Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A470T16 Lonicera japonica HOM05D003455 ORTHO05D004165 1.6e-45 185.7 90 100.0
Lj1A454T5 Lonicera japonica HOM05D003455 ORTHO05D004165 1.2e-43 179.5 89 96.6
Lj1A457T7 Lonicera japonica HOM05D003455 ORTHO05D004165 1.4e-41 172.6 89 92.1
Lju967A0G13 Lonicera japonica HOM05D003455 ORTHO05D235758 5.6e-22 107.5 89 67.4
Lj4A121T77 Lonicera japonica HOM05D003455 ORTHO05D004165 1.1e-12 76.6 75 53.3
Oeu007070.2 Olea europaea HOM05D003455 ORTHO05D004165 1.5e-11 72.8 80 51.2
CSS0027598 Camellia sinensis var. sinensis HOM05D003455 ORTHO05D004165 2.6e-11 72.0 75 50.7
Dinv33837 Davidia involucrata HOM05D003455 ORTHO05D004165 5.8e-11 70.9 75 49.3
MSTRG.15442 Avicennia marina HOM05D003455 ORTHO05D004165 7.6e-11 70.5 75 50.7
Cfa007317 Carpinus fangiana HOM05D003455 ORTHO05D004165 9.9e-11 70.1 80 46.2
Hma1.2p1_0069F.1_g037360 Hydrangea macrophylla HOM05D003455 ORTHO05D004165 9.9e-11 70.1 94 40.4
CSS0034610 Camellia sinensis var. sinensis HOM05D003455 ORTHO05D004165 1.3e-10 69.7 75 49.3
TAR371G0709 Trochodendron aralioides HOM05D003455 ORTHO05D004165 2.2e-10 68.9 75 48.0
PGR004G0056 Punica granatum HOM05D003455 ORTHO05D004165 2.9e-10 68.6 90 44.4
THA.LOC104822323 Tarenaya hassleriana HOM05D003455 ORTHO05D004165 2.9e-10 68.6 75 49.3
CSS0040085 Camellia sinensis var. sinensis HOM05D003455 ORTHO05D004165 3.8e-10 68.2 75 46.7
CAN.G497.93 Capsicum annuum HOM05D003455 ORTHO05D004165 3.8e-10 68.2 88 43.2
Peaxi162Scf00166g00342 Petunia axillaris HOM05D003455 ORTHO05D004165 3.8e-10 68.2 75 48.0
CANSAT64G0930 Cannabis sativa HOM05D003455 ORTHO05D004165 4.9e-10 67.8 76 48.7
CsaV3_5G038560 Cucumis sativus L. HOM05D003455 ORTHO05D004165 6.4e-10 67.4 75 46.7
Sp6g28490 Schrenkiella parvula HOM05D003455 ORTHO05D004165 6.4e-10 67.4 95 42.1
GSVIVG01032900001 Vitis vinifera HOM05D003455 ORTHO05D004165 6.4e-10 67.4 75 46.7
Hma1.2p1_1555F.1_g290410 Hydrangea macrophylla HOM05D003455 ORTHO05D004165 8.4e-10 67.0 75 46.7
Lj2g0003959 Lotus japonicus HOM05D003455 ORTHO05D004165 8.4e-10 67.0 89 43.8
SalBow1G0092 Salvia bowleyana HOM05D003455 ORTHO05D004165 8.4e-10 67.0 75 45.3
VMungo0720G0561 Vigna mungo HOM05D003455 ORTHO05D004165 8.4e-10 67.0 80 48.8
Actinidia17593 Actinidia chinensis HOM05D003455 ORTHO05D004165 1.1e-09 66.6 75 48.0
Carub.0006s1377 Capsella rubella HOM05D003455 ORTHO05D004165 1.1e-09 66.6 95 41.1
CiPaw.03G087400 Carya illinoinensis HOM05D003455 ORTHO05D004165 1.1e-09 66.6 74 47.3
Glyma.13G055200 Glycine max HOM05D003455 ORTHO05D004165 1.1e-09 66.6 80 47.5
Nitab4.5_0009044g0070 Nicotiana tabacum HOM05D003455 ORTHO05D004165 1.1e-09 66.6 75 48.0
Solyc02g089070.3 Solanum lycopersicum HOM05D003455 ORTHO05D004165 1.1e-09 66.6 88 42.0
Sopen02g033830 Solanum pennellii HOM05D003455 ORTHO05D004165 1.1e-09 66.6 75 48.0
