Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A511G17 Lonicera japonica HOM05D003823 ORTHO05D004866 6.8e-81 303.9 151 100.0
Lsat_1_v5_gn_2_88881 Lactuca sativa HOM05D003823 ORTHO05D004866 1.3e-68 263.1 187 74.9
ECA238G0538 Erigeron canadensis HOM05D003823 ORTHO05D004866 2.3e-68 262.3 187 73.8
HanXRQChr02g0056361 Helianthus annuus HOM05D003823 ORTHO05D004866 3.0e-68 261.9 187 74.3
HanXRQChr14g0449901 Helianthus annuus HOM05D003823 ORTHO05D004866 5.1e-68 261.2 187 74.3
Dinv06526 Davidia involucrata HOM05D003823 ORTHO05D004866 2.5e-67 258.8 188 72.9
Cc07_g03190 Coffea canephora HOM05D003823 ORTHO05D004866 3.3e-67 258.5 188 72.9
CANSAT80G0583 Cannabis sativa HOM05D003823 ORTHO05D004866 4.3e-67 258.1 188 71.8
vmacro18202 Vaccinium macrocarpon HOM05D003823 ORTHO05D004866 5.6e-67 257.7 188 72.9
Actinidia02709 Actinidia chinensis HOM05D003823 ORTHO05D004866 7.3e-67 257.3 188 72.9
SalBow6G5762 Salvia bowleyana HOM05D003823 ORTHO05D004866 7.3e-67 257.3 189 70.9
Nn8g40950 Nelumbo nucifera HOM05D003823 ORTHO05D004866 9.6e-67 256.9 187 72.2
MSTRG.9636 Avicennia marina HOM05D003823 ORTHO05D004866 1.6e-66 256.1 188 71.8
CSS0031728 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.6e-66 256.1 185 73.5
CSS0041610 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.6e-66 256.1 185 73.5
CSS0049183 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.6e-66 256.1 185 73.5
Zm00001eb203950 Zea mays HOM05D003823 ORTHO05D004866 1.6e-66 256.1 185 73.0
Cc04_g17180 Coffea canephora HOM05D003823 ORTHO05D004866 2.1e-66 255.8 190 71.1
CiPaw.11G041500 Carya illinoinensis HOM05D003823 ORTHO05D004866 2.8e-66 255.4 189 70.4
MBI02_g36598_MAGBIO Magnolia biondii HOM05D003823 ORTHO05D004866 3.6e-66 255.0 188 71.3
MD06G1190100 Malus domestica HOM05D003823 ORTHO05D004866 3.6e-66 255.0 187 71.7
MD14G1197000 Malus domestica HOM05D003823 ORTHO05D004866 3.6e-66 255.0 187 71.7
RcHm_v2.0_Chr7g0180841 Rosa chinensis HOM05D003823 ORTHO05D004866 3.6e-66 255.0 187 71.7
TWI60G1055 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 3.6e-66 255.0 187 71.7
TWI81G0804 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 3.6e-66 255.0 187 71.7
Nn4g23085 Nelumbo nucifera HOM05D003823 ORTHO05D004866 4.8e-66 254.6 187 71.7
TAR374G1522 Trochodendron aralioides HOM05D003823 ORTHO05D004866 4.8e-66 254.6 188 71.3
Cfa018968 Carpinus fangiana HOM05D000046 ORTHO05D004866 6.2e-66 254.2 187 71.1
Glyma.02G268600 Glycine max HOM05D003823 ORTHO05D004866 6.2e-66 254.2 186 71.5
Hund02662 Selenicereus undatus HOM05D003823 ORTHO05D004866 6.2e-66 254.2 184 72.8
AUR62027457 Chenopodium quinoa HOM05D003823 ORTHO05D004866 8.1e-66 253.8 184 72.3
AUR62031242 Chenopodium quinoa HOM05D003823 ORTHO05D004866 8.1e-66 253.8 184 72.3
Potri.001G354000 Populus trichocarpa HOM05D003823 ORTHO05D004866 8.1e-66 253.8 187 72.2
QL10p016165 Quercus lobata HOM05D003823 ORTHO05D004866 8.1e-66 253.8 187 70.6
VMungo0647G1166 Vigna mungo HOM05D003823 ORTHO05D004866 8.1e-66 253.8 186 71.0
