Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0023809 Lotus japonicus HOM05D010941 ORTHO05D000412 1.5e-83 312.8 154 100.0
Phvul.005G125700 Phaseolus vulgaris HOM05D000581 ORTHO05D000412 8.9e-36 154.1 151 55.0
Glyma.13G317900 Glycine max HOM05D000581 ORTHO05D000412 1.5e-35 153.3 151 55.0
Medtr2g085155 Medicago truncatula HOM05D010941 ORTHO05D000412 3.0e-31 139.0 173 46.8
Medtr2g086010 Medicago truncatula HOM05D010941 ORTHO05D000412 3.0e-31 139.0 149 50.3
Lalb_Chr24g0395251 Lupinus albus HOM05D000581 ORTHO05D000412 6.2e-29 131.3 132 50.8
TPR.G23789 Trifolium pratense HOM05D010941 ORTHO05D000412 1.1e-28 130.6 128 55.5
Duzib170G0821 Durio zibethinus HOM05D000581 ORTHO05D000412 5.8e-27 124.8 146 45.9
VMungo1080G1526 Vigna mungo HOM05D000581 ORTHO05D000412 7.6e-27 124.4 141 46.8
QL01p013207 Quercus lobata HOM05D000581 ORTHO05D000412 2.4e-25 119.4 138 43.5
CiPaw.13G138400 Carya illinoinensis HOM05D000581 ORTHO05D000412 1.5e-22 110.2 140 39.3
Gorai.009G087000 Gossypium raimondii HOM05D000581 ORTHO05D000412 1.5e-22 110.2 146 41.8
Cfa010058 Carpinus fangiana HOM05D000581 ORTHO05D000412 4.4e-19 98.6 108 44.4
Sed0003716 Sechium edule HOM05D010941 ORTHO05D000412 7.6e-19 97.8 145 38.6
Dinv29449 Davidia involucrata HOM05D000581 ORTHO05D000412 1.3e-18 97.1 131 38.9
Gohir.D05G085200 Gossypium hirsutum HOM05D010941 ORTHO05D000412 1.1e-17 94.0 105 45.7
Gohir.A05G082300 Gossypium hirsutum HOM05D010941 ORTHO05D000412 1.4e-17 93.6 105 46.7
CsaV3_6G014900 Cucumis sativus L. HOM05D010941 ORTHO05D000412 1.9e-17 93.2 145 37.2
Sabra09G0112800 Salix brachista HOM05D000581 ORTHO05D000412 4.2e-17 92.0 128 41.4
ClCG02G022070 Citrullus lanatus HOM05D010941 ORTHO05D000412 5.4e-17 91.7 145 35.9
PGR102G2836 Punica granatum HOM05D000581 ORTHO05D000412 7.1e-17 91.3 139 37.4
Ciclev10029511m.g Citrus clementina HOM05D000581 ORTHO05D000412 7.9e-16 87.8 146 32.2
Prupe.6G124800 Prunus persica HOM05D000581 ORTHO05D000412 1.9e-14 83.2 111 41.4
Duzib093G1459 Durio zibethinus HOM05D000581 ORTHO05D000412 4.3e-14 82.0 134 33.6
Duzib168G0145 Durio zibethinus HOM05D010941 ORTHO05D000412 4.3e-14 82.0 105 42.9
MELO3C035176.2 Cucumis melo HOM05D010941 ORTHO05D000412 5.6e-14 81.6 101 41.6
Solyc12g036230.3 Solanum lycopersicum HOM05D010941 ORTHO05D000412 9.6e-14 80.9 131 34.4
Thecc.09G287400 Theobroma cacao HOM05D010941 ORTHO05D000412 9.6e-14 80.9 84 46.4
Sopen12g016360 Solanum pennellii HOM05D010941 ORTHO05D000412 2.8e-13 79.3 133 33.8
Duzib128G0312 Durio zibethinus HOM05D000581 ORTHO05D000412 3.6e-13 79.0 134 31.3
Glyma.11G187300 Glycine max HOM05D000581 ORTHO05D000412 3.6e-13 79.0 141 32.6
MBI17_g16875_MAGBIO Magnolia biondii HOM05D000581 ORTHO05D000412 1.1e-12 77.4 152 26.3
QL01p013198 Quercus lobata HOM05D000581 ORTHO05D000412 1.1e-12 77.4 101 34.7
Manes.08G023500 Manihot esculenta HOM05D000581 ORTHO05D000412 1.4e-12 77.0 151 29.1
Thecc.05G085200 Theobroma cacao HOM05D000581 ORTHO05D000412 1.4e-12 77.0 150 30.0
