Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A501G12 Lonicera japonica HOM05D003823 ORTHO05D004866 1.6e-64 249.2 121 100.0
Lj4A511G17 Lonicera japonica HOM05D003823 ORTHO05D004866 1.8e-63 245.7 120 98.3
Lsat_1_v5_gn_2_88881 Lactuca sativa HOM05D003823 ORTHO05D004866 7.2e-57 223.8 166 71.1
ECA238G0538 Erigeron canadensis HOM05D003823 ORTHO05D004866 1.6e-56 222.6 166 69.9
HanXRQChr02g0056361 Helianthus annuus HOM05D003823 ORTHO05D004866 1.6e-56 222.6 166 70.5
HanXRQChr14g0449901 Helianthus annuus HOM05D003823 ORTHO05D004866 1.6e-56 222.6 166 70.5
Actinidia02709 Actinidia chinensis HOM05D003823 ORTHO05D004866 8.0e-56 220.3 166 69.9
CSS0031728 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 8.0e-56 220.3 166 69.9
CSS0041610 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 8.0e-56 220.3 166 69.9
CSS0049183 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 8.0e-56 220.3 166 69.9
vmacro18202 Vaccinium macrocarpon HOM05D003823 ORTHO05D004866 8.0e-56 220.3 166 69.9
Zm00001eb203950 Zea mays HOM05D003823 ORTHO05D004866 8.0e-56 220.3 166 69.3
Cc07_g03190 Coffea canephora HOM05D003823 ORTHO05D004866 1.0e-55 219.9 166 69.3
Dinv06526 Davidia involucrata HOM05D003823 ORTHO05D004866 1.4e-55 219.5 166 69.3
Nn8g40950 Nelumbo nucifera HOM05D003823 ORTHO05D004866 1.4e-55 219.5 167 68.3
Cc04_g17180 Coffea canephora HOM05D003823 ORTHO05D004866 1.8e-55 219.2 166 68.7
TWI60G1055 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 1.8e-55 219.2 166 68.7
TWI81G0804 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 1.8e-55 219.2 166 68.7
MBI02_g36598_MAGBIO Magnolia biondii HOM05D003823 ORTHO05D004866 3.0e-55 218.4 166 68.1
Hund02662 Selenicereus undatus HOM05D003823 ORTHO05D004866 3.0e-55 218.4 166 68.7
AUR62027457 Chenopodium quinoa HOM05D003823 ORTHO05D004866 4.0e-55 218.0 166 68.1
AUR62031242 Chenopodium quinoa HOM05D003823 ORTHO05D004866 4.0e-55 218.0 166 68.1
GSVIVG01020043001 Vitis vinifera HOM05D003823 ORTHO05D004866 4.0e-55 218.0 166 68.1
Glyma.02G268600 Glycine max HOM05D003823 ORTHO05D004866 5.2e-55 217.6 166 68.1
Glyma.14G048800 Glycine max HOM05D003823 ORTHO05D004866 5.2e-55 217.6 166 68.1
TAR374G1522 Trochodendron aralioides HOM05D003823 ORTHO05D004866 5.2e-55 217.6 166 68.1
CANSAT80G0583 Cannabis sativa HOM05D003823 ORTHO05D004866 6.7e-55 217.2 166 67.5
CiPaw.11G041500 Carya illinoinensis HOM05D003823 ORTHO05D004866 6.7e-55 217.2 166 67.5
Duzib251G0021 Durio zibethinus HOM05D003823 ORTHO05D004866 6.7e-55 217.2 166 68.1
Duzib268G0082 Durio zibethinus HOM05D003823 ORTHO05D004866 6.7e-55 217.2 166 68.1
Nn4g23085 Nelumbo nucifera HOM05D003823 ORTHO05D004866 6.7e-55 217.2 167 67.7
SalBow6G5762 Salvia bowleyana HOM05D003823 ORTHO05D004866 6.7e-55 217.2 166 67.5
VMungo0647G1166 Vigna mungo HOM05D003823 ORTHO05D004866 6.7e-55 217.2 166 67.5
Atru.chr9.2289 Acer truncatum HOM05D003823 ORTHO05D004866 8.8e-55 216.9 111 92.8
MSTRG.9636 Avicennia marina HOM05D003823 ORTHO05D004866 8.8e-55 216.9 166 68.1
