Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A539T57 Lonicera japonica HOM05D012045 ORTHO05D022857 2.5e-93 345.5 182 100.0
Lj4C551G2 Lonicera japonica HOM05D000021 ORTHO05D000010 1.5e-21 107.1 87 65.5
Lj4P526T16 Lonicera japonica HOM05D012045 ORTHO05D012344 1.1e-19 100.9 182 42.3
Lj4A567T9 Lonicera japonica HOM05D000021 ORTHO05D000010 8.4e-17 91.3 202 35.6
Lj4A536T44 Lonicera japonica HOM05D000021 ORTHO05D000010 1.8e-14 83.6 80 62.5
Lj4P544T12 Lonicera japonica HOM05D000021 ORTHO05D022857 3.9e-14 82.4 54 75.9
Lj4C557G15 Lonicera japonica HOM05D012045 ORTHO05D022857 1.9e-13 80.1 65 73.8
Lj6P539T18 Lonicera japonica HOM05D012045 ORTHO05D012344 1.6e-12 77.0 114 44.7
Carub.0003s2531 Capsella rubella HOM05D000053 ORTHO05D000035 4.8e-12 75.5 159 35.2
Lj6C538T18 Lonicera japonica HOM05D000021 ORTHO05D000010 1.1e-11 74.3 125 42.4
Lj4A532G57 Lonicera japonica HOM05D012045 ORTHO05D022857 3.1e-11 72.8 48 75.0
Cc08_g10200 Coffea canephora HOM05D000021 ORTHO05D000010 6.9e-11 71.6 81 45.7
Lj4A539T58 Lonicera japonica HOM05D012045 ORTHO05D012344 1.5e-10 70.5 115 46.1
Cc04_g14480 Coffea canephora HOM05D041214 ORTHO05D025128 2.6e-10 69.7 137 38.0
Cc11_g02190 Coffea canephora HOM05D000021 ORTHO05D000010 5.8e-10 68.6 170 29.4
Carub.0003s2532 Capsella rubella HOM05D000053 ORTHO05D000035 7.6e-10 68.2 143 34.3
Eucgr.L00585 Eucalyptus grandis HOM05D000071 ORTHO05D000029 7.6e-10 68.2 178 30.3
SalBow6G0706 Salvia bowleyana HOM05D000021 ORTHO05D000010 7.6e-10 68.2 141 32.6
CSS0045315 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 9.9e-10 67.8 199 30.2
CAN.G257.124 Capsicum annuum HOM05D000065 ORTHO05D017765 9.9e-10 67.8 182 32.4
Lj2C302T5 Lonicera japonica HOM05D026455 ORTHO05D034816 9.9e-10 67.8 149 34.2
Prupe.4G064400 Prunus persica HOM05D000021 ORTHO05D000010 1.3e-09 67.4 177 29.9
Lj6C535G12 Lonicera japonica HOM05D000021 ORTHO05D000010 1.7e-09 67.0 45 73.3
Lj4A571G45 Lonicera japonica HOM05D000021 ORTHO05D000010 3.8e-09 65.9 144 38.9
Potri.012G013435 Populus trichocarpa HOM05D000053 ORTHO05D000035 3.8e-09 65.9 145 35.2
CSS0014002 Camellia sinensis var. sinensis HOM05D000311 ORTHO05D000183 4.9e-09 65.5 161 32.3
Carub.0148s0001 Capsella rubella HOM05D000053 ORTHO05D000035 6.4e-09 65.1 143 35.0
CARHR127090 Cardamine hirsuta HOM05D000053 ORTHO05D000035 6.4e-09 65.1 140 34.3
Cc02_g16030 Coffea canephora HOM05D000021 ORTHO05D000010 8.4e-09 64.7 160 33.8
CARHR175550 Cardamine hirsuta HOM05D000053 ORTHO05D000035 1.1e-08 64.3 157 31.2
HanXRQChr04g0119411 Helianthus annuus HOM05D021068 ORTHO05D017485 1.1e-08 64.3 98 38.8
Dinv24270 Davidia involucrata HOM05D000071 ORTHO05D000029 1.4e-08 63.9 161 33.5
CSS0038481 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 1.9e-08 63.5 200 27.5
CAN.G404.29 Capsicum annuum HOM05D000021 ORTHO05D000010 1.9e-08 63.5 132 37.9
Cfa012375 Carpinus fangiana HOM05D000071 ORTHO05D000029 2.4e-08 63.2 161 34.8
