Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A33T83 Lonicera japonica HOM05D001587 ORTHO05D008791 8.4e-171 603.6 305 100.0
GSVIVG01009782001 Vitis vinifera HOM05D001587 ORTHO05D008791 1.1e-133 480.3 305 80.3
Duzib041G0293 Durio zibethinus HOM05D001587 ORTHO05D008791 8.5e-131 470.7 301 78.1
TWI56G0852 Tripterygium wilfordii HOM05D001587 ORTHO05D008791 8.5e-131 470.7 305 78.7
Atru.chr13.396 Acer truncatum HOM05D001587 ORTHO05D008791 1.2e-129 466.8 305 78.0
Thecc.08G034500 Theobroma cacao HOM05D001587 ORTHO05D008791 1.2e-129 466.8 301 78.7
MD15G1021600 Malus domestica HOM05D001587 ORTHO05D008791 1.6e-129 466.5 302 78.1
Cpa.g.sc99.13 Carica papaya HOM05D001587 ORTHO05D008791 8.0e-129 464.2 302 76.5
Ciclev10001571m.g Citrus clementina HOM05D001587 ORTHO05D008791 1.8e-128 463.0 304 77.6
Hma1.2p1_1194F.1_g265710 Hydrangea macrophylla HOM05D001587 ORTHO05D008791 2.3e-128 462.6 304 76.6
Cc10_g02390 Coffea canephora HOM05D001587 ORTHO05D008791 3.0e-128 462.2 301 76.4
Potri.005G232200 Populus trichocarpa HOM05D001587 ORTHO05D008791 6.8e-128 461.1 305 77.0
CAN.G851.40 Capsicum annuum HOM05D001587 ORTHO05D008791 1.2e-127 460.3 301 75.1
COL.COLO4_26234 Corchorus olitorius HOM05D001587 ORTHO05D008791 2.0e-127 459.5 301 77.4
Manes.05G154300 Manihot esculenta HOM05D001587 ORTHO05D008791 2.6e-127 459.1 305 78.4
QL02p010191 Quercus lobata HOM05D001587 ORTHO05D008791 2.6e-127 459.1 304 77.0
Gorai.010G007600 Gossypium raimondii HOM05D001587 ORTHO05D008791 4.4e-127 458.4 301 77.4
CSS0005575 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 5.7e-127 458.0 294 79.3
CANSAT35G0963 Cannabis sativa HOM05D001587 ORTHO05D008791 5.7e-127 458.0 302 76.2
Gohir.D06G002700 Gossypium hirsutum HOM05D001587 ORTHO05D008791 9.8e-127 457.2 301 77.4
CSS0021558 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 1.3e-126 456.8 294 78.9
Peaxi162Scf00189g00920 Petunia axillaris HOM05D001587 ORTHO05D008791 2.2e-126 456.1 302 74.5
Sabra05G0179100 Salix brachista HOM05D001587 ORTHO05D002654 2.2e-126 456.1 305 76.4
Nitab4.5_0001861g0110 Nicotiana tabacum HOM05D001587 ORTHO05D008791 3.7e-126 455.3 302 75.5
Sopen04g034390 Solanum pennellii HOM05D001587 ORTHO05D008791 4.8e-126 454.9 301 74.1
RcHm_v2.0_Chr6g0301771 Rosa chinensis HOM05D001587 ORTHO05D008791 8.3e-126 454.1 296 78.0
Nitab4.5_0005779g0030 Nicotiana tabacum HOM05D001587 ORTHO05D008791 1.8e-125 453.0 302 74.8
Prupe.1G373400 Prunus persica HOM05D001587 ORTHO05D008791 1.8e-125 453.0 297 77.4
PGSC0003DMG400003752 Solanum tuberosum HOM05D001587 ORTHO05D008791 5.4e-125 451.4 301 73.8
Eucgr.F01602 Eucalyptus grandis HOM05D001587 ORTHO05D008791 7.0e-125 451.1 301 75.4
Solyc04g080800.4 Solanum lycopersicum HOM05D001587 ORTHO05D008791 1.2e-124 450.3 301 73.4
FvH4_2g39240 Fragaria vesca HOM05D001587 ORTHO05D008791 2.0e-124 449.5 296 77.4
HanXRQChr04g0099151 Helianthus annuus HOM05D001587 ORTHO05D008791 2.7e-124 449.1 305 74.8
