Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A288G20 Lonicera japonica HOM05D006355 ORTHO05D008284 4.0e-179 631.3 326 100.0
Rhsim05G0014000 Rhododendron simsii HOM05D006355 ORTHO05D008284 1.8e-107 393.3 335 65.7
Cpa.g.sc28.115 Carica papaya HOM05D006355 ORTHO05D008284 9.8e-101 370.9 335 63.9
GSVIVG01015151001 Vitis vinifera HOM05D006355 ORTHO05D008284 2.2e-100 369.8 327 64.8
QL02p061794 Quercus lobata HOM05D006355 ORTHO05D008284 2.9e-100 369.4 333 62.8
Haze_25952 Corylus avellana HOM05D006355 ORTHO05D008284 4.9e-100 368.6 335 62.4
Hma1.2p1_0672F.1_g200900 Hydrangea macrophylla HOM05D006355 ORTHO05D008284 6.4e-100 368.2 324 63.0
CiPaw.03G211000 Carya illinoinensis HOM05D006355 ORTHO05D008284 8.3e-100 367.9 335 62.7
QL02p061767 Quercus lobata HOM05D006355 ORTHO05D008284 1.1e-99 367.5 333 62.5
Cfa003044 Carpinus fangiana HOM05D006355 ORTHO05D008284 2.4e-99 366.3 335 62.1
Thecc.09G082800 Theobroma cacao HOM05D006355 ORTHO05D008284 5.4e-99 365.2 335 62.4
TAR413G0001 Trochodendron aralioides HOM05D006355 ORTHO05D008284 5.4e-99 365.2 332 64.5
DCAR_024718 Daucus carota HOM05D006355 ORTHO05D008284 1.6e-98 363.6 331 62.8
Gohir.D07G013200 Gossypium hirsutum HOM05D006355 ORTHO05D008284 1.0e-97 360.9 335 60.9
Peaxi162Scf00494g00027 Petunia axillaris HOM05D006355 ORTHO05D008284 1.0e-97 360.9 329 61.1
Gorai.001G013900 Gossypium raimondii HOM05D006355 ORTHO05D008284 3.9e-97 359.0 335 60.6
Nitab4.5_0002079g0060 Nicotiana tabacum HOM05D006355 ORTHO05D008284 3.3e-96 355.9 328 61.0
Manes.16G098900 Manihot esculenta HOM05D006355 ORTHO05D008284 9.5e-96 354.4 334 62.0
Solyc07g041020.3 Solanum lycopersicum HOM05D006355 ORTHO05D008284 3.6e-95 352.4 325 60.6
Migut.L01533 Erythranthe guttata HOM05D006355 ORTHO05D008284 1.1e-94 350.9 333 59.5
Gohir.A07G013400 Gossypium hirsutum HOM05D006355 ORTHO05D008284 1.1e-94 350.9 335 59.7
HanXRQChr12g0354551 Helianthus annuus HOM05D006355 ORTHO05D008284 5.2e-94 348.6 326 60.1
ECA234G3558 Erigeron canadensis HOM05D006355 ORTHO05D008284 2.0e-93 346.7 327 59.9
PGSC0003DMG400014101 Solanum tuberosum HOM05D006355 ORTHO05D008284 4.4e-93 345.5 327 60.2
CAN.G35.5 Capsicum annuum HOM05D006355 ORTHO05D008284 9.9e-93 344.4 328 58.8
Eucgr.C00847 Eucalyptus grandis HOM05D006355 ORTHO05D008284 3.7e-92 342.4 335 59.1
Atru.chr7.1648 Acer truncatum HOM05D006355 ORTHO05D008284 7.1e-91 338.2 334 59.9
Sopen07g020150 Solanum pennellii HOM05D006355 ORTHO05D008284 7.1e-91 338.2 325 58.5
Oeu010827.1 Olea europaea HOM05D006355 ORTHO05D008284 2.7e-90 336.3 335 58.2
Nitab4.5_0002842g0040 Nicotiana tabacum HOM05D006355 ORTHO05D008284 3.5e-90 335.9 335 57.9
vmacro17166 Vaccinium macrocarpon HOM05D006355 ORTHO05D008284 4.6e-90 335.5 335 58.2