PGSC0003DMG400001365 Solanum tuberosum HOM05D003455 ORTHO05D004165 1.1e-09 66.6 88 42.0
BcaC01g04475 Brassica carinata HOM05D003455 ORTHO05D004165 1.4e-09 66.2 95 38.9
DCAR_011034 Daucus carota HOM05D003455 ORTHO05D004165 1.4e-09 66.2 75 48.0
Duzib264G0955 Durio zibethinus HOM05D003455 ORTHO05D004165 1.4e-09 66.2 75 46.7
ECA238G0586 Erigeron canadensis HOM05D003455 ORTHO05D004165 1.4e-09 66.2 92 44.6
Prupe.3G252000 Prunus persica HOM05D003455 ORTHO05D004165 1.4e-09 66.2 80 47.5
QL02p067326 Quercus lobata HOM05D003455 ORTHO05D004165 1.4e-09 66.2 80 45.0
QL93p0053_1015 Quercus lobata HOM05D003455 ORTHO05D004165 1.4e-09 66.2 80 45.0
C09p75580 Brassica napus HOM05D003455 ORTHO05D004165 1.9e-09 65.9 95 38.9
CARHR197710 Cardamine hirsuta HOM05D003455 ORTHO05D004165 1.9e-09 65.9 95 42.1
Thhalv10020815m.g Eutrema salsugineum HOM05D003455 ORTHO05D004165 1.9e-09 65.9 95 38.9
Lalb_Chr06g0174911 Lupinus albus HOM05D003455 ORTHO05D004165 1.9e-09 65.9 94 42.6
Peaxi162Scf00043g00181 Petunia axillaris HOM05D003455 ORTHO05D004165 1.9e-09 65.9 75 46.7
Medtr6g015395 Medicago truncatula HOM05D003455 ORTHO05D004165 2.4e-09 65.5 80 45.0
Nn3g17485 Nelumbo nucifera HOM05D003455 ORTHO05D004165 2.4e-09 65.5 75 44.0
Oeu004418.1 Olea europaea HOM05D003455 ORTHO05D004165 2.4e-09 65.5 80 47.5
Psat1g068920 Pisum sativum HOM05D003455 ORTHO05D004165 2.4e-09 65.5 80 45.0
AL6G26470 Arabidopsis lyrata HOM05D003455 ORTHO05D004165 3.2e-09 65.1 95 42.1
AT5G15610 Arabidopsis thaliana HOM05D003455 ORTHO05D004165 3.2e-09 65.1 95 41.1
Nitab4.5_0005596g0050 Nicotiana tabacum HOM05D003455 ORTHO05D004165 3.2e-09 65.1 75 46.7
Peaxi162Scf00563g00315 Petunia axillaris HOM05D003455 ORTHO05D004165 3.2e-09 65.1 75 46.7
Phvul.007G207400 Phaseolus vulgaris HOM05D003455 ORTHO05D004165 3.2e-09 65.1 89 43.8
Duzib147G0154 Durio zibethinus HOM05D003455 ORTHO05D004165 4.2e-09 64.7 75 44.0
Sp3g01270 Schrenkiella parvula HOM05D003455 ORTHO05D004165 4.2e-09 64.7 95 37.9
BcaC01g04477 Brassica carinata HOM05D003455 ORTHO05D004165 5.4e-09 64.3 95 37.9
BcaC05g30332 Brassica carinata HOM05D003455 ORTHO05D004165 5.4e-09 64.3 95 38.9
CiPaw.04G054200 Carya illinoinensis HOM05D003455 ORTHO05D004165 5.4e-09 64.3 95 40.0
Atru.chr8.508 Acer truncatum HOM05D003455 ORTHO05D004165 7.1e-09 63.9 80 45.0
Cpa.g.sc14.196 Carica papaya HOM05D003455 ORTHO05D004165 7.1e-09 63.9 80 46.2
Migut.K01264 Erythranthe guttata HOM05D003455 ORTHO05D004165 7.1e-09 63.9 75 46.7
Eucgr.I02041 Eucalyptus grandis HOM05D003455 ORTHO05D004165 7.1e-09 63.9 82 43.9
Glyma.20G089400 Glycine max HOM05D003455 ORTHO05D004165 7.1e-09 63.9 80 45.0
Manes.01G094700 Manihot esculenta HOM05D003455 ORTHO05D004165 7.1e-09 63.9 75 44.0
Potri.004G116700 Populus trichocarpa HOM05D003455 ORTHO05D004165 7.1e-09 63.9 95 41.1