Lsat_1_v5_gn_1_17201 Lactuca sativa HOM05D001587 ORTHO05D008791 1.0e-123 447.2 294 77.9
Sc15g0007180 Simmondsia chinensis HOM05D001587 ORTHO05D008791 1.7e-123 446.4 302 73.5
Nn5g29720 Nelumbo nucifera HOM05D001587 ORTHO05D008791 2.9e-123 445.7 303 74.3
Lj1g0011689 Lotus japonicus HOM05D001587 ORTHO05D008791 3.8e-123 445.3 303 74.6
PSO541G2666 Papaver somniferum HOM05D001587 ORTHO05D008791 8.5e-123 444.1 302 74.8
PSO675G8960 Papaver somniferum HOM05D001587 ORTHO05D008791 8.5e-123 444.1 302 75.5
ECA247G3480 Erigeron canadensis HOM05D001587 ORTHO05D008791 3.2e-122 442.2 295 76.9
AUR62034528 Chenopodium quinoa HOM05D001587 ORTHO05D008791 9.5e-122 440.7 297 74.1
Hund17199 Selenicereus undatus HOM05D001587 ORTHO05D008791 2.1e-121 439.5 302 74.2
MSTRG.1247 Avicennia marina HOM05D001587 ORTHO05D008791 4.7e-121 438.3 295 74.9
Sed0025916 Sechium edule HOM05D001587 ORTHO05D008791 4.7e-121 438.3 297 74.4
Glyma.06G029000 Glycine max HOM05D001587 ORTHO05D008791 1.8e-120 436.4 303 72.9
Lalb_Chr08g0245991 Lupinus albus HOM05D001587 ORTHO05D008791 1.8e-120 436.4 303 73.3
EL10Ac1g00602 Beta vulgaris HOM05D001587 ORTHO05D008791 3.0e-120 435.6 297 72.4
MELO3C010971.2 Cucumis melo HOM05D001587 ORTHO05D008791 3.0e-120 435.6 297 74.4
CsaV3_2G029060 Cucumis sativus L. HOM05D001587 ORTHO05D008791 4.0e-120 435.3 302 73.2
Phvul.009G060300 Phaseolus vulgaris HOM05D001587 ORTHO05D008791 4.0e-120 435.3 303 72.3
THA.LOC104813319 Tarenaya hassleriana HOM05D001587 ORTHO05D008791 4.0e-120 435.3 301 74.1
TPR.G12317 Trifolium pratense HOM05D001587 ORTHO05D008791 6.8e-120 434.5 300 73.3
Migut.C00772 Erythranthe guttata HOM05D001587 ORTHO05D008791 2.6e-119 432.6 301 72.4
Ah.05g180890 Amaranthus hybridus HOM05D001587 ORTHO05D008791 4.4e-119 431.8 297 72.4
FAN27G1828 Fragaria x ananassa HOM05D001587 ORTHO05D008791 5.7e-119 431.4 316 71.5
MBI11_g07616_MAGBIO Magnolia biondii HOM05D001587 ORTHO05D008791 2.2e-118 429.5 301 70.8
Aqoxy6G01203 Aquilegia oxysepala HOM05D001587 ORTHO05D008791 6.3e-118 427.9 295 74.2
FAN15G0115 Fragaria x ananassa HOM05D001587 ORTHO05D008791 1.4e-117 426.8 332 68.1
AL1G52680 Arabidopsis lyrata HOM05D001587 ORTHO05D008791 9.2e-117 424.1 302 70.5
Sp1g33880 Schrenkiella parvula HOM05D001587 ORTHO05D008791 2.0e-116 422.9 301 70.8
AT1G45110 Arabidopsis thaliana HOM05D001587 ORTHO05D008791 7.7e-116 421.0 302 70.2
Carub.0001s3551 Capsella rubella HOM05D001587 ORTHO05D008791 1.7e-115 419.9 302 69.2
A10p07100 Brassica napus HOM05D001587 ORTHO05D008791 2.3e-115 419.5 301 70.1
BraA10t42958Z Brassica rapa HOM05D001587 ORTHO05D008791 2.3e-115 419.5 301 70.1
BcaC08g42893 Brassica carinata HOM05D001587 ORTHO05D008791 2.9e-115 419.1 301 70.1
C06p01170 Brassica napus HOM05D001587 ORTHO05D008791 2.9e-115 419.1 301 70.1
BolC6t35253H Brassica oleracea HOM05D001587 ORTHO05D008791 2.9e-115 419.1 301 70.1
Rhsim07G0243600 Rhododendron simsii HOM05D001587 ORTHO05D008791 2.9e-115 419.1 293 73.7
