Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A15G44 Lonicera japonica HOM05D005865 ORTHO05D006867 6.6e-279 963.4 478 100.0
Hma1.2p1_1100F.1_g257160 Hydrangea macrophylla HOM05D005865 ORTHO05D006867 5.7e-174 614.8 466 67.0
CSS0021595 Camellia sinensis var. sinensis HOM05D005865 ORTHO05D006867 6.3e-173 611.3 468 67.7
TAR381G0423 Trochodendron aralioides HOM05D005865 ORTHO05D006867 7.2e-169 597.8 467 66.4
Actinidia37960 Actinidia chinensis HOM05D005865 ORTHO05D006867 1.0e-167 594.0 466 66.5
Rhsim07G0252700 Rhododendron simsii HOM05D005865 ORTHO05D006867 9.8e-166 587.4 491 62.9
GSVIVG01008710001 Vitis vinifera HOM05D005865 ORTHO05D006867 1.7e-165 586.6 468 66.0
Thecc.08G054600 Theobroma cacao HOM05D005865 ORTHO05D006867 5.4e-164 581.6 469 65.0
Ciclev10000742m.g Citrus clementina HOM05D005865 ORTHO05D006867 6.2e-160 568.2 468 63.5
Atru.chr13.184 Acer truncatum HOM05D005865 ORTHO05D006867 6.8e-159 564.7 468 62.6
DCAR_013898 Daucus carota HOM05D005865 ORTHO05D006867 2.6e-158 562.8 486 62.3
vmacro04388 Vaccinium macrocarpon HOM05D005865 ORTHO05D006867 2.6e-158 562.8 510 60.4
Nn5g30889 Nelumbo nucifera HOM05D005865 ORTHO05D006867 3.4e-158 562.4 466 62.7
Duzib093G0711 Durio zibethinus HOM05D005865 ORTHO05D006867 2.2e-157 559.7 467 64.0
Lsat_1_v5_gn_2_5921 Lactuca sativa HOM05D005865 ORTHO05D006867 2.9e-157 559.3 461 61.8
Peaxi162Scf00174g01413 Petunia axillaris HOM05D005865 ORTHO05D006867 9.2e-156 554.3 461 62.7
Manes.18G007801 Manihot esculenta HOM05D005865 ORTHO05D006867 1.7e-154 550.1 464 63.1
Ah.00g000500 Amaranthus hybridus HOM05D005865 ORTHO05D006867 3.9e-154 548.9 470 60.2
PSO541G4963 Papaver somniferum HOM05D005865 ORTHO05D006867 3.9e-154 548.9 464 61.0
Potri.005G247500 Populus trichocarpa HOM05D005865 ORTHO05D006867 5.0e-154 548.5 467 63.2
Cfa014029 Carpinus fangiana HOM05D005865 ORTHO05D006867 1.5e-153 547.0 467 63.2
Gohir.A05G181600 Gossypium hirsutum HOM05D005865 ORTHO05D006867 1.5e-153 547.0 463 62.9
ECA238G0937 Erigeron canadensis HOM05D005865 ORTHO05D006867 1.9e-153 546.6 461 63.6
Aqoxy6G01868 Aquilegia oxysepala HOM05D005865 ORTHO05D006867 3.6e-152 542.3 464 59.5
Solyc04g082130.4 Solanum lycopersicum HOM05D005865 ORTHO05D006867 8.1e-152 541.2 465 61.3
Migut.N03192 Erythranthe guttata HOM05D005865 ORTHO05D006867 1.1e-151 540.8 465 62.2
Sopen04g035760 Solanum pennellii HOM05D005865 ORTHO05D006867 3.1e-151 539.3 465 61.1
PGSC0003DMG400009964 Solanum tuberosum HOM05D005865 ORTHO05D006867 3.1e-151 539.3 465 61.3
PSO675G0073 Papaver somniferum HOM05D005865 ORTHO05D006867 1.2e-150 537.3 464 60.8
Gorai.009G190100 Gossypium raimondii HOM05D005865 ORTHO05D006867 1.5e-150 537.0 463 62.2
Gohir.D05G184600 Gossypium hirsutum HOM05D005865 ORTHO05D006867 2.0e-150 536.6 461 62.3
MSTRG.1133 Avicennia marina HOM05D005865 ORTHO05D006867 1.3e-149 533.9 461 63.3