MELO3C004639.2 Cucumis melo HOM05D006355 ORTHO05D008284 6.0e-90 335.1 333 58.6
ClCG11G001610 Citrullus lanatus HOM05D006355 ORTHO05D008284 1.0e-89 334.3 334 58.7
Sed0027351 Sechium edule HOM05D006355 ORTHO05D008284 1.7e-89 333.6 330 59.4
Aqoxy7G01135 Aquilegia oxysepala HOM05D006355 ORTHO05D008284 3.0e-89 332.8 333 60.1
TWI34G0237 Tripterygium wilfordii HOM05D006355 ORTHO05D008284 3.9e-89 332.4 333 58.0
CsaV3_2G001300 Cucumis sativus L. HOM05D006355 ORTHO05D008284 3.3e-88 329.3 333 57.7
SalBow1G0189 Salvia bowleyana HOM05D006355 ORTHO05D008284 3.3e-88 329.3 335 57.0
Potri.006G146200 Populus trichocarpa HOM05D006355 ORTHO05D008284 4.3e-88 328.9 335 57.9
Cc06_g11800 Coffea canephora HOM05D006355 ORTHO05D008284 2.8e-87 326.2 334 57.5
arahy.Tifrunner.gnm1.ann1.I94R61 Arachis hypogaea HOM05D006355 ORTHO05D008284 4.7e-87 325.5 332 58.4
Glyma.17G052200 Glycine max HOM05D006355 ORTHO05D008284 3.1e-86 322.8 337 57.6
Nn8g38760 Nelumbo nucifera HOM05D006355 ORTHO05D008284 3.1e-86 322.8 333 57.7
Nn8g41302 Nelumbo nucifera HOM05D006355 ORTHO05D008284 3.1e-86 322.8 333 57.7
SGA_v2.0_scaffold21G09447 Striga asiatica HOM05D006355 ORTHO05D008284 3.1e-86 322.8 329 57.4
Lj4g0004716 Lotus japonicus HOM05D006355 ORTHO05D008284 6.8e-86 321.6 331 57.1
Lsat_1_v5_gn_5_143521 Lactuca sativa HOM05D006355 ORTHO05D008284 8.9e-86 321.2 319 58.0
Ciclev10008972m.g Citrus clementina HOM05D006355 ORTHO05D008284 3.4e-85 319.3 332 56.3
CANSAT56G3969 Cannabis sativa HOM05D006355 ORTHO05D008284 4.4e-85 318.9 330 55.5
Glyma.13G107200 Glycine max HOM05D006355 ORTHO05D008284 4.4e-85 318.9 336 56.2
CANSAT56G1278 Cannabis sativa HOM05D006355 ORTHO05D008284 2.2e-84 316.6 330 55.2
Duzib168G2189 Durio zibethinus HOM05D006355 ORTHO05D008284 2.2e-84 316.6 333 56.8
Prupe.7G204300 Prunus persica HOM05D006355 ORTHO05D008284 6.0e-82 308.5 329 55.3
RcHm_v2.0_Chr2g0094111 Rosa chinensis HOM05D006355 ORTHO05D008284 7.8e-82 308.1 335 55.8
Ca_21303_v3 Cicer arietinum L. HOM05D006355 ORTHO05D008284 1.3e-81 307.4 334 54.8
Phvul.003G133900 Phaseolus vulgaris HOM05D006355 ORTHO05D008284 1.3e-81 307.4 332 55.4
Psat4g016280 Pisum sativum HOM05D006355 ORTHO05D008284 2.3e-81 306.6 335 54.3
Hund08706 Selenicereus undatus HOM05D006355 ORTHO05D008284 3.3e-80 302.8 339 54.9
FvH4_1g08060 Fragaria vesca HOM05D006355 ORTHO05D008284 7.3e-80 301.6 335 57.3
FAN19G0491 Fragaria x ananassa HOM05D006355 ORTHO05D008284 7.3e-80 301.6 335 57.3
Lalb_Chr12g0199961 Lupinus albus HOM05D006355 ORTHO05D008284 9.6e-80 301.2 329 55.3
PGR142G1993 Punica granatum HOM05D006355 ORTHO05D008284 2.1e-79 300.1 331 53.5
Medtr4g125720 Medicago truncatula HOM05D006355 ORTHO05D008284 2.8e-79 299.7 333 53.2