Ca_04310_v3 Cicer arietinum L. HOM05D003455 ORTHO05D004165 9.3e-09 63.5 80 45.0
MD09G1068800 Malus domestica HOM05D003455 ORTHO05D004165 9.3e-09 63.5 80 45.0
Sed0017731 Sechium edule HOM05D003455 ORTHO05D004165 9.3e-09 63.5 75 44.0
Nitab4.5_0003932g0020 Nicotiana tabacum HOM05D003455 ORTHO05D004165 1.2e-08 63.2 88 40.9
TWI34G1947 Tripterygium wilfordii HOM05D003455 ORTHO05D004165 1.2e-08 63.2 80 42.5
Thhalv10013660m.g Eutrema salsugineum HOM05D003455 ORTHO05D004165 1.6e-08 62.8 95 40.0
Gohir.D04G034300 Gossypium hirsutum HOM05D003455 ORTHO05D004165 1.6e-08 62.8 75 42.7
HanXRQChr17g0546121 Helianthus annuus HOM05D003455 ORTHO05D004165 1.6e-08 62.8 95 41.1
Sc26g0001300 Simmondsia chinensis HOM05D003455 ORTHO05D004165 1.6e-08 62.8 75 42.7
TPR.G4293 Trifolium pratense HOM05D003455 ORTHO05D004165 1.6e-08 62.8 80 43.8
Carub.0003s0132 Capsella rubella HOM05D003455 ORTHO05D004165 2.1e-08 62.4 95 35.8
CARHR076170 Cardamine hirsuta HOM05D003455 ORTHO05D004165 2.1e-08 62.4 95 36.8
Glyma.10G140700 Glycine max HOM05D003455 ORTHO05D004165 2.1e-08 62.4 80 43.8
Gohir.A09G008500 Gossypium hirsutum HOM05D003455 ORTHO05D004165 2.1e-08 62.4 74 44.6
Gorai.012G038600 Gossypium raimondii HOM05D003455 ORTHO05D004165 2.1e-08 62.4 82 42.7
Phvul.004G038200 Phaseolus vulgaris HOM05D003455 ORTHO05D004165 2.1e-08 62.4 80 43.8
SGA_v2.0_scaffold154G37123 Striga asiatica HOM05D003455 ORTHO05D004165 2.1e-08 62.4 75 46.7
MBI19_g21275_MAGBIO Magnolia biondii HOM05D003455 ORTHO05D004165 2.7e-08 62.0 75 44.0
Sabra17G0084500 Salix brachista HOM05D003455 ORTHO05D004165 2.7e-08 62.0 75 44.0
SabraUnG0001900 Salix brachista HOM05D003455 ORTHO05D004165 2.7e-08 62.0 75 44.0
Lsat_1_v5_gn_3_95981 Lactuca sativa HOM05D003455 ORTHO05D004165 3.5e-08 61.6 83 42.2
Lalb_Chr02g0158861 Lupinus albus HOM05D003455 ORTHO05D004165 3.5e-08 61.6 75 46.7
MD17G1061800 Malus domestica HOM05D003455 ORTHO05D004165 3.5e-08 61.6 93 38.7
Thecc.04G097900 Theobroma cacao HOM05D003455 ORTHO05D004165 3.5e-08 61.6 75 42.7
arahy.Tifrunner.gnm1.ann1.87INZE Arachis hypogaea HOM05D003455 ORTHO05D004165 4.6e-08 61.2 80 41.2
COL.COLO4_02772 Corchorus olitorius HOM05D003455 ORTHO05D004165 4.6e-08 61.2 75 41.3
Gohir.A05G381100 Gossypium hirsutum HOM05D003455 ORTHO05D004165 4.6e-08 61.2 75 42.7
Gohir.D09G007900 Gossypium hirsutum HOM05D003455 ORTHO05D004165 4.6e-08 61.2 75 42.7
Lalb_Chr21g0318331 Lupinus albus HOM05D003455 ORTHO05D004165 4.6e-08 61.2 94 40.4
Medtr7g091480 Medicago truncatula HOM05D003455 ORTHO05D004165 4.6e-08 61.2 80 43.8
ClCG11G004850 Citrullus lanatus HOM05D003455 ORTHO05D004165 6.0e-08 60.8 42 59.5
Gorai.006G009500 Gossypium raimondii HOM05D003455 ORTHO05D004165 6.0e-08 60.8 75 42.7
Lsat_1_v5_gn_2_89540 Lactuca sativa HOM05D003455 ORTHO05D004165 6.0e-08 60.8 75 45.3