Prupe.1G357400 Prunus persica HOM05D005865 ORTHO05D006867 2.2e-149 533.1 448 63.2
HanXRQChr14g0428991 Helianthus annuus HOM05D005865 ORTHO05D006867 8.3e-149 531.2 462 60.0
PGR031G3425 Punica granatum HOM05D005865 ORTHO05D006867 1.1e-148 530.8 463 59.6
Hund05136 Selenicereus undatus HOM05D005865 ORTHO05D006867 4.1e-148 528.9 461 60.5
arahy.Tifrunner.gnm1.ann1.88Q24L Arachis hypogaea HOM05D005865 ORTHO05D006867 7.1e-148 528.1 464 58.0
RcHm_v2.0_Chr6g0303901 Rosa chinensis HOM05D005865 ORTHO05D006867 7.1e-148 528.1 474 60.3
Lalb_Chr03g0033591 Lupinus albus HOM05D005865 ORTHO05D006867 2.7e-147 526.2 470 58.5
SGA_v2.0_scaffold25G11198 Striga asiatica HOM05D005865 ORTHO05D006867 2.7e-147 526.2 472 60.0
CAN.G311.92 Capsicum annuum HOM05D005865 ORTHO05D006867 7.8e-147 524.6 461 60.3
Cc10_g00980 Coffea canephora HOM05D005865 ORTHO05D006867 3.9e-146 522.3 463 60.7
CANSAT56G1424 Cannabis sativa HOM05D005865 ORTHO05D006867 6.6e-146 521.5 469 58.8
Phvul.001G001600 Phaseolus vulgaris HOM05D005865 ORTHO05D006867 5.6e-145 518.5 449 59.7
CiPaw.07G141800 Carya illinoinensis HOM05D005865 ORTHO05D006867 7.3e-145 518.1 466 60.7
Sed0014892 Sechium edule HOM05D005865 ORTHO05D006867 7.3e-145 518.1 466 58.4
COL.COLO4_26054 Corchorus olitorius HOM05D005865 ORTHO05D006867 3.6e-144 515.8 469 59.3
Glyma.14G222900 Glycine max HOM05D005865 ORTHO05D006867 3.6e-144 515.8 449 59.9
Lj5g0011422 Lotus japonicus HOM05D005865 ORTHO05D006867 3.6e-144 515.8 459 59.0
ClCG05G015260 Citrullus lanatus HOM05D005865 ORTHO05D006867 1.1e-143 514.2 459 58.8
VMungo0647G1107 Vigna mungo HOM05D005865 ORTHO05D006867 1.8e-143 513.5 449 58.8
CsaV3_4G037060 Cucumis sativus L. HOM05D005865 ORTHO05D006867 4.4e-142 508.8 460 58.7
arahy.Tifrunner.gnm1.ann1.YCE7MW Arachis hypogaea HOM05D005865 ORTHO05D006867 4.9e-141 505.4 465 57.6
Psat0s4771g0080 Pisum sativum HOM05D005865 ORTHO05D006867 8.4e-141 504.6 454 58.8
MD08G1005300 Malus domestica HOM05D005865 ORTHO05D006867 2.4e-140 503.1 454 59.9
Eucgr.F03532 Eucalyptus grandis HOM05D005865 ORTHO05D006867 5.4e-140 501.9 467 58.0
SalBow6G0433 Salvia bowleyana HOM05D005865 ORTHO05D006867 7.8e-139 498.0 459 58.8
Dinv31911 Davidia involucrata HOM05D005865 ORTHO05D006867 1.6e-136 490.3 402 65.7
ATR0665G248 Amborella trichopoda HOM05D005865 ORTHO05D006867 2.0e-134 483.4 453 56.1
HPP92_014547 Vanilla planifolia HOM05D005865 ORTHO05D006867 3.4e-134 482.6 453 56.3
TWI36G0296 Tripterygium wilfordii HOM05D005865 ORTHO05D006867 5.8e-134 481.9 440 59.1
Zm00001eb074060 Zea mays HOM05D005865 ORTHO05D006867 7.6e-134 481.5 452 55.1
Os04g0561700 Oryza sativa ssp. japonica HOM05D005865 ORTHO05D006867 4.9e-133 478.8 452 54.2
Sc15g0004650 Simmondsia chinensis HOM05D005865 ORTHO05D006867 6.0e-131 471.9 419 62.1
C05p19010 Brassica napus HOM05D005865 ORTHO05D006867 1.3e-130 470.7 465 54.2