Nitab4.5_0001288g0090 Nicotiana tabacum HOM05D000021 ORTHO05D000010 2.4e-08 63.2 158 32.3
Sabra12G0005000 Salix brachista HOM05D000053 ORTHO05D000035 2.4e-08 63.2 142 36.6
AT3G25020 Arabidopsis thaliana HOM05D000053 ORTHO05D000035 3.2e-08 62.8 164 31.7
HanXRQChr17g0552541 Helianthus annuus HOM05D000071 ORTHO05D000029 3.2e-08 62.8 160 32.5
AT3G25010 Arabidopsis thaliana HOM05D000053 ORTHO05D000035 4.2e-08 62.4 148 33.1
AUR62015956 Chenopodium quinoa HOM05D000071 ORTHO05D000029 4.2e-08 62.4 150 34.0
PSO566G0066 Papaver somniferum HOM05D000021 ORTHO05D000010 4.2e-08 62.4 163 32.5
QL10p003503 Quercus lobata HOM05D000071 ORTHO05D000029 4.2e-08 62.4 151 30.5
Cc09_g06900 Coffea canephora HOM05D000021 ORTHO05D000010 7.1e-08 61.6 86 43.0
Haze_06201 Corylus avellana HOM05D000021 ORTHO05D000010 7.1e-08 61.6 78 43.6
Thecc.05G213100 Theobroma cacao HOM05D000021 ORTHO05D000010 7.1e-08 61.6 155 29.0
Oeu021012.1 Olea europaea HOM05D001506 ORTHO05D000455 9.3e-08 61.2 162 32.1
Psat1g119400 Pisum sativum HOM05D000021 ORTHO05D000010 9.3e-08 61.2 149 32.2
Mapoly0049s0132 Marchantia polymorpha HOM05D000094 ORTHO05D002388 1.2e-07 60.8 155 32.9
Duzib036G0003 Durio zibethinus HOM05D000021 ORTHO05D000010 1.6e-07 60.5 60 51.7
HanXRQChr15g0464721 Helianthus annuus HOM05D000053 ORTHO05D000035 1.6e-07 60.5 178 32.6
Lj4A536T43 Lonicera japonica HOM05D000021 ORTHO05D012344 1.6e-07 60.5 31 93.5
Prupe.4G213400 Prunus persica HOM05D000021 ORTHO05D000010 1.6e-07 60.5 123 30.1
Sabra11G0082900 Salix brachista HOM05D000021 ORTHO05D000010 1.6e-07 60.5 158 31.6
Sabra12G0005800 Salix brachista HOM05D000482 ORTHO05D000349 1.6e-07 60.5 142 34.5
AUR62011988 Chenopodium quinoa HOM05D000592 ORTHO05D001485 2.1e-07 60.1 169 31.4
Oeu038894.1 Olea europaea HOM05D000071 ORTHO05D000029 2.1e-07 60.1 147 31.3
TWI14G1242 Tripterygium wilfordii HOM05D000021 ORTHO05D000010 2.1e-07 60.1 156 31.4
CAN.G189.68 Capsicum annuum HOM05D000021 ORTHO05D000010 2.7e-07 59.7 143 32.2
CAN.G208.71 Capsicum annuum HOM05D000053 ORTHO05D000035 2.7e-07 59.7 152 33.6
CARHR116010 Cardamine hirsuta HOM05D000053 ORTHO05D000035 2.7e-07 59.7 174 30.5
Gohir.D11G308200 Gossypium hirsutum HOM05D000071 ORTHO05D000029 2.7e-07 59.7 156 33.3
Nn8g39596 Nelumbo nucifera HOM05D000311 ORTHO05D000183 2.7e-07 59.7 151 31.1
Prupe.8G217400 Prunus persica HOM05D000132 ORTHO05D000058 2.7e-07 59.7 158 30.4
PGR031G1664 Punica granatum HOM05D000053 ORTHO05D000448 2.7e-07 59.7 141 31.9
RhsimUnG0134000 Rhododendron simsii HOM05D008944 ORTHO05D012715 2.7e-07 59.7 154 30.5
AT3G24900 Arabidopsis thaliana HOM05D000053 ORTHO05D000035 3.5e-07 59.3 157 29.9
CiPaw.10G129600 Carya illinoinensis HOM05D000021 ORTHO05D000010 3.5e-07 59.3 177 32.2
Ciclev10014011m.g Citrus clementina HOM05D000021 ORTHO05D000010 3.5e-07 59.3 84 39.3
GSVIVG01021645001 Vitis vinifera HOM05D000021 ORTHO05D000010 3.5e-07 59.3 189 29.1