HanXRQChr15g0472411 Helianthus annuus HOM05D003455 ORTHO05D004165 7.8e-08 60.5 95 40.0
TWI32G0721 Tripterygium wilfordii HOM05D003455 ORTHO05D004165 7.8e-08 60.5 94 37.2
A05p45080 Brassica napus HOM05D003455 ORTHO05D004165 1.0e-07 60.1 111 33.3
BraA05t23153Z Brassica rapa HOM05D003455 ORTHO05D004165 1.0e-07 60.1 111 33.3
Ciclev10011854m.g Citrus clementina HOM05D003455 ORTHO05D004165 1.0e-07 60.1 76 47.4
Manes.02G056600 Manihot esculenta HOM05D003455 ORTHO05D004165 1.0e-07 60.1 75 44.0
Hund17038 Selenicereus undatus HOM05D003455 ORTHO05D004165 1.0e-07 60.1 77 41.6
Aa31LG11G13970 Aethionema arabicum HOM05D003455 ORTHO05D004165 1.7e-07 59.3 95 40.0
BolC5t35100H Brassica oleracea HOM05D003455 ORTHO05D004165 1.7e-07 59.3 92 39.1
Potri.017G095300 Populus trichocarpa HOM05D003455 ORTHO05D004165 1.7e-07 59.3 75 42.7
Cc07_g04370 Coffea canephora HOM05D003455 ORTHO05D004165 3.9e-07 58.2 95 38.9
A03p32840 Brassica napus HOM05D003455 ORTHO05D004165 5.1e-07 57.8 96 36.5
C03p39970 Brassica napus HOM05D003455 ORTHO05D004165 5.1e-07 57.8 96 36.5
BolC3t16262H Brassica oleracea HOM05D003455 ORTHO05D004165 5.1e-07 57.8 96 36.5
BraA03t12453Z Brassica rapa HOM05D003455 ORTHO05D004165 5.1e-07 57.8 96 36.5
PSO017G2371 Papaver somniferum HOM05D003455 ORTHO05D004165 5.1e-07 57.8 76 39.5
PSO478G0569 Papaver somniferum HOM05D003455 ORTHO05D004165 5.1e-07 57.8 76 39.5
ECA246G2096 Erigeron canadensis HOM05D003455 ORTHO05D004165 8.7e-07 57.0 47 48.9
AL3G11450 Arabidopsis lyrata HOM05D003455 ORTHO05D004165 1.1e-06 56.6 95 32.6
Aqoxy3G03656 Aquilegia oxysepala HOM05D003455 ORTHO05D004165 1.5e-06 56.2 77 41.6
MSTRG.3364 Avicennia marina HOM05D003455 ORTHO05D004165 1.5e-06 56.2 75 45.3
Peaxi162Scf00991g00014 Petunia axillaris HOM05D003455 ORTHO05D004165 1.5e-06 56.2 52 50.0
unitig_748.g8420 Utricularia gibba HOM05D003455 ORTHO05D004165 1.5e-06 56.2 98 36.7
RcHm_v2.0_Chr2g0165551 Rosa chinensis HOM05D003455 ORTHO05D004165 3.3e-06 55.1 80 38.8
Zm00001eb337010 Zea mays HOM05D003455 ORTHO05D004165 3.3e-06 55.1 82 35.4
FvH4_6g46660 Fragaria vesca HOM05D003455 ORTHO05D004165 4.3e-06 54.7 80 38.8
FAN02G3143 Fragaria x ananassa HOM05D003455 ORTHO05D004165 4.3e-06 54.7 80 38.8
FAN05G4304 Fragaria x ananassa HOM05D003455 ORTHO05D004165 4.3e-06 54.7 80 38.8
FAN09G2387 Fragaria x ananassa HOM05D003455 ORTHO05D004165 4.3e-06 54.7 80 38.8
FAN14G2996 Fragaria x ananassa HOM05D003455 ORTHO05D004165 4.3e-06 54.7 80 38.8
AUR62013681 Chenopodium quinoa HOM05D003455 ORTHO05D004165 5.6e-06 54.3 76 39.5
EL10Ac1g00859 Beta vulgaris HOM05D003455 ORTHO05D004165 9.6e-06 53.5 95 35.8
CDE09G0770 Ceratophyllum demersum HOM05D003455 ORTHO05D004165 9.6e-06 53.5 52 48.1
AUR62004181 Chenopodium quinoa HOM05D003455 ORTHO05D004165 9.6e-06 53.5 74 39.2


User provided reference genes

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