BcaC05g25951 Brassica carinata HOM05D005865 ORTHO05D006867 1.7e-130 470.3 465 54.2
BolC5t30602H Brassica oleracea HOM05D005865 ORTHO05D006867 1.7e-130 470.3 462 54.5
CARHR020860 Cardamine hirsuta HOM05D005865 ORTHO05D006867 6.6e-130 468.4 462 55.0
Sabra05G0191400 Salix brachista HOM05D005865 ORTHO05D006867 6.6e-130 468.4 493 53.3
BraA06t24751Z Brassica rapa HOM05D005865 ORTHO05D006867 5.6e-129 465.3 462 53.2
BcaB07g32044 Brassica carinata HOM05D005865 ORTHO05D006867 1.6e-128 463.8 462 53.5
FAN27G0680 Fragaria x ananassa HOM05D005865 ORTHO05D006867 2.8e-128 463.0 520 50.6
Thhalv10007426m.g Eutrema salsugineum HOM05D005865 ORTHO05D006867 4.8e-128 462.2 463 53.6
Sp1g18130 Schrenkiella parvula HOM05D005865 ORTHO05D006867 8.1e-128 461.5 463 54.2
THA.LOC104813767 Tarenaya hassleriana HOM05D005865 ORTHO05D006867 1.1e-127 461.1 468 55.6
BraA07t29307Z Brassica rapa HOM05D005865 ORTHO05D006867 1.8e-127 460.3 456 54.6
AL1G33330 Arabidopsis lyrata HOM05D005865 ORTHO05D006867 2.6e-126 456.4 463 54.2
unitig_747.g21718 Utricularia gibba HOM05D005865 ORTHO05D006867 2.6e-126 456.4 462 54.5
Aa31LG7G4730 Aethionema arabicum HOM05D005865 ORTHO05D006867 4.4e-126 455.7 462 54.8
AT1G20410 Arabidopsis thaliana HOM05D005865 ORTHO05D006867 9.9e-126 454.5 460 53.9
Medtr1g026400 Medicago truncatula HOM05D005865 ORTHO05D006867 9.9e-126 454.5 455 54.5
Carub.0001s1989 Capsella rubella HOM05D005865 ORTHO05D006867 2.9e-125 453.0 463 53.1
BcaNung03380 Brassica carinata HOM05D005865 ORTHO05D006867 4.9e-125 452.2 462 53.5
C07p23040 Brassica napus HOM05D005865 ORTHO05D006867 4.9e-125 452.2 462 53.5
BolC7t42845H Brassica oleracea HOM05D005865 ORTHO05D006867 4.9e-125 452.2 462 53.5
AUR62013839 Chenopodium quinoa HOM05D005865 ORTHO05D006867 5.4e-124 448.7 494 50.6
Ca_13490_v3 Cicer arietinum L. HOM05D005865 ORTHO05D006867 1.1e-121 441.0 304 72.0
CDE02G0067 Ceratophyllum demersum HOM05D005865 ORTHO05D006867 4.3e-121 439.1 453 52.3
Hma1.2p1_1100F.1_g257170 Hydrangea macrophylla HOM05D005865 ORTHO05D006867 5.6e-121 438.7 261 81.2
Nitab4.5_0000588g0310 Nicotiana tabacum HOM05D005865 ORTHO05D006867 4.8e-120 435.6 465 52.0
QL02p013522 Quercus lobata HOM05D005865 ORTHO05D006867 2.0e-118 430.3 405 57.5
A07p15800 Brassica napus HOM05D005865 ORTHO05D006867 7.6e-118 428.3 477 50.9
MELO3C017004.2 Cucumis melo HOM05D005865 ORTHO05D006867 6.4e-117 425.2 458 52.4
AL1G33260 Arabidopsis lyrata HOM05D005865 ORTHO05D006867 1.2e-115 421.0 463 51.6
FvH4_2g37810 Fragaria vesca HOM05D005865 ORTHO05D006867 5.1e-114 415.6 417 53.7
A06p16480 Brassica napus HOM05D005865 ORTHO05D006867 5.6e-113 412.1 415 54.0
BcaB03g14323 Brassica carinata HOM05D005865 ORTHO05D006867 1.1e-103 381.3 260 71.9
AagrBONN_evm.TU.Sc2ySwM_344.4811 Anthoceros agrestis HOM05D005865 ORTHO05D006867 1.7e-101 374.0 447 46.1