BolC4t27360H Brassica oleracea HOM05D000053 ORTHO05D000035 4.6e-07 58.9 142 35.9
CiPaw.04G193500 Carya illinoinensis HOM05D000053 ORTHO05D000035 4.6e-07 58.9 165 30.3
Haze_05430 Corylus avellana HOM05D000021 ORTHO05D000010 4.6e-07 58.9 100 38.0
FvH4_5g20780 Fragaria vesca HOM05D000071 ORTHO05D000029 4.6e-07 58.9 148 29.7
FAN18G4569 Fragaria x ananassa HOM05D000071 ORTHO05D000029 4.6e-07 58.9 148 29.7
Nitab4.5_0000072g0270 Nicotiana tabacum HOM05D000021 ORTHO05D000010 4.6e-07 58.9 177 28.8
Pp3c20_20430 Physcomitrium patens HOM05D009352 ORTHO05D017073 4.6e-07 58.9 167 30.5
Potri.012G026900 Populus trichocarpa HOM05D000053 ORTHO05D000035 4.6e-07 58.9 150 34.7
QL05p009911 Quercus lobata HOM05D000071 ORTHO05D000029 4.6e-07 58.9 151 31.1
Sed0013067 Sechium edule HOM05D000094 ORTHO05D005974 4.6e-07 58.9 164 31.1
GSVIVG01020735001 Vitis vinifera HOM05D000021 ORTHO05D440116 4.6e-07 58.9 163 30.7
Ah.02g124770 Amaranthus hybridus HOM05D001705 ORTHO05D002725 6.0e-07 58.5 142 36.6
CAN.G158.29 Capsicum annuum HOM05D000053 ORTHO05D000001 6.0e-07 58.5 169 30.2
Ciclev10004045m.g Citrus clementina HOM05D000311 ORTHO05D000183 6.0e-07 58.5 167 33.5
Haze_23090 Corylus avellana HOM05D001506 ORTHO05D000455 6.0e-07 58.5 161 26.7
Nitab4.5_0004221g0060 Nicotiana tabacum HOM05D000021 ORTHO05D012344 6.0e-07 58.5 147 32.7
Peaxi162Scf00205g00723 Petunia axillaris HOM05D000021 ORTHO05D012344 6.0e-07 58.5 158 31.6
Atru.chr2.2018 Acer truncatum HOM05D000054 ORTHO05D000171 7.9e-07 58.2 81 40.7
BolC4t27621H Brassica oleracea HOM05D000053 ORTHO05D000035 7.9e-07 58.2 150 32.7
CAN.G1909.7 Capsicum annuum HOM05D000021 ORTHO05D000010 7.9e-07 58.2 162 30.2
DCAR_027544 Daucus carota HOM05D000164 ORTHO05D175069 7.9e-07 58.2 145 32.4
Eucgr.C03748 Eucalyptus grandis HOM05D000021 ORTHO05D000010 7.9e-07 58.2 99 43.4
Gorai.009G444500 Gossypium raimondii HOM05D000053 ORTHO05D000035 7.9e-07 58.2 174 30.5
Lj3P711T17 Lonicera japonica HOM05D000021 ORTHO05D000010 7.9e-07 58.2 157 31.8
Sp4g14900 Schrenkiella parvula HOM05D000053 ORTHO05D000035 7.9e-07 58.2 158 29.1
TPR.G32239 Trifolium pratense HOM05D000021 ORTHO05D000010 7.9e-07 58.2 55 50.9
CiPaw.14G127500 Carya illinoinensis HOM05D001506 ORTHO05D000455 1.0e-06 57.8 163 28.8
CiPaw.14G127900 Carya illinoinensis HOM05D001506 ORTHO05D000455 1.0e-06 57.8 163 28.8
Migut.F01644 Erythranthe guttata HOM05D000053 ORTHO05D000035 1.0e-06 57.8 145 32.4
Migut.G01066 Erythranthe guttata HOM05D000021 ORTHO05D000010 1.0e-06 57.8 153 28.8
TPR.G30193 Trifolium pratense HOM05D000071 ORTHO05D000029 1.0e-06 57.8 157 30.6
AL3G40700 Arabidopsis lyrata HOM05D000053 ORTHO05D000035 1.3e-06 57.4 145 33.8
CAN.G1002.29 Capsicum annuum HOM05D000053 ORTHO05D000035 1.3e-06 57.4 153 34.0
COL.COLO4_37325 Corchorus olitorius HOM05D000021 ORTHO05D000010 1.3e-06 57.4 84 44.0
Haze_09392 Corylus avellana HOM05D000021 ORTHO05D000010 1.3e-06 57.4 84 45.2