COL.COLO4_18155 Corchorus olitorius HOM05D006355 ORTHO05D008284 3.6e-79 299.3 335 55.2
Sabra06G0115400 Salix brachista HOM05D006355 ORTHO05D008284 3.6e-79 299.3 375 50.4
TPR.G9437 Trifolium pratense HOM05D006355 ORTHO05D008284 4.7e-79 298.9 336 53.0
FAN28G1606 Fragaria x ananassa HOM05D006355 ORTHO05D008284 4.0e-78 295.8 335 55.8
FAN23G1962 Fragaria x ananassa HOM05D006355 ORTHO05D008284 2.0e-77 293.5 335 55.5
Thhalv10022802m.g Eutrema salsugineum HOM05D006355 ORTHO05D008284 3.4e-77 292.7 324 50.9
Sp3g32760 Schrenkiella parvula HOM05D006355 ORTHO05D008284 9.9e-77 291.2 327 52.3
FAN26G1509 Fragaria x ananassa HOM05D006355 ORTHO05D008284 1.4e-75 287.3 347 53.6
FAN26G2768 Fragaria x ananassa HOM05D006355 ORTHO05D008284 1.4e-75 287.3 347 53.6
CARHR109830 Cardamine hirsuta HOM05D006355 ORTHO05D008284 4.2e-75 285.8 326 51.5
Dinv36798 Davidia involucrata HOM05D006355 ORTHO05D008284 4.2e-75 285.8 274 57.3
BcaB03g16724 Brassica carinata HOM05D006355 ORTHO05D008284 2.1e-74 283.5 330 52.1
Carub.0003s3364 Capsella rubella HOM05D006355 ORTHO05D008284 3.5e-74 282.7 330 51.5
MBI11_g07532_MAGBIO Magnolia biondii HOM05D006355 ORTHO05D008284 4.6e-74 282.3 332 52.4
AT2G19385 Arabidopsis thaliana HOM05D006355 ORTHO05D008284 3.9e-73 279.3 326 50.6
C07p02840 Brassica napus HOM05D006355 ORTHO05D008284 5.1e-73 278.9 324 52.8
BolC7t40681H Brassica oleracea HOM05D006355 ORTHO05D008284 5.1e-73 278.9 324 52.8
Sc08g0008680 Simmondsia chinensis HOM05D006355 ORTHO05D008284 1.1e-72 277.7 341 52.2
A07p01380 Brassica napus HOM05D006355 ORTHO05D008284 1.9e-72 276.9 326 52.5
BcaC06g36568 Brassica carinata HOM05D006355 ORTHO05D008284 4.3e-72 275.8 326 52.5
BraA07t27933Z Brassica rapa HOM05D006355 ORTHO05D008284 1.6e-71 273.9 326 51.8
Aa31LG8G16390 Aethionema arabicum HOM05D006355 ORTHO05D008284 2.4e-70 270.0 323 49.2
Os01g0583200 Oryza sativa ssp. japonica HOM05D006355 ORTHO05D008284 4.0e-70 269.2 333 48.0
AL3G48940 Arabidopsis lyrata HOM05D006355 ORTHO05D008284 6.9e-70 268.5 326 49.4
MD02G1085300 Malus domestica HOM05D006355 ORTHO05D008284 1.2e-69 267.7 336 50.3
ATR0051G027 Amborella trichopoda HOM05D006355 ORTHO05D008284 3.4e-69 266.2 335 47.5
arahy.Tifrunner.gnm1.ann1.2VE13Z Arachis hypogaea HOM05D006355 ORTHO05D008284 1.3e-68 264.2 332 51.8
AUR62025162 Chenopodium quinoa HOM05D006355 ORTHO05D008284 6.4e-68 261.9 330 50.9
AUR62029015 Chenopodium quinoa HOM05D006355 ORTHO05D008284 1.1e-67 261.2 336 48.8
MD15G1212400 Malus domestica HOM05D006355 ORTHO05D008284 2.4e-67 260.0 338 50.6
VMungo1215G0260 Vigna mungo HOM05D006355 ORTHO05D008284 9.3e-67 258.1 312 53.5
CDE06G0893 Ceratophyllum demersum HOM05D006355 ORTHO05D008284 2.7e-66 256.5 332 48.5