CiPaw.07G156300 Carya illinoinensis HOM05D001587 ORTHO05D008791 5.0e-115 418.3 282 77.0
Thhalv10011622m.g Eutrema salsugineum HOM05D001587 ORTHO05D008791 1.5e-114 416.8 301 69.8
BcaB07g33894 Brassica carinata HOM05D001587 ORTHO05D008791 2.5e-114 416.0 302 68.5
CARHR036210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 3.3e-114 415.6 301 70.1
CDE04G1582 Ceratophyllum demersum HOM05D001587 ORTHO05D008791 1.4e-112 410.2 300 69.0
Aa31sc185G120 Aethionema arabicum HOM05D001587 ORTHO05D008791 3.0e-112 409.1 337 64.1
FAN20G2929 Fragaria x ananassa HOM05D001587 ORTHO05D008791 3.0e-112 409.1 306 70.6
Os10g0414500 Oryza sativa ssp. japonica HOM05D001587 ORTHO05D008791 9.8e-111 404.1 293 69.6
Medtr3g112310 Medicago truncatula HOM05D001587 ORTHO05D008791 2.2e-110 402.9 277 73.3
Gohir.A06G007600 Gossypium hirsutum HOM05D001587 ORTHO05D008791 2.9e-110 402.5 253 78.3
unitig_578.g16081 Utricularia gibba HOM05D001587 ORTHO05D008791 4.1e-109 398.7 305 69.5
Zm00001eb048090 Zea mays HOM05D001587 ORTHO05D008791 7.0e-109 397.9 293 69.3
VMungo1309G0203 Vigna mungo HOM05D001587 ORTHO05D008791 9.2e-109 397.5 280 71.1
HPP92_024861 Vanilla planifolia HOM05D001587 ORTHO05D008791 3.3e-106 389.0 304 65.8
Haze_22561 Corylus avellana HOM05D001587 ORTHO05D008791 1.1e-101 374.0 360 59.7
arahy.Tifrunner.gnm1.ann1.R2LLHR Arachis hypogaea HOM05D001587 ORTHO05D008791 1.6e-100 370.2 449 48.1
TAR628G1547 Trochodendron aralioides HOM05D001587 ORTHO05D008791 1.0e-99 367.5 294 67.3
ATR0665G135 Amborella trichopoda HOM05D001587 ORTHO05D008791 6.6e-99 364.8 279 65.6
Dinv39461 Davidia involucrata HOM05D001587 ORTHO05D008791 1.2e-97 360.5 197 89.3
arahy.Tifrunner.gnm1.ann1.F22IQH Arachis hypogaea HOM05D001587 ORTHO05D008791 2.1e-97 359.8 470 45.7
vmacro04308 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 5.2e-96 355.1 520 42.9
ClCG08G014710 Citrullus lanatus HOM05D001587 ORTHO05D008791 3.2e-93 345.9 302 62.3
Ca_15490_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 4.1e-93 345.5 287 62.7
AUR62014470 Chenopodium quinoa HOM05D001587 ORTHO05D008791 1.0e-91 340.9 242 69.8
Psat0s471g0160 Pisum sativum HOM05D001587 ORTHO05D008791 1.3e-91 340.5 247 69.2
Actinidia15364 Actinidia chinensis HOM05D001587 ORTHO05D002654 1.1e-90 337.4 196 83.2
Mapoly0042s0010 Marchantia polymorpha HOM05D001587 ORTHO05D008791 1.1e-90 337.4 291 58.8
SalBow7G1285 Salvia bowleyana HOM05D001587 ORTHO05D008791 6.2e-89 331.6 197 81.7
SGA_v2.0_scaffold11G05847 Striga asiatica HOM05D001587 ORTHO05D008791 3.1e-88 329.3 197 80.7
AagrBONN_evm.TU.Sc2ySwM_344.3744 Anthoceros agrestis HOM05D001587 ORTHO05D008791 9.2e-85 317.8 297 56.2
Pp3c23_9730 Physcomitrium patens HOM05D001587 ORTHO05D008791 1.6e-84 317.0 290 56.6
SMO169G0295 Selaginella moellendorffii HOM05D001587 ORTHO05D008791 2.7e-84 316.2 305 54.8
vmacro07875 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 6.9e-80 301.6 182 80.8