Pp3c20_10980 Physcomitrium patens HOM05D005865 ORTHO05D006867 1.4e-100 370.9 448 45.8
Mapoly0006s0010 Marchantia polymorpha HOM05D005865 ORTHO05D006867 4.8e-96 355.9 451 43.7
Haze_22735 Corylus avellana HOM05D005865 ORTHO05D006867 4.5e-94 349.4 301 62.5
EL10Ac1g02030 Beta vulgaris HOM05D005865 ORTHO05D006867 8.5e-93 345.1 375 53.1
A07p15700 Brassica napus HOM05D005865 ORTHO05D006867 7.7e-86 322.0 232 69.4
SMO364G0210 Selaginella moellendorffii HOM05D005865 ORTHO05D006867 2.9e-85 320.1 266 59.0
AUR62036767 Chenopodium quinoa HOM05D005865 ORTHO05D006867 1.4e-84 317.8 352 50.9
SEGI_14934 Sequoiadendron giganteum HOM05D005865 ORTHO05D006867 3.8e-77 293.1 237 60.8
CBR_g81579 Chara braunii HOM05D005865 ORTHO05D006867 3.2e-76 290.0 497 37.4
BcaC07g42576 Brassica carinata HOM05D005865 ORTHO05D006867 6.1e-67 259.2 246 57.3
MCO16G112 Micromonas commoda HOM05D005865 ORTHO05D006867 6.1e-51 206.1 251 43.8
Cpa.g.sc26.238 Carica papaya HOM05D005865 ORTHO05D006867 1.7e-48 198.0 170 60.6
PRCOL_00003715 Prasinoderma coloniale HOM05D005865 ORTHO05D006867 4.9e-48 196.4 492 29.7
MELO3C035627.2 Cucumis melo HOM05D005865 ORTHO05D006867 5.6e-36 156.4 186 50.5
Cpa.g.sc26.237 Carica papaya HOM05D005865 ORTHO05D006867 9.8e-33 145.6 136 54.4
MD15G1004800 Malus domestica HOM05D005865 ORTHO05D006867 8.3e-32 142.5 106 69.8
Hma1.2p1_1100F.1_g257120 Hydrangea macrophylla HOM05D005865 ORTHO05D006867 3.2e-31 140.6 206 42.2
Rhsim11G0079600 Rhododendron simsii HOM05D005865 ORTHO05D006867 4.1e-23 113.6 88 60.2
A07p15690 Brassica napus HOM05D005865 ORTHO05D006867 4.6e-22 110.2 135 44.4
FAN15G0850 Fragaria x ananassa HOM05D005865 ORTHO05D006867 3.9e-21 107.1 115 46.1
Cre12.g506900 Chlamydomonas reinhardtii HOM05D005865 ORTHO05D006867 5.6e-20 103.2 315 26.3
Oeu025004.1 Olea europaea HOM05D005865 ORTHO05D006867 1.2e-19 102.1 91 53.8
Cpa.g.sc26.239 Carica papaya HOM05D005865 ORTHO05D006867 4.0e-18 97.1 45 95.6
MELO3C032646.2 Cucumis melo HOM05D005865 ORTHO05D006867 6.9e-18 96.3 101 49.5
SEGI_13350 Sequoiadendron giganteum HOM05D005865 ORTHO05D006867 8.9e-18 95.9 126 40.5
MELO3C035121.2 Cucumis melo HOM05D005865 ORTHO05D000044 2.1e-14 84.7 65 66.2
SHI04101 Sapria himalayana HOM05D005865 ORTHO05D006867 6.6e-13 79.7 189 33.3
SHI04100 Sapria himalayana HOM05D005865 ORTHO05D006867 2.1e-11 74.7 116 37.9
EL10Ac1g02029 Beta vulgaris HOM05D056011 ORTHO05D006867 2.8e-11 74.3 39 82.1
Lj2A91G56 Lonicera japonica HOM05D005865 ORTHO05D006867 8.1e-11 72.8 39 87.2
MELO3C031410.2 Cucumis melo HOM05D005865 ORTHO05D006867 1.4e-10 72.0 111 38.7
FAN20G0402 Fragaria x ananassa HOM05D005865 ORTHO05D006867 2.9e-08 64.3 74 41.9
Rhsim09G0051200 Rhododendron simsii HOM05D005337 ORTHO05D006567 3.2e-07 60.8 55 50.9


User provided reference genes

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