GSVIVG01020043001 Vitis vinifera HOM05D003823 ORTHO05D004866 8.1e-66 253.8 188 70.7
Duzib268G0082 Durio zibethinus HOM05D003823 ORTHO05D004866 1.1e-65 253.4 188 70.7
Gohir.A12G166100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.1e-65 253.4 186 71.5
Gohir.D12G169500 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.1e-65 253.4 187 71.1
Phvul.008G213700 Phaseolus vulgaris HOM05D003823 ORTHO05D004866 1.1e-65 253.4 186 70.4
PGR083G1126 Punica granatum HOM05D003823 ORTHO05D004866 1.4e-65 253.1 187 71.1
Rhsim08G0068000 Rhododendron simsii HOM05D003823 ORTHO05D004866 1.4e-65 253.1 200 68.5
ClCG06G016300 Citrullus lanatus HOM05D003823 ORTHO05D004866 1.8e-65 252.7 185 71.4
MELO3C017163.2 Cucumis melo HOM05D003823 ORTHO05D004866 1.8e-65 252.7 185 71.4
CsaV3_1G002230 Cucumis sativus L. HOM05D003823 ORTHO05D004866 1.8e-65 252.7 185 71.4
Duzib251G0021 Durio zibethinus HOM05D003823 ORTHO05D004866 1.8e-65 252.7 185 71.9
Glyma.14G048800 Glycine max HOM05D003823 ORTHO05D004866 1.8e-65 252.7 186 71.0
Os02g0265400 Oryza sativa ssp. japonica HOM05D003823 ORTHO05D004866 1.8e-65 252.7 185 71.9
PSO017G2864 Papaver somniferum HOM05D003823 ORTHO05D004866 1.8e-65 252.7 185 71.9
Thecc.02G351700 Theobroma cacao HOM05D003823 ORTHO05D004866 1.8e-65 252.7 185 71.4
Sc12g0006240 Simmondsia chinensis HOM05D003823 ORTHO05D004866 2.4e-65 252.3 187 71.1
TAR622G1107 Trochodendron aralioides HOM05D003823 ORTHO05D004866 2.4e-65 252.3 185 71.9
FvH4_5g15250 Fragaria vesca HOM05D003823 ORTHO05D004866 3.1e-65 251.9 184 71.7
FAN04G0558 Fragaria x ananassa HOM05D003823 ORTHO05D004866 3.1e-65 251.9 184 71.7
FAN08G0194 Fragaria x ananassa HOM05D003823 ORTHO05D004866 3.1e-65 251.9 184 71.7
FAN13G2005 Fragaria x ananassa HOM05D003823 ORTHO05D004866 3.1e-65 251.9 184 71.7
FAN18G4237 Fragaria x ananassa HOM05D003823 ORTHO05D004866 3.1e-65 251.9 184 71.7
Gorai.008G182100 Gossypium raimondii HOM05D003823 ORTHO05D004866 3.1e-65 251.9 187 70.6
Peaxi162Scf00009g00217 Petunia axillaris HOM05D003823 ORTHO05D004866 3.1e-65 251.9 184 72.3
Prupe.5G189200 Prunus persica HOM05D003823 ORTHO05D004866 3.1e-65 251.9 186 71.0
Actinidia37644 Actinidia chinensis HOM05D003823 ORTHO05D004866 4.0e-65 251.5 185 71.9
CAN.G1305.7 Capsicum annuum HOM05D003823 ORTHO05D004866 4.0e-65 251.5 185 71.9
Ca_16285_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 4.0e-65 251.5 186 69.9
Migut.D02333 Erythranthe guttata HOM05D003823 ORTHO05D004866 4.0e-65 251.5 184 71.2
Nitab4.5_0000785g0070 Nicotiana tabacum HOM05D003823 ORTHO05D004866 4.0e-65 251.5 185 71.9
Nitab4.5_0010010g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 4.0e-65 251.5 185 71.9
Solyc03g113020.3 Solanum lycopersicum HOM05D003823 ORTHO05D004866 4.0e-65 251.5 185 71.9
Sopen03g032100 Solanum pennellii HOM05D003823 ORTHO05D004866 4.0e-65 251.5 185 71.9
PSO478G3470 Papaver somniferum HOM05D003823 ORTHO05D004866 5.3e-65 251.1 185 71.4
PGSC0003DMG400018144 Solanum tuberosum HOM05D003823 ORTHO05D004866 5.3e-65 251.1 185 71.4
EL10Ac8g19266 Beta vulgaris HOM05D003823 ORTHO05D004866 6.9e-65 250.8 184 71.7