Os02g0265400 Oryza sativa ssp. japonica HOM05D003823 ORTHO05D004866 8.8e-55 216.9 166 68.1
PSO017G2864 Papaver somniferum HOM05D003823 ORTHO05D004866 8.8e-55 216.9 166 68.1
Phvul.008G213700 Phaseolus vulgaris HOM05D003823 ORTHO05D004866 8.8e-55 216.9 166 66.9
Thecc.02G351700 Theobroma cacao HOM05D003823 ORTHO05D004866 8.8e-55 216.9 166 67.5
Ca_16285_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 1.2e-54 216.5 166 66.9
Cpa.g.sc388.5 Carica papaya HOM05D003823 ORTHO05D004866 1.5e-54 216.1 166 66.9
FvH4_5g15250 Fragaria vesca HOM05D003823 ORTHO05D004866 1.5e-54 216.1 166 67.5
FAN04G0558 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.5e-54 216.1 166 67.5
FAN08G0194 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.5e-54 216.1 166 67.5
FAN13G2005 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.5e-54 216.1 166 67.5
FAN18G4237 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.5e-54 216.1 166 67.5
Gohir.A12G166100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.5e-54 216.1 166 67.5
Gohir.D12G169500 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.5e-54 216.1 166 67.5
MD06G1190100 Malus domestica HOM05D003823 ORTHO05D004866 1.5e-54 216.1 166 67.5
MD14G1197000 Malus domestica HOM05D003823 ORTHO05D004866 1.5e-54 216.1 166 67.5
Peaxi162Scf00009g00217 Petunia axillaris HOM05D003823 ORTHO05D004866 1.5e-54 216.1 166 68.1
RcHm_v2.0_Chr7g0180841 Rosa chinensis HOM05D003823 ORTHO05D004866 1.5e-54 216.1 166 67.5
CDE02G3183 Ceratophyllum demersum HOM05D003823 ORTHO05D004866 2.0e-54 215.7 166 66.3
Migut.D02333 Erythranthe guttata HOM05D003823 ORTHO05D004866 2.0e-54 215.7 166 66.9
PGR083G1126 Punica granatum HOM05D003823 ORTHO05D004866 2.0e-54 215.7 166 67.5
Rhsim08G0068000 Rhododendron simsii HOM05D003823 ORTHO05D004866 2.0e-54 215.7 178 65.2
PSO478G3470 Papaver somniferum HOM05D003823 ORTHO05D004866 2.6e-54 215.3 166 67.5
EL10Ac8g19266 Beta vulgaris HOM05D003823 ORTHO05D004866 3.3e-54 214.9 166 67.5
Cfa018968 Carpinus fangiana HOM05D000046 ORTHO05D004866 3.3e-54 214.9 166 66.9
ClCG06G016300 Citrullus lanatus HOM05D003823 ORTHO05D004866 3.3e-54 214.9 166 66.9
MELO3C017163.2 Cucumis melo HOM05D003823 ORTHO05D004866 3.3e-54 214.9 166 66.9
CsaV3_1G002230 Cucumis sativus L. HOM05D003823 ORTHO05D004866 3.3e-54 214.9 166 66.9
Psat5g111480 Pisum sativum HOM05D003823 ORTHO05D004866 3.3e-54 214.9 166 66.9
Gorai.008G182100 Gossypium raimondii HOM05D003823 ORTHO05D004866 4.4e-54 214.5 166 66.9
Medtr3g080480 Medicago truncatula HOM05D003823 ORTHO05D004866 4.4e-54 214.5 166 67.5
Prupe.5G189200 Prunus persica HOM05D003823 ORTHO05D004866 4.4e-54 214.5 166 66.9
QL10p016165 Quercus lobata HOM05D003823 ORTHO05D004866 4.4e-54 214.5 166 66.3
Sc12g0006240 Simmondsia chinensis HOM05D003823 ORTHO05D004866 4.4e-54 214.5 166 67.5
TPR.G29042 Trifolium pratense HOM05D003823 ORTHO05D004866 4.4e-54 214.5 166 66.9
TAR622G1107 Trochodendron aralioides HOM05D003823 ORTHO05D004866 4.4e-54 214.5 166 67.5
Gohir.D11G033300 Gossypium hirsutum HOM05D003823 ORTHO05D004866 5.7e-54 214.2 166 67.5
