Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A21T59 Lonicera japonica HOM05D005168 ORTHO05D006358 2.0e-42 175.3 84 100.0
Nitab4.5_0003251g0060 Nicotiana tabacum HOM05D005168 ORTHO05D006358 2.1e-18 95.5 77 58.4
Nitab4.5_0000337g0010 Nicotiana tabacum HOM05D005168 ORTHO05D006358 2.7e-18 95.1 77 58.4
unitig_22.g6797 Utricularia gibba HOM05D005168 ORTHO05D006358 7.8e-18 93.6 83 53.0
CSS0038486 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 1.7e-17 92.4 75 56.0
CAN.G727.4 Capsicum annuum HOM05D005168 ORTHO05D006358 2.3e-17 92.0 77 58.4
Cc10_g01450 Coffea canephora HOM05D005168 ORTHO05D006358 3.0e-17 91.7 77 57.1
Solyc04g054510.4 Solanum lycopersicum HOM05D005168 ORTHO05D006358 3.0e-17 91.7 77 58.4
Sopen04g024330 Solanum pennellii HOM05D005168 ORTHO05D006358 3.0e-17 91.7 77 58.4
PGSC0003DMG400022038 Solanum tuberosum HOM05D005168 ORTHO05D006358 3.0e-17 91.7 77 58.4
SalBow8G1113 Salvia bowleyana HOM05D005168 ORTHO05D006358 6.6e-17 90.5 77 54.5
Peaxi162Scf00553g00216 Petunia axillaris HOM05D005168 ORTHO05D006358 8.6e-17 90.1 77 55.8
SGA_v2.0_scaffold19G08553 Striga asiatica HOM05D005168 ORTHO05D006358 1.5e-16 89.4 79 51.9
SGA_v2.0_scaffold47G17500 Striga asiatica HOM05D005168 ORTHO05D006358 1.5e-16 89.4 79 51.9
Dinv40488 Davidia involucrata HOM05D005168 ORTHO05D006358 1.9e-16 89.0 68 58.8
MSTRG.22344 Avicennia marina HOM05D005168 ORTHO05D006358 2.5e-16 88.6 79 51.9
vmacro04368 Vaccinium macrocarpon HOM05D005168 ORTHO05D006358 5.6e-16 87.4 68 57.4
Hma1.2p1_0733F.1_g210170 Hydrangea macrophylla HOM05D005168 ORTHO05D006358 7.3e-16 87.0 79 55.7
Migut.N03173 Erythranthe guttata HOM05D005168 ORTHO05D006358 1.2e-15 86.3 77 51.9
CSS0004439 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 1.6e-15 85.9 81 51.9
DCAR_015742 Daucus carota HOM05D005168 ORTHO05D006358 1.6e-15 85.9 77 50.6
HanXRQChr04g0101211 Helianthus annuus HOM05D005168 ORTHO05D006358 3.6e-15 84.7 77 51.9
Lsat_1_v5_gn_2_14120 Lactuca sativa HOM05D005168 ORTHO05D006358 3.6e-15 84.7 79 50.6
Actinidia37940 Actinidia chinensis HOM05D005168 ORTHO05D006358 8.1e-15 83.6 79 49.4
ECA238G1857 Erigeron canadensis HOM05D005168 ORTHO05D006358 1.5e-13 79.3 79 46.8
Rhsim07G0250400 Rhododendron simsii HOM05D005168 ORTHO05D006358 8.4e-12 73.6 46 65.2
Cpa.g.sc58.102 Carica papaya HOM05D005168 ORTHO05D006358 6.0e-10 67.4 74 43.2
TWI56G1449 Tripterygium wilfordii HOM05D005168 ORTHO05D006358 6.0e-10 67.4 79 43.0
Manes.14G063600 Manihot esculenta HOM05D005168 ORTHO05D006358 7.8e-10 67.0 77 40.3
CARHR020540 Cardamine hirsuta HOM05D005168 ORTHO05D006358 1.0e-09 66.6 76 43.4
Aa31LG4G6030 Aethionema arabicum HOM05D005168 ORTHO05D006358 1.3e-09 66.2 76 39.5
Carub.0005s0380 Capsella rubella HOM05D005168 ORTHO05D006358 2.3e-09 65.5 74 44.6
BcaB03g14336 Brassica carinata HOM05D005168 ORTHO05D006358 3.0e-09 65.1 76 42.1
BcaB03g14344 Brassica carinata HOM05D005168 ORTHO05D006358 3.0e-09 65.1 76 42.1
A07p16030 Brassica napus HOM05D005168 ORTHO05D006358 3.0e-09 65.1 76 42.1
C07p23400 Brassica napus HOM05D005168 ORTHO05D006358 3.0e-09 65.1 76 42.1
BolC7t42872H Brassica oleracea HOM05D005168 ORTHO05D006358 3.0e-09 65.1 76 42.1
BraA07t29331Z Brassica rapa HOM05D005168 ORTHO05D006358 3.0e-09 65.1 76 42.1
Sp1g17830 Schrenkiella parvula HOM05D005168 ORTHO05D006358 3.0e-09 65.1 76 42.1
Thhalv10009132m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 3.9e-09 64.7 74 43.2
THA.LOC104811420 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 3.9e-09 64.7 76 40.8
THA.LOC104825468 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 3.9e-09 64.7 76 40.8
BcaC05g25900 Brassica carinata HOM05D005168 ORTHO05D006358 5.1e-09 64.3 74 43.2
A06p16200 Brassica napus HOM05D005168 ORTHO05D006358 5.1e-09 64.3 74 43.2
C05p18550 Brassica napus HOM05D005168 ORTHO05D006358 5.1e-09 64.3 74 43.2
BraA06t24725Z Brassica rapa HOM05D005168 ORTHO05D006358 5.1e-09 64.3 74 43.2
CARHR146930 Cardamine hirsuta HOM05D005168 ORTHO05D006358 5.1e-09 64.3 76 42.1