Cpa.g.sc388.5 Carica papaya HOM05D003823 ORTHO05D004866 6.9e-65 250.8 186 70.4
Dinv38684 Davidia involucrata HOM05D003823 ORTHO05D004866 6.9e-65 250.8 188 70.2
Oeu022626.1 Olea europaea HOM05D003823 ORTHO05D004866 6.9e-65 250.8 186 70.4
Sed0017565 Sechium edule HOM05D003823 ORTHO05D004866 6.9e-65 250.8 186 71.0
Migut.D02334 Erythranthe guttata HOM05D003823 ORTHO05D004866 9.0e-65 250.4 186 70.4
TPR.G25673 Trifolium pratense HOM05D003823 ORTHO05D004866 9.0e-65 250.4 186 69.9
Sabra16G0232900 Salix brachista HOM05D003823 ORTHO05D004866 1.2e-64 250.0 187 71.1
Thecc.03G082400 Theobroma cacao HOM05D003823 ORTHO05D004866 1.2e-64 250.0 187 70.6
ATR0564G299 Amborella trichopoda HOM05D003823 ORTHO05D004866 1.5e-64 249.6 185 71.4
Aqoxy3G03322 Aquilegia oxysepala HOM05D003823 ORTHO05D004866 1.5e-64 249.6 187 70.6
CDE02G3183 Ceratophyllum demersum HOM05D003823 ORTHO05D004866 1.5e-64 249.6 183 70.5
Duzib084G0821 Durio zibethinus HOM05D003823 ORTHO05D004866 1.5e-64 249.6 187 70.1
Lalb_Chr25g0280071 Lupinus albus HOM05D003823 ORTHO05D004866 1.5e-64 249.6 185 70.8
Manes.14G076100 Manihot esculenta HOM05D003823 ORTHO05D004866 1.5e-64 249.6 187 70.6
Psat5g111480 Pisum sativum HOM05D003823 ORTHO05D004866 1.5e-64 249.6 185 70.3
Eucgr.K02462 Eucalyptus grandis HOM05D003823 ORTHO05D004866 2.0e-64 249.2 207 65.2
Gohir.D11G033300 Gossypium hirsutum HOM05D003823 ORTHO05D004866 2.0e-64 249.2 187 70.6
Gorai.007G036100 Gossypium raimondii HOM05D003823 ORTHO05D004866 2.0e-64 249.2 187 70.6
Medtr3g080480 Medicago truncatula HOM05D003823 ORTHO05D004866 2.0e-64 249.2 185 70.8
TPR.G29042 Trifolium pratense HOM05D003823 ORTHO05D004866 2.0e-64 249.2 185 70.3
Ciclev10022411m.g Citrus clementina HOM05D003823 ORTHO05D004866 2.6e-64 248.8 185 70.3
Psat2g025840 Pisum sativum HOM05D003823 ORTHO05D004866 2.6e-64 248.8 186 69.4
Ca_06062_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 3.4e-64 248.4 186 69.9
Ca_30714_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 3.4e-64 248.4 186 69.9
COL.COLO4_22965 Corchorus olitorius HOM05D003823 ORTHO05D004866 3.4e-64 248.4 185 70.3
Manes.05G098825 Manihot esculenta HOM05D003823 ORTHO05D004866 3.4e-64 248.4 185 70.8
Oeu006179.1 Olea europaea HOM05D003823 ORTHO05D004866 3.4e-64 248.4 188 68.6
Potri.011G077900 Populus trichocarpa HOM05D003823 ORTHO05D004866 3.4e-64 248.4 187 70.1
Atru.chr11.1839 Acer truncatum HOM05D003823 ORTHO05D004866 5.8e-64 247.7 185 70.8
Gohir.A11G029891 Gossypium hirsutum HOM05D003823 ORTHO05D004866 5.8e-64 247.7 187 70.1
Lj4g0027914 Lotus japonicus HOM05D003823 ORTHO05D004866 5.8e-64 247.7 186 69.4
Medtr5g085380 Medicago truncatula HOM05D003823 ORTHO05D004866 5.8e-64 247.7 186 68.8
HPP92_020326 Vanilla planifolia HOM05D003823 ORTHO05D004866 5.8e-64 247.7 193 67.9
Zm00001eb237810 Zea mays HOM05D003823 ORTHO05D004866 5.8e-64 247.7 185 70.3
THA.LOC104819434 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 9.9e-64 246.9 188 69.1
Rhsim08G0157700 Rhododendron simsii HOM05D003823 ORTHO05D004866 1.7e-63 246.1 187 69.0