MD08G1024000 Malus domestica HOM05D001587 ORTHO05D008791 2.2e-78 296.6 326 54.6
Ca_29810_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 2.7e-60 236.5 133 86.5
AagrBONN_evm.TU.Sc2ySwM_344.3737 Anthoceros agrestis HOM05D001587 ORTHO05D008791 1.3e-59 234.2 184 64.1
Dinv31791 Davidia involucrata HOM05D001587 ORTHO05D002654 1.8e-56 223.8 196 62.2
Glyma.04G029000 Glycine max HOM05D001587 ORTHO05D008791 2.4e-56 223.4 142 73.9
Psat3g187600 Pisum sativum HOM05D001587 ORTHO05D008791 3.4e-55 219.5 173 63.0
Cre13.g572000 Chlamydomonas reinhardtii HOM05D001587 ORTHO05D008791 1.3e-54 217.6 314 42.0
MCO14G527 Micromonas commoda HOM05D001587 ORTHO05D008791 7.4e-50 201.8 193 51.3
Manes.18G021412 Manihot esculenta HOM05D001587 ORTHO05D008791 1.8e-48 197.2 248 48.8
PRCOL_00005810 Prasinoderma coloniale HOM05D001587 ORTHO05D008791 1.3e-46 191.0 317 37.9
Psat3g187640 Pisum sativum HOM05D001587 ORTHO05D008791 2.2e-46 190.3 213 52.1
Psat5g097560 Pisum sativum HOM05D000922 ORTHO05D008791 2.3e-35 153.7 173 49.1
Psat5g097640 Pisum sativum HOM05D000922 ORTHO05D001851 3.8e-30 136.3 167 44.9
Hma1.2p1_1194F.1_g265720 Hydrangea macrophylla HOM05D001587 ORTHO05D014867 1.4e-29 134.4 115 63.5
AL1G52690 Arabidopsis lyrata HOM05D001587 ORTHO05D014867 5.2e-27 125.9 121 53.7
SEGI_08976 Sequoiadendron giganteum HOM05D001587 ORTHO05D008791 2.6e-26 123.6 77 75.3
SEGI_23158 Sequoiadendron giganteum HOM05D001587 ORTHO05D008791 5.7e-26 122.5 75 76.0
CARHR174630 Cardamine hirsuta HOM05D001587 ORTHO05D014867 7.2e-21 105.5 105 56.2
Ca_02074_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 6.1e-20 102.4 53 92.5
SEGI_08644 Sequoiadendron giganteum HOM05D001587 ORTHO05D014867 3.0e-19 100.1 83 56.6
CARHR293210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 1.7e-17 94.4 64 73.4
CSS0001111 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.7e-17 93.2 69 72.5
CSS0020626 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.7e-17 93.2 69 72.5
CSS0029664 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.7e-17 93.2 69 72.5
CSS0031048 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.7e-17 93.2 69 72.5
CSS0048350 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.7e-17 93.2 69 72.5
CSS0016398 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 4.8e-17 92.8 69 72.5
CSS0046073 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.4e-16 91.3 69 71.0
Psat4g126360 Pisum sativum HOM05D001587 ORTHO05D037360 9.1e-16 88.6 55 76.4
Potri.002G030701 Populus trichocarpa HOM05D001587 ORTHO05D014867 1.6e-15 87.8 110 49.1
CSS0002416 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 2.0e-15 87.4 58 77.6
COL.COLO4_00685 Corchorus olitorius HOM05D030008 ORTHO05D034598 1.3e-14 84.7 155 31.0
Sabra02G0024500 Salix brachista HOM05D001587 ORTHO05D037360 2.0e-07 60.8 38 71.1


User provided reference genes

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