BcaB07g32021 Brassica carinata HOM05D005168 ORTHO05D006358 6.6e-09 63.9 70 45.7
BolC5t30566H Brassica oleracea HOM05D005168 ORTHO05D006358 6.6e-09 63.9 70 45.7
THA.LOC104825467 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 6.6e-09 63.9 76 40.8
AL5G14600 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 8.7e-09 63.5 74 43.2
Thhalv10019327m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 1.9e-08 62.4 76 40.8
Atru.chr1.3654 Acer truncatum HOM05D005168 ORTHO05D006358 3.3e-08 61.6 77 39.0
AT3G25940 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 3.3e-08 61.6 76 40.8
PSO541G4324 Papaver somniferum HOM05D005168 ORTHO05D006358 4.3e-08 61.2 79 44.3
PSO675G5410 Papaver somniferum HOM05D005168 ORTHO05D006358 4.3e-08 61.2 79 44.3
Ciclev10003775m.g Citrus clementina HOM05D005168 ORTHO05D006358 5.6e-08 60.8 76 39.5
GSVIVG01009945001 Vitis vinifera HOM05D005168 ORTHO05D006358 7.3e-08 60.5 86 39.5
ECA238G0944 Erigeron canadensis HOM05D005168 ORTHO05D006358 1.2e-07 59.7 71 38.0
Glyma.03G178900 Glycine max HOM05D005168 ORTHO05D006358 1.2e-07 59.7 81 43.2
Cre01.g018000 Chlamydomonas reinhardtii HOM05D005168 ORTHO05D006358 1.6e-07 59.3 71 42.3
Nn3g19859 Nelumbo nucifera HOM05D005168 ORTHO05D006358 1.6e-07 59.3 79 40.5
CiPaw.07G147200 Carya illinoinensis HOM05D005168 ORTHO05D006358 2.1e-07 58.9 75 40.0
AagrBONN_evm.TU.Sc2ySwM_368.3393 Anthoceros agrestis HOM05D005168 ORTHO05D006358 2.8e-07 58.5 58 48.3
HPP92_028162 Vanilla planifolia HOM05D005168 ORTHO05D006358 2.8e-07 58.5 84 40.5
Potri.013G015000 Populus trichocarpa HOM05D005168 ORTHO05D006358 3.6e-07 58.2 75 38.7
Thecc.08G047200 Theobroma cacao HOM05D005168 ORTHO05D006358 4.7e-07 57.8 81 39.5
MCO15G369 Micromonas commoda HOM05D005168 ORTHO05D006358 8.1e-07 57.0 61 41.0
QL01p031168 Quercus lobata HOM05D005168 ORTHO05D006358 8.1e-07 57.0 83 38.6
Eucgr.C01258 Eucalyptus grandis HOM05D005168 ORTHO05D006358 1.1e-06 56.6 75 42.7
Lj1g0018211 Lotus japonicus HOM05D005168 ORTHO05D006358 1.1e-06 56.6 77 36.4
Lalb_Chr11g0067001 Lupinus albus HOM05D005168 ORTHO05D006358 1.1e-06 56.6 81 37.0
Pp3c24_7070 Physcomitrium patens HOM05D005168 ORTHO05D006358 1.1e-06 56.6 78 39.7
VMungo1080G1160 Vigna mungo HOM05D005168 ORTHO05D006358 1.4e-06 56.2 77 37.7
arahy.Tifrunner.gnm1.ann1.GU7A1M Arachis hypogaea HOM05D005168 ORTHO05D006358 1.8e-06 55.8 77 39.0
MELO3C011355.2 Cucumis melo HOM05D005168 ORTHO05D006358 1.8e-06 55.8 75 41.3
SEGI_04309 Sequoiadendron giganteum HOM05D005168 ORTHO05D006358 1.8e-06 55.8 57 50.9
TPR.G9182 Trifolium pratense HOM05D005168 ORTHO05D006358 1.8e-06 55.8 75 40.0
Eucgr.H00960 Eucalyptus grandis HOM05D005168 ORTHO05D006358 2.4e-06 55.5 77 41.6
SMO351G0141 Selaginella moellendorffii HOM05D005168 ORTHO05D006358 2.4e-06 55.5 44 54.5
Haze_17776 Corylus avellana HOM05D005168 ORTHO05D006358 3.1e-06 55.1 75 37.3
Haze_22662 Corylus avellana HOM05D005168 ORTHO05D006358 3.1e-06 55.1 75 37.3
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 3.1e-06 55.1 77 37.7
Ca_00384_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 4.0e-06 54.7 77 36.4
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 4.0e-06 54.7 77 36.4
Os03g0711700 Oryza sativa ssp. japonica HOM05D005168 ORTHO05D006358 4.0e-06 54.7 81 38.3
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 5.2e-06 54.3 77 37.7
Duzib093G1099 Durio zibethinus HOM05D005168 ORTHO05D006358 5.2e-06 54.3 66 43.9
CsaV3_2G024260 Cucumis sativus L. HOM05D005168 ORTHO05D006358 6.9e-06 53.9 75 40.0
Gohir.A06G002600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 6.9e-06 53.9 81 38.3
Gohir.D06G005600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 6.9e-06 53.9 81 38.3
Gorai.010G002800 Gossypium raimondii HOM05D005168 ORTHO05D006358 6.9e-06 53.9 81 38.3
Aqoxy2G01931 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 9.0e-06 53.5 89 38.2
PGR031G0142 Punica granatum HOM05D005168 ORTHO05D006358 9.0e-06 53.5 75 40.0


User provided reference genes

Program Settings