Atru.chr4.927 Acer truncatum HOM05D003823 ORTHO05D004866 2.2e-63 245.7 185 70.8
Dinv19933 Davidia involucrata HOM05D003823 ORTHO05D004866 2.2e-63 245.7 190 68.9
Ciclev10032832m.g Citrus clementina HOM05D003823 ORTHO05D004866 4.9e-63 244.6 185 70.3
DCAR_026066 Daucus carota HOM05D003823 ORTHO05D004866 6.4e-63 244.2 185 70.8
BcaB01g00874 Brassica carinata HOM05D003823 ORTHO05D004866 8.4e-63 243.8 188 68.1
BcaC01g01774 Brassica carinata HOM05D003823 ORTHO05D004866 8.4e-63 243.8 188 67.6
BcaC01g02292 Brassica carinata HOM05D003823 ORTHO05D004866 8.4e-63 243.8 188 68.1
A06p19840 Brassica napus HOM05D003823 ORTHO05D004866 8.4e-63 243.8 188 68.1
A06p27290 Brassica napus HOM05D003823 ORTHO05D004866 8.4e-63 243.8 188 68.1
C03p66970 Brassica napus HOM05D003823 ORTHO05D004866 8.4e-63 243.8 188 68.1
C03p72020 Brassica napus HOM05D003823 ORTHO05D004866 8.4e-63 243.8 188 67.6
BolC3t18970H Brassica oleracea HOM05D003823 ORTHO05D004866 8.4e-63 243.8 188 68.1
BolC3t19499H Brassica oleracea HOM05D003823 ORTHO05D004866 8.4e-63 243.8 188 67.6
BraA06t25064Z Brassica rapa HOM05D003823 ORTHO05D004866 8.4e-63 243.8 188 68.1
BraA06t25670Z Brassica rapa HOM05D003823 ORTHO05D004866 8.4e-63 243.8 188 68.1
Lj4A501G12 Lonicera japonica HOM05D003823 ORTHO05D004866 8.4e-63 243.8 120 98.3
Sp5g14150 Schrenkiella parvula HOM05D003823 ORTHO05D004866 8.4e-63 243.8 188 68.1
Sed0002791 Sechium edule HOM05D003823 ORTHO05D004866 8.4e-63 243.8 187 69.0
THA.LOC104821437 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 1.4e-62 243.0 190 67.4
Thhalv10010746m.g Eutrema salsugineum HOM05D003823 ORTHO05D004866 2.4e-62 242.3 188 67.6
Mapoly0081s0078 Marchantia polymorpha HOM05D003823 ORTHO05D004866 9.3e-62 240.4 182 68.7
CARHR156490 Cardamine hirsuta HOM05D003823 ORTHO05D004866 1.2e-61 240.0 188 66.5
Pp3c11_12990 Physcomitrium patens HOM05D003823 ORTHO05D004866 2.1e-61 239.2 182 68.7
Aa31LG4G16460 Aethionema arabicum HOM05D003823 ORTHO05D004866 2.7e-61 238.8 188 65.4
SMO116G0153 Selaginella moellendorffii HOM05D003823 ORTHO05D004866 3.5e-61 238.4 193 64.8
Lj5A113G71 Lonicera japonica HOM05D003823 ORTHO05D004866 4.6e-61 238.0 197 66.0
BcaB02g10689 Brassica carinata HOM05D003823 ORTHO05D004866 1.0e-60 236.9 188 66.5
AT3G47810 Arabidopsis thaliana HOM05D003823 ORTHO05D004866 1.1e-59 233.4 188 65.4
AL5G27100 Arabidopsis lyrata HOM05D003823 ORTHO05D004866 1.5e-59 233.0 188 65.4
CBR_g29439 Chara braunii HOM05D003823 ORTHO05D004866 7.4e-59 230.7 187 63.6
Carub.0005s1392 Capsella rubella HOM05D003823 ORTHO05D004866 1.3e-58 229.9 181 66.9
Haze_07352 Corylus avellana HOM05D003823 ORTHO05D004866 2.8e-58 228.8 253 52.6
CSS0031561 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.8e-57 226.1 189 66.7
Pp3c7_13070 Physcomitrium patens HOM05D003823 ORTHO05D004866 9.9e-56 220.3 182 64.8
SGA_v2.0_scaffold193G40709 Striga asiatica HOM05D003823 ORTHO05D004866 2.2e-55 219.2 191 61.3
Atru.chr9.2289 Acer truncatum HOM05D003823 ORTHO05D004866 1.9e-54 216.1 111 92.8
