527 78.9
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 2.3e-232 808.9 525 78.9
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 5.2e-232 807.7 525 78.7
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 8.8e-232 807.0 464 85.1
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 8.8e-232 807.0 496 81.9
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 1.5e-231 806.2 515 79.4
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 2.0e-231 805.8 532 77.1
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 5.7e-231 804.3 531 76.5
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 5.7e-231 804.3 470 83.8
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 1.3e-230 803.1 465 84.7
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.3e-230 803.1 529 76.6
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 2.8e-230 802.0 471 83.2
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 8.3e-230 800.4 476 83.2
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 9.1e-229 797.0 507 78.9
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 2.0e-228 795.8 471 83.4
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 2.0e-228 795.8 478 82.4
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 1.0e-227 793.5 524 76.5
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 2.9e-227 792.0 474 82.1
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 5.0e-227 791.2 528 76.5
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 5.0e-227 791.2 527 76.7
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 6.5e-227 790.8 535 75.1
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 6.5e-227 790.8 524 76.5
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 1.5e-226 789.6 464 84.5
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 1.5e-226 789.6 527 76.5
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 1.9e-226 789.3 521 75.8
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 2.5e-226 788.9 513 78.4
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 3.2e-226 788.5 468 81.4
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 1.6e-225 786.2 519 77.3
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 2.1e-225 785.8 526 75.7
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 4.7e-225 784.6 468 82.3
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 6.1e-225 784.3 464 82.5
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 8.0e-225 783.9 464 82.3
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 1.0e-224 783.5 529 76.2
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 1.4e-224 783.1 464 82.1
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 2.3e-224 782.3 520 76.0
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 3.0e-224 781.9 531 75.7
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 8.8e-224 780.4 476 79.2
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 1.2e-223 780.0 537 74.1
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 1.2e-223 780.0 487 77.8
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 1.5e-223 779.6 524 76.7
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 3.4e-223 778.5 525 74.9
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 9.8e-223 776.9 515 75.1
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 2.2e-222 775.8 522 73.6
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 2.8e-222 775.4 512 74.2
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 8.3e-222 773.9 523 73.4
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 1.1e-221 773.5 463 80.8
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 3.1e-221 771.9 523 73.0
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 7.0e-221 770.8 525 73.7
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 7.0e-221 770.8 523 72.8
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 2.7e-220 768.8 464 79.7
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 1.0e-219 766.9 464 80.2
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 1.3e-219 766.5 523 72.7
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 3.8e-219 765.0 464 80.0
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 5.0e-219 764.6 532 74.1
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 1.9e-218 762.7 557 72.2
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 1.9e-218 762.7 521 72.6
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 2.5e-218 762.3 516 73.6
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 9.5e-218 760.4 523 73.2
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 1.2e-217 760.0 524 72.9
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 2.8e-217 758.8 521 72.9
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 6.1e-217 757.7 526 72.8
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 2.0e-215 752.7 576 68.2
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 2.0e-215 752.7 490 76.9
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 2.2e-214 749.2 545 69.9
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 1.6e-212 743.0 512 73.4
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 3.5e-212 741.9 482 74.9
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 3.0e-211 738.8 519 74.0
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 1.5e-210 736.5 529 71.6
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 9.2e-205 717.2 482 73.2
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 1.7e-203 713.0 453 80.6
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 2.3e-203 712.6 451 82.3
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 9.5e-202 707.2 469 71.0
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 3.6e-201 705.3 478 73.4
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 8.1e-201 704.1 418 81.1
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 1.8e-200 703.0 463 76.2
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 1.8e-200 703.0 450 80.0
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 6.8e-200 701.0 463 73.4
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 6.8e-200 701.0 526 67.7
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 1.2e-199 700.3 525 66.7
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 5.8e-199 698.0 421 81.7
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 3.2e-197 692.2 462 72.3
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 2.5e-194 682.6 503 70.0
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 1.2e-193 680.2 479 74.1
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 1.6e-188 663.3 731 52.4
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 1.6e-188 663.3 450 74.2
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 1.9e-186 656.4 377 84.4
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 3.3e-186 655.6 377 84.9
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 1.5e-183 646.7 393 83.0
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 2.9e-182 642.5 509 67.0
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 3.8e-182 642.1 457 69.8
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 3.3e-178 629.0 457 65.6
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 8.4e-174 614.4 318 98.4
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 1.0e-171 607.4 489 64.0
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 1.8e-171 606.7 468 67.3
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 4.3e-170 602.1 457 66.3
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 2.7e-164 582.8 383 77.5
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.2e-159 567.4 420 72.9
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 1.7e-121 440.7 377 62.9
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 6.1e-116 422.2 242 86.4
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 5.6e-101 372.5 296 64.2
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 1.3e-94 351.3 254 70.1
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 6.6e-94 349.0 455 40.2
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 7.5e-90 335.5 459 39.2
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 5.4e-88 329.3 201 80.1
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 1.9e-85 320.9 457 38.9
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 3.7e-81 306.6 233 67.4
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 5.8e-66 256.1 404 41.1
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 1.1e-61 241.9 131 88.5
Oeu035352.1 Olea europaea HOM05D004194 ORTHO05D005641 1.9e-61 241.1 150 78.7
Psat6g188680 Pisum sativum HOM05D004194 ORTHO05D005641 2.9e-57 227.3 174 67.2
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 1.5e-53 214.9 165 68.5
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 1.4e-51 208.4 200 57.5
SEGI_11237 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 9.0e-43 179.1 98 86.7
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 1.2e-42 178.7 253 43.1
SEGI_18549 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 1.5e-42 178.3 126 64.3
C02p04760 Brassica napus HOM05D004194 ORTHO05D005641 2.6e-42 177.6 135 62.2
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 4.9e-41 173.3 399 29.3
Psat6g188720 Pisum sativum HOM05D001289 ORTHO05D005641 7.1e-40 169.5 126 69.0
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 2.7e-39 167.5 91 87.9
PSO349G0016 Papaver somniferum HOM05D004194 ORTHO05D005641 1.0e-33 149.1 81 88.9
A02p00750 Brassica napus HOM05D004194 ORTHO05D005641 1.1e-32 145.6 93 79.6
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.6e-31 141.7 124 58.1
VMungo0331G0568 Vigna mungo HOM05D004194 ORTHO05D007986 1.1e-27 129.0 100 65.0
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 2.4e-27 127.9 74 85.1
VMungo1127G2164 Vigna mungo HOM05D004194 ORTHO05D007986 2.9e-25 120.9 100 63.0
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 8.5e-25 119.4 294 29.3
BcaNung01906 Brassica carinata HOM05D004194 ORTHO05D005641 1.8e-14 85.1 56 64.3
RcHm_v2.0_Chr6g0244231 Rosa chinensis HOM05D004194 ORTHO05D341107 7.4e-13 79.7 63 66.7
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 4.1e-11 73.9 41 80.5
Psat6g163800 Pisum sativum HOM05D004194 ORTHO05D037373 1.2e-10 72.4 67 52.2
Psat2g086120 Pisum sativum HOM05D004194 ORTHO05D037373 2.6e-10 71.2 47 68.1
Psat5g254960 Pisum sativum HOM05D015311 ORTHO05D321322 1.6e-07 62.0 40 75.0
Psat3g096720 Pisum sativum HOM05D004194 ORTHO05D324018 3.0e-06 57.8 35 71.4


User provided reference genes

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