HanXRQChr03g0066231 Helianthus annuus HOM05D000071 ORTHO05D000029 1.3e-06 57.4 149 31.5
Mapoly0145s0032 Marchantia polymorpha HOM05D000054 ORTHO05D011578 1.3e-06 57.4 136 32.4
Prupe.4G162800 Prunus persica HOM05D001506 ORTHO05D000455 1.3e-06 57.4 156 29.5
BcaC02g07967 Brassica carinata HOM05D000053 ORTHO05D000035 1.8e-06 57.0 159 30.2
Cc10_g10750 Coffea canephora HOM05D026455 ORTHO05D034816 1.8e-06 57.0 158 29.1
Lj4C525G1 Lonicera japonica HOM05D000021 ORTHO05D000010 1.8e-06 57.0 36 77.8
Peaxi162Scf00299g00016 Petunia axillaris HOM05D000053 ORTHO05D000035 1.8e-06 57.0 159 30.2
RcHm_v2.0_Chr5g0082221 Rosa chinensis HOM05D001506 ORTHO05D000455 1.8e-06 57.0 160 31.2
RcHm_v2.0_Chr7g0213321 Rosa chinensis HOM05D000021 ORTHO05D000010 1.8e-06 57.0 57 45.6
Sabra12G0005500 Salix brachista HOM05D000482 ORTHO05D000035 1.8e-06 57.0 149 36.2
PGSC0003DMG400022067 Solanum tuberosum HOM05D000053 ORTHO05D000448 1.8e-06 57.0 148 33.1
TWI77G0225 Tripterygium wilfordii HOM05D000021 ORTHO05D000010 1.8e-06 57.0 49 55.1
Aqoxy6G01491 Aquilegia oxysepala HOM05D000029 ORTHO05D002500 2.3e-06 56.6 157 31.2
A04p24500 Brassica napus HOM05D000053 ORTHO05D000035 2.3e-06 56.6 131 30.5
A09p51750 Brassica napus HOM05D000053 ORTHO05D000035 2.3e-06 56.6 140 30.0
BraA09t40611Z Brassica rapa HOM05D000053 ORTHO05D000035 2.3e-06 56.6 140 30.0
Cpa.g.sc386.6 Carica papaya HOM05D000021 ORTHO05D000010 2.3e-06 56.6 44 59.1
Cc02_g14780 Coffea canephora HOM05D000021 ORTHO05D000010 2.3e-06 56.6 182 30.8
Gohir.A11G294123 Gossypium hirsutum HOM05D000071 ORTHO05D000029 2.3e-06 56.6 167 31.1
Nitab4.5_0002185g0040 Nicotiana tabacum HOM05D000021 ORTHO05D000010 2.3e-06 56.6 55 52.7
AUR62029210 Chenopodium quinoa HOM05D000053 ORTHO05D000035 3.0e-06 56.2 160 30.0
Ciclev10023311m.g Citrus clementina HOM05D000021 ORTHO05D000010 3.0e-06 56.2 43 58.1
Haze_05269 Corylus avellana HOM05D000071 ORTHO05D000029 3.0e-06 56.2 140 31.4
Prupe.2G169200 Prunus persica HOM05D000071 ORTHO05D000029 3.0e-06 56.2 157 31.2
RcHm_v2.0_Chr6g0275331 Rosa chinensis HOM05D000071 ORTHO05D000029 3.0e-06 56.2 175 30.3
CAN.G484.19 Capsicum annuum HOM05D000053 ORTHO05D000035 3.9e-06 55.8 152 31.6
Dinv01918 Davidia involucrata HOM05D000071 ORTHO05D003524 3.9e-06 55.8 179 31.8
Migut.J01792 Erythranthe guttata HOM05D000029 ORTHO05D008567 3.9e-06 55.8 156 32.7
Cfa016333 Carpinus fangiana HOM05D000071 ORTHO05D000029 5.1e-06 55.5 156 32.7
CiPaw.01G038500 Carya illinoinensis HOM05D000021 ORTHO05D000010 5.1e-06 55.5 45 60.0
CiPaw.10G102200 Carya illinoinensis HOM05D000021 ORTHO05D000010 5.1e-06 55.5 42 64.3
CiPaw.13G169000 Carya illinoinensis HOM05D001506 ORTHO05D000455 5.1e-06 55.5 145 29.7
AUR62025942 Chenopodium quinoa HOM05D000053 ORTHO05D000035 5.1e-06 55.5 160 31.2
Cc09_g05670 Coffea canephora HOM05D000021 ORTHO05D000010 5.1e-06 55.5 60 50.0
Duzib128G0811 Durio zibethinus HOM05D000053 ORTHO05D000448 5.1e-06 55.5 153 34.0