Gorai.007G036100 Gossypium raimondii HOM05D003823 ORTHO05D004866 5.7e-54 214.2 166 67.5
Actinidia37644 Actinidia chinensis HOM05D003823 ORTHO05D004866 7.5e-54 213.8 166 67.5
ATR0564G299 Amborella trichopoda HOM05D003823 ORTHO05D004866 7.5e-54 213.8 166 67.5
CAN.G1305.7 Capsicum annuum HOM05D003823 ORTHO05D004866 7.5e-54 213.8 166 67.5
Nitab4.5_0000785g0070 Nicotiana tabacum HOM05D003823 ORTHO05D004866 7.5e-54 213.8 166 67.5
Nitab4.5_0010010g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 7.5e-54 213.8 166 67.5
Solyc03g113020.3 Solanum lycopersicum HOM05D003823 ORTHO05D004866 7.5e-54 213.8 166 67.5
Sopen03g032100 Solanum pennellii HOM05D003823 ORTHO05D004866 7.5e-54 213.8 166 67.5
TPR.G25673 Trifolium pratense HOM05D003823 ORTHO05D004866 7.5e-54 213.8 166 66.3
Zm00001eb237810 Zea mays HOM05D003823 ORTHO05D004866 7.5e-54 213.8 166 66.9
COL.COLO4_22965 Corchorus olitorius HOM05D003823 ORTHO05D004866 9.7e-54 213.4 166 66.9
Lalb_Chr25g0280071 Lupinus albus HOM05D003823 ORTHO05D004866 9.7e-54 213.4 166 66.9
PGSC0003DMG400018144 Solanum tuberosum HOM05D003823 ORTHO05D004866 9.7e-54 213.4 166 66.9
HPP92_020326 Vanilla planifolia HOM05D003823 ORTHO05D004866 9.7e-54 213.4 174 64.4
Aqoxy3G03322 Aquilegia oxysepala HOM05D003823 ORTHO05D004866 1.3e-53 213.0 166 67.5
Potri.001G354000 Populus trichocarpa HOM05D003823 ORTHO05D004866 1.3e-53 213.0 166 67.5
Sabra16G0232900 Salix brachista HOM05D003823 ORTHO05D004866 1.3e-53 213.0 166 67.5
Ciclev10022411m.g Citrus clementina HOM05D003823 ORTHO05D004866 1.7e-53 212.6 166 66.3
Gohir.A11G029891 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.7e-53 212.6 166 66.9
Manes.05G098825 Manihot esculenta HOM05D003823 ORTHO05D004866 1.7e-53 212.6 166 66.9
Oeu022626.1 Olea europaea HOM05D003823 ORTHO05D004866 1.7e-53 212.6 166 66.3
Thecc.03G082400 Theobroma cacao HOM05D003823 ORTHO05D004866 1.7e-53 212.6 166 66.9
Duzib084G0821 Durio zibethinus HOM05D003823 ORTHO05D004866 2.2e-53 212.2 166 66.3
Migut.D02334 Erythranthe guttata HOM05D003823 ORTHO05D004866 2.2e-53 212.2 166 66.3
Manes.14G076100 Manihot esculenta HOM05D003823 ORTHO05D004866 2.2e-53 212.2 166 66.9
Psat2g025840 Pisum sativum HOM05D003823 ORTHO05D004866 2.2e-53 212.2 166 65.7
Atru.chr11.1839 Acer truncatum HOM05D003823 ORTHO05D004866 2.8e-53 211.8 166 66.9
Ca_06062_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 2.8e-53 211.8 166 66.3
Ca_30714_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 2.8e-53 211.8 166 66.3
Dinv38684 Davidia involucrata HOM05D003823 ORTHO05D004866 2.8e-53 211.8 166 66.3
Sed0017565 Sechium edule HOM05D003823 ORTHO05D004866 3.7e-53 211.5 166 66.3
THA.LOC104819434 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 3.7e-53 211.5 166 66.3
Lj4g0027914 Lotus japonicus HOM05D003823 ORTHO05D004866 4.8e-53 211.1 166 65.7
Medtr5g085380 Medicago truncatula HOM05D003823 ORTHO05D004866 4.8e-53 211.1 166 65.1
Potri.011G077900 Populus trichocarpa HOM05D003823 ORTHO05D004866 4.8e-53 211.1 166 66.3