PSO063G0296 Papaver somniferum HOM05D006355 ORTHO05D008284 6.7e-65 251.9 331 46.5
PSO832G0549 Papaver somniferum HOM05D006355 ORTHO05D008284 5.6e-64 248.8 331 46.2
Gohir.A05G032100 Gossypium hirsutum HOM05D006355 ORTHO05D008284 7.4e-64 248.4 327 50.2
Actinidia25231 Actinidia chinensis HOM05D006355 ORTHO05D008284 6.2e-63 245.4 155 74.8
EL10Ac8g19156 Beta vulgaris HOM05D006355 ORTHO05D008284 6.2e-63 245.4 411 42.6
Zm00001eb357030 Zea mays HOM05D006355 ORTHO05D008284 1.8e-62 243.8 325 48.6
HPP92_009733 Vanilla planifolia HOM05D006355 ORTHO05D008284 1.1e-51 208.0 334 41.9
SEGI_15381 Sequoiadendron giganteum HOM05D006355 ORTHO05D008284 2.7e-50 203.4 325 41.2
Pp3c3_280 Physcomitrium patens HOM05D006355 ORTHO05D008284 9.4e-43 178.3 323 39.3
Mapoly0108s0017 Marchantia polymorpha HOM05D006355 ORTHO05D008284 6.1e-42 175.6 268 42.5
CBR_g39727 Chara braunii HOM05D006355 ORTHO05D008284 3.9e-41 172.9 128 64.1
CSS0037261 Camellia sinensis var. sinensis HOM05D006355 ORTHO05D008284 1.7e-39 167.5 276 48.2
SMO200G0211 Selaginella moellendorffii HOM05D006355 ORTHO05D008284 2.2e-39 167.2 332 36.4
unitig_8.g3528 Utricularia gibba HOM05D001583 ORTHO05D001900 8.5e-36 155.2 324 38.9
AagrBONN_evm.TU.Sc2ySwM_228.3887 Anthoceros agrestis HOM05D006355 ORTHO05D008284 2.7e-34 150.2 265 39.2
AL3G48950 Arabidopsis lyrata HOM05D006355 ORTHO05D008284 2.3e-33 147.1 200 42.0
SGA_v2.0_scaffold23G10049 Striga asiatica HOM05D006355 ORTHO05D008284 6.7e-33 145.6 360 33.6
Carub.0003s3362 Capsella rubella HOM05D006355 ORTHO05D008284 2.0e-32 144.1 366 33.9
AT2G19380 Arabidopsis thaliana HOM05D006355 ORTHO05D011679 2.4e-30 137.1 220 39.5
Cre17.g701050 Chlamydomonas reinhardtii HOM05D006355 ORTHO05D008284 7.2e-27 125.6 139 45.3
PRCOL_00003845 Prasinoderma coloniale HOM05D006355 ORTHO05D008284 1.2e-26 124.8 128 46.9
MCO07G733 Micromonas commoda HOM05D006355 ORTHO05D008284 9.7e-24 115.2 138 42.8
SHI30664 Sapria himalayana HOM05D006355 ORTHO05D008284 4.8e-23 112.8 144 47.2
Migut.B00896 Erythranthe guttata HOM05D002142 ORTHO05D001189 2.4e-22 110.5 179 43.0
SHI23456 Sapria himalayana HOM05D006355 ORTHO05D008284 4.2e-19 99.8 57 68.4
SHI30666 Sapria himalayana HOM05D006355 ORTHO05D008284 1.2e-18 98.2 57 66.7
Aqoxy7G02122 Aquilegia oxysepala HOM05D006355 ORTHO05D008284 1.2e-16 91.7 242 34.7
Actinidia25232 Actinidia chinensis HOM05D006355 ORTHO05D008284 2.0e-16 90.9 123 52.0
Aqoxy4G01928 Aquilegia oxysepala HOM05D006355 ORTHO05D008284 4.8e-15 86.3 242 33.9
Os01g0583300 Oryza sativa ssp. japonica HOM05D006355 ORTHO05D300111 4.0e-09 66.6 47 68.1
GSVIVG01008148001 Vitis vinifera HOM05D006355 ORTHO05D000948 1.3e-07 61.6 78 48.7


User provided reference genes

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