CSS0004961 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 4.6e-53 211.5 162 71.0
CSS0019545 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 5.1e-52 208.0 188 62.2
GSVIVG01008037001 Vitis vinifera HOM05D003823 ORTHO05D004866 8.1e-50 200.7 162 66.0
QL93p0043_0002 Quercus lobata HOM05D003823 ORTHO05D004866 4.5e-48 194.9 135 74.8
SEGI_34945 Sequoiadendron giganteum HOM05D003823 ORTHO05D004866 1.0e-47 193.7 134 74.6
MBI05_g00394_MAGBIO Magnolia biondii HOM05D000046 ORTHO05D000195 2.9e-47 192.2 133 72.9
TAR729G0007 Trochodendron aralioides HOM05D003823 ORTHO05D004866 6.5e-47 191.0 105 88.6
Nitab4.5_0012727g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 2.5e-46 189.1 133 74.4
CDE09G0968 Ceratophyllum demersum HOM05D005655 ORTHO05D007386 2.7e-45 185.7 152 64.5
Eucgr.G00114 Eucalyptus grandis HOM05D003823 ORTHO05D004866 9.0e-41 170.6 135 66.7
Eucgr.G00164 Eucalyptus grandis HOM05D003823 ORTHO05D004866 2.9e-39 165.6 126 68.3
Cre12.g499900 Chlamydomonas reinhardtii HOM05D003823 ORTHO05D004866 8.5e-39 164.1 186 47.3
Lj4g0026130 Lotus japonicus HOM05D003823 ORTHO05D004866 5.7e-35 151.4 101 75.2
Actinidia17538 Actinidia chinensis HOM05D003823 ORTHO05D004866 7.4e-35 151.0 130 63.1
Thecc.02G319100 Theobroma cacao HOM05D003823 ORTHO05D004866 4.8e-34 148.3 107 70.1
MCO13G641 Micromonas commoda HOM05D003823 ORTHO05D004866 6.3e-34 147.9 188 41.5
Sabra15G0049800 Salix brachista HOM05D003823 ORTHO05D000412 1.9e-30 136.3 70 94.3
Manes.01G188500 Manihot esculenta HOM05D003823 ORTHO05D004866 4.2e-30 135.2 128 55.5
CSS0038842 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 7.0e-17 91.3 61 77.0
CSS0033378 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.6e-16 90.1 46 93.5
Gorai.007G237600 Gossypium raimondii HOM05D003823 ORTHO05D004866 2.0e-16 89.7 46 89.1
Sabra15G0057900 Salix brachista HOM05D003823 ORTHO05D349330 1.0e-15 87.4 46 93.5
Gohir.D06G139701 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.7e-15 86.7 46 84.8
Gorai.005G095900 Gossypium raimondii HOM05D003823 ORTHO05D218813 2.2e-15 86.3 44 88.6
Gorai.003G098000 Gossypium raimondii HOM05D003823 ORTHO05D017994 2.9e-15 85.9 46 84.8
Gohir.D02G085100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 3.8e-15 85.5 46 87.0
Gorai.005G191600 Gossypium raimondii HOM05D003823 ORTHO05D004866 6.5e-15 84.7 46 82.6
Gohir.A05G198301 Gossypium hirsutum HOM05D003823 ORTHO05D004866 8.5e-15 84.3 46 82.6
Gohir.A08G078101 Gossypium hirsutum HOM05D003823 ORTHO05D004866 8.5e-15 84.3 46 82.6
Gohir.D03G122233 Gossypium hirsutum HOM05D003823 ORTHO05D004866 8.5e-15 84.3 46 82.6
Gorai.013G138400 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.5e-14 83.6 46 82.6
Gohir.D06G082500 Gossypium hirsutum HOM05D003823 ORTHO05D017994 2.5e-14 82.8 46 82.6
Gorai.008G100600 Gossypium raimondii HOM05D003823 ORTHO05D004866 4.2e-14 82.0 46 82.6
Duzib248G1489 Durio zibethinus HOM05D003823 ORTHO05D186086 1.2e-13 80.5 45 84.4


User provided reference genes

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