Oeu006179.1 Olea europaea HOM05D003823 ORTHO05D004866 8.2e-53 210.3 166 65.1
Atru.chr4.927 Acer truncatum HOM05D003823 ORTHO05D004866 1.1e-52 209.9 166 66.9
Eucgr.K02462 Eucalyptus grandis HOM05D003823 ORTHO05D004866 1.1e-52 209.9 186 60.8
THA.LOC104821437 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 1.4e-52 209.5 166 65.7
Rhsim08G0157700 Rhododendron simsii HOM05D003823 ORTHO05D004866 1.8e-52 209.1 166 65.7
Ciclev10032832m.g Citrus clementina HOM05D003823 ORTHO05D004866 2.4e-52 208.8 166 66.3
Dinv19933 Davidia involucrata HOM05D003823 ORTHO05D004866 2.4e-52 208.8 166 65.7
Mapoly0081s0078 Marchantia polymorpha HOM05D003823 ORTHO05D004866 3.1e-52 208.4 166 65.1
BcaB01g00874 Brassica carinata HOM05D003823 ORTHO05D004866 7.0e-52 207.2 166 65.1
BcaC01g01774 Brassica carinata HOM05D003823 ORTHO05D004866 7.0e-52 207.2 166 65.1
BcaC01g02292 Brassica carinata HOM05D003823 ORTHO05D004866 7.0e-52 207.2 166 65.1
A06p19840 Brassica napus HOM05D003823 ORTHO05D004866 7.0e-52 207.2 166 65.1
A06p27290 Brassica napus HOM05D003823 ORTHO05D004866 7.0e-52 207.2 166 65.1
C03p66970 Brassica napus HOM05D003823 ORTHO05D004866 7.0e-52 207.2 166 65.1
C03p72020 Brassica napus HOM05D003823 ORTHO05D004866 7.0e-52 207.2 166 65.1
BolC3t18970H Brassica oleracea HOM05D003823 ORTHO05D004866 7.0e-52 207.2 166 65.1
BolC3t19499H Brassica oleracea HOM05D003823 ORTHO05D004866 7.0e-52 207.2 166 65.1
BraA06t25064Z Brassica rapa HOM05D003823 ORTHO05D004866 7.0e-52 207.2 166 65.1
BraA06t25670Z Brassica rapa HOM05D003823 ORTHO05D004866 7.0e-52 207.2 166 65.1
Pp3c11_12990 Physcomitrium patens HOM05D003823 ORTHO05D004866 7.0e-52 207.2 166 65.1
Sp5g14150 Schrenkiella parvula HOM05D003823 ORTHO05D004866 7.0e-52 207.2 166 65.1
CARHR156490 Cardamine hirsuta HOM05D003823 ORTHO05D004866 9.1e-52 206.8 166 65.1
DCAR_026066 Daucus carota HOM05D003823 ORTHO05D004866 1.2e-51 206.5 166 66.3
Thhalv10010746m.g Eutrema salsugineum HOM05D003823 ORTHO05D004866 2.0e-51 205.7 166 64.5
SGA_v2.0_scaffold193G40709 Striga asiatica HOM05D003823 ORTHO05D004866 2.0e-51 205.7 179 60.9
Sed0002791 Sechium edule HOM05D003823 ORTHO05D004866 4.5e-51 204.5 166 64.5
SMO116G0153 Selaginella moellendorffii HOM05D003823 ORTHO05D004866 4.5e-51 204.5 166 63.3
Lj5A113G71 Lonicera japonica HOM05D003823 ORTHO05D004866 1.0e-50 203.4 166 64.5
Aa31LG4G16460 Aethionema arabicum HOM05D003823 ORTHO05D004866 1.7e-50 202.6 166 62.7
BcaB02g10689 Brassica carinata HOM05D003823 ORTHO05D004866 2.9e-50 201.8 166 63.9
AL5G27100 Arabidopsis lyrata HOM05D003823 ORTHO05D004866 3.8e-50 201.4 166 63.3
AT3G47810 Arabidopsis thaliana HOM05D003823 ORTHO05D004866 3.8e-50 201.4 166 63.3
Carub.0005s1392 Capsella rubella HOM05D003823 ORTHO05D004866 3.8e-50 201.4 166 63.3
CBR_g29439 Chara braunii HOM05D003823 ORTHO05D004866 4.2e-49 198.0 166 60.8
CSS0031561 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.0e-47 193.4 167 64.1
Haze_07352 Corylus avellana HOM05D003823 ORTHO05D004866 1.5e-46 189.5 232 47.8