Peaxi162Scf00062g00217 Petunia axillaris HOM05D000053 ORTHO05D000035 5.1e-06 55.5 162 30.9
Psat7g243640 Pisum sativum HOM05D000053 ORTHO05D000448 5.1e-06 55.5 158 32.3
SalBow6G2453 Salvia bowleyana HOM05D000517 ORTHO05D003374 5.1e-06 55.5 155 31.0
AT3G23010 Arabidopsis thaliana HOM05D000053 ORTHO05D000035 6.7e-06 55.1 136 30.1
C04p58340 Brassica napus HOM05D000053 ORTHO05D000035 6.7e-06 55.1 144 33.3
C04p61350 Brassica napus HOM05D000053 ORTHO05D000035 6.7e-06 55.1 161 27.3
CiPaw.01G038900 Carya illinoinensis HOM05D000021 ORTHO05D000010 6.7e-06 55.1 49 57.1
CiPaw.04G193300 Carya illinoinensis HOM05D000053 ORTHO05D000035 6.7e-06 55.1 144 31.2
AUR62011364 Chenopodium quinoa HOM05D005785 ORTHO05D007962 6.7e-06 55.1 132 31.8
Ciclev10018259m.g Citrus clementina HOM05D000021 ORTHO05D000010 6.7e-06 55.1 161 31.7
Ciclev10027121m.g Citrus clementina HOM05D000021 ORTHO05D000010 6.7e-06 55.1 49 55.1
Eucgr.L02095 Eucalyptus grandis HOM05D000311 ORTHO05D000183 6.7e-06 55.1 149 28.2
FAN21G1122 Fragaria x ananassa HOM05D000021 ORTHO05D000010 6.7e-06 55.1 141 27.7
Gohir.D11G308300 Gossypium hirsutum HOM05D000071 ORTHO05D000029 6.7e-06 55.1 165 33.3
HanXRQChr04g0119481 Helianthus annuus HOM05D021068 ORTHO05D017485 6.7e-06 55.1 101 35.6
Nitab4.5_0004221g0070 Nicotiana tabacum HOM05D000021 ORTHO05D022857 6.7e-06 55.1 132 34.8
Sed0023420 Sechium edule HOM05D000311 ORTHO05D000183 6.7e-06 55.1 166 26.5
Thecc.02G277200 Theobroma cacao HOM05D000071 ORTHO05D000029 6.7e-06 55.1 145 31.7
GSVIVG01028777001 Vitis vinifera HOM05D000071 ORTHO05D000029 6.7e-06 55.1 144 31.2
BcaC02g08104 Brassica carinata HOM05D000053 ORTHO05D000035 8.7e-06 54.7 142 33.8
C02p29020 Brassica napus HOM05D000053 ORTHO05D000035 8.7e-06 54.7 141 29.8
CAN.G1363.3 Capsicum annuum HOM05D000021 ORTHO05D000010 8.7e-06 54.7 136 33.8
AUR62002982 Chenopodium quinoa HOM05D000312 ORTHO05D002725 8.7e-06 54.7 136 31.6
AUR62007789 Chenopodium quinoa HOM05D000312 ORTHO05D002725 8.7e-06 54.7 135 31.1
Duzib212G0987 Durio zibethinus HOM05D000311 ORTHO05D000183 8.7e-06 54.7 171 28.7
Gohir.D01G042730 Gossypium hirsutum HOM05D000053 ORTHO05D000035 8.7e-06 54.7 156 29.5
Gohir.D01G042736 Gossypium hirsutum HOM05D000053 ORTHO05D000035 8.7e-06 54.7 156 29.5
Gorai.002G060300 Gossypium raimondii HOM05D000053 ORTHO05D000035 8.7e-06 54.7 156 29.5
Medtr6g040230 Medicago truncatula HOM05D001327 ORTHO05D002270 8.7e-06 54.7 156 30.8
Nitab4.5_0002185g0100 Nicotiana tabacum HOM05D000021 ORTHO05D000010 8.7e-06 54.7 96 41.7
Nitab4.5_0007465g0030 Nicotiana tabacum HOM05D000021 ORTHO05D000010 8.7e-06 54.7 258 24.8
Prupe.4G057800 Prunus persica HOM05D000021 ORTHO05D000010 8.7e-06 54.7 157 29.3
Prupe.4G063300 Prunus persica HOM05D000021 ORTHO05D000010 8.7e-06 54.7 152 30.9
SalBow6G3760 Salvia bowleyana HOM05D000021 ORTHO05D000010 8.7e-06 54.7 84 39.3


User provided reference genes

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