Pp3c7_13070 Physcomitrium patens HOM05D003823 ORTHO05D004866 3.4e-46 188.3 166 60.8
CSS0004961 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 2.2e-42 175.6 143 66.4
CDE09G0968 Ceratophyllum demersum HOM05D005655 ORTHO05D007386 3.6e-40 168.3 141 62.4
CSS0019545 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 8.0e-40 167.2 166 56.6
GSVIVG01008037001 Vitis vinifera HOM05D003823 ORTHO05D004866 4.0e-39 164.9 141 61.7
SEGI_34945 Sequoiadendron giganteum HOM05D003823 ORTHO05D004866 3.7e-37 158.3 114 70.2
MBI05_g00394_MAGBIO Magnolia biondii HOM05D000046 ORTHO05D000195 1.1e-36 156.8 114 68.4
QL93p0043_0002 Quercus lobata HOM05D003823 ORTHO05D004866 2.4e-36 155.6 114 69.3
TAR729G0007 Trochodendron aralioides HOM05D003823 ORTHO05D004866 1.2e-35 153.3 86 83.7
Nitab4.5_0012727g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 1.6e-35 152.9 114 69.3
Actinidia17538 Actinidia chinensis HOM05D003823 ORTHO05D004866 5.9e-35 151.0 130 63.1
Eucgr.G00164 Eucalyptus grandis HOM05D003823 ORTHO05D004866 3.3e-33 145.2 114 64.0
Cre12.g499900 Chlamydomonas reinhardtii HOM05D003823 ORTHO05D004866 8.0e-32 140.6 170 45.3
Eucgr.G00114 Eucalyptus grandis HOM05D003823 ORTHO05D004866 5.2e-31 137.9 114 62.3
Manes.01G188500 Manihot esculenta HOM05D003823 ORTHO05D004866 2.6e-30 135.6 128 55.5
MCO13G641 Micromonas commoda HOM05D003823 ORTHO05D004866 2.2e-29 132.5 172 40.1
Thecc.02G319100 Theobroma cacao HOM05D003823 ORTHO05D004866 2.2e-29 132.5 87 71.3
Sabra15G0049800 Salix brachista HOM05D003823 ORTHO05D000412 4.6e-27 124.8 65 90.8
Lj4g0026130 Lotus japonicus HOM05D003823 ORTHO05D004866 6.2e-24 114.4 81 69.1
CSS0033378 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.2e-16 90.1 46 93.5
Gorai.007G237600 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.6e-16 89.7 46 89.1
Gohir.D06G139701 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.4e-15 86.7 46 84.8
Gorai.005G095900 Gossypium raimondii HOM05D003823 ORTHO05D218813 1.8e-15 86.3 44 88.6
Gorai.003G098000 Gossypium raimondii HOM05D003823 ORTHO05D017994 2.3e-15 85.9 46 84.8
Gohir.D02G085100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 3.1e-15 85.5 46 87.0
Gorai.005G191600 Gossypium raimondii HOM05D003823 ORTHO05D004866 5.2e-15 84.7 46 82.6
Gohir.A05G198301 Gossypium hirsutum HOM05D003823 ORTHO05D004866 6.8e-15 84.3 46 82.6
Gohir.A08G078101 Gossypium hirsutum HOM05D003823 ORTHO05D004866 6.8e-15 84.3 46 82.6
Gohir.D03G122233 Gossypium hirsutum HOM05D003823 ORTHO05D004866 6.8e-15 84.3 46 82.6
Gorai.013G138400 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.2e-14 83.6 46 82.6
Gohir.D06G082500 Gossypium hirsutum HOM05D003823 ORTHO05D017994 2.0e-14 82.8 46 82.6
CSS0038842 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 2.6e-14 82.4 57 71.9
Gorai.008G100600 Gossypium raimondii HOM05D003823 ORTHO05D004866 3.4e-14 82.0 46 82.6
Duzib248G1489 Durio zibethinus HOM05D003823 ORTHO05D186086 9.8e-14 80.5 45 84.4


User provided reference genes

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