Gohir.D09G136500 Gossypium hirsutum HOM05D000581 ORTHO05D000412 1.8e-12 76.6 134 31.3
GSVIVG01036181001 Vitis vinifera HOM05D010941 ORTHO05D000412 1.8e-12 76.6 93 40.9
Gorai.006G156600 Gossypium raimondii HOM05D000581 ORTHO05D000412 2.4e-12 76.3 134 31.3
Manes.09G059100 Manihot esculenta HOM05D000581 ORTHO05D000412 6.9e-12 74.7 145 29.0
EL10Ac4g09288 Beta vulgaris HOM05D000581 ORTHO05D000412 2.9e-10 69.3 127 26.0
Cpa.g.sc32.127 Carica papaya HOM05D000581 ORTHO05D000412 1.4e-09 67.0 89 39.3
Actinidia23447 Actinidia chinensis HOM05D000581 ORTHO05D000412 2.4e-09 66.2 140 27.9
Dinv31661 Davidia involucrata HOM05D000581 ORTHO05D000412 3.2e-09 65.9 162 27.2
Actinidia40207 Actinidia chinensis HOM05D000581 ORTHO05D000412 4.2e-09 65.5 140 27.9
HPP92_003275 Vanilla planifolia HOM05D000581 ORTHO05D000412 5.5e-09 65.1 133 30.1
Zm00001eb096040 Zea mays HOM05D000581 ORTHO05D000412 7.1e-09 64.7 137 26.3
Dinv38343 Davidia involucrata HOM05D000581 ORTHO05D000412 9.3e-09 64.3 127 26.8
TAR627G1138 Trochodendron aralioides HOM05D000581 ORTHO05D000412 1.2e-08 63.9 147 25.9
Os08g0557700 Oryza sativa ssp. japonica HOM05D000581 ORTHO05D000412 1.6e-08 63.5 137 26.3
Dinv40236 Davidia involucrata HOM05D000581 ORTHO05D000412 2.1e-08 63.2 141 24.1
Glyma.20G230800 Glycine max HOM05D000581 ORTHO05D000412 2.1e-08 63.2 127 25.2
Manes.15G019500 Manihot esculenta HOM05D000581 ORTHO05D000412 2.1e-08 63.2 127 26.8
SEGI_16835 Sequoiadendron giganteum HOM05D000581 ORTHO05D000412 2.1e-08 63.2 127 26.0
CiPaw.01G155900 Carya illinoinensis HOM05D000581 ORTHO05D000412 2.7e-08 62.8 127 23.6
Ciclev10002761m.g Citrus clementina HOM05D000581 ORTHO05D000412 2.7e-08 62.8 138 25.4
Mapoly0091s0072 Marchantia polymorpha HOM05D000581 ORTHO05D000412 2.7e-08 62.8 127 22.8
GSVIVG01017840001 Vitis vinifera HOM05D000581 ORTHO05D000412 4.6e-08 62.0 127 26.8
Glyma.10G157800 Glycine max HOM05D000581 ORTHO05D000412 6.0e-08 61.6 127 24.4
MD04G1212100 Malus domestica HOM05D000581 ORTHO05D000412 6.0e-08 61.6 127 24.4
QL10p017822 Quercus lobata HOM05D000581 ORTHO05D000412 7.9e-08 61.2 91 30.8
TAR365G0048 Trochodendron aralioides HOM05D000581 ORTHO05D000412 7.9e-08 61.2 127 26.0
AagrBONN_evm.TU.Sc2ySwM_117.2310 Anthoceros agrestis HOM05D000581 ORTHO05D000412 1.0e-07 60.8 128 24.2
Cfa010057 Carpinus fangiana HOM05D000581 ORTHO05D000412 1.0e-07 60.8 129 31.0
Gohir.A09G138100 Gossypium hirsutum HOM05D000581 ORTHO05D000412 1.0e-07 60.8 95 33.7
Lj5g0007928 Lotus japonicus HOM05D000581 ORTHO05D000412 1.0e-07 60.8 126 22.2
Actinidia05735 Actinidia chinensis HOM05D000581 ORTHO05D000412 1.3e-07 60.5 127 24.4
Medtr1g082290 Medicago truncatula HOM05D000581 ORTHO05D000412 1.3e-07 60.5 127 24.4
Rhsim07G0178400 Rhododendron simsii HOM05D000581 ORTHO05D000412 1.3e-07 60.5 127 24.4
BcaB04g19172 Brassica carinata HOM05D000581 ORTHO05D000412 1.8e-07 60.1 127 26.8
CSS0039077 Camellia sinensis var. sinensis HOM05D010941 ORTHO05D000412 1.8e-07 60.1 87 37.9
VMungo0720G0007 Vigna mungo HOM05D000581 ORTHO05D000412 1.8e-07 60.1 127 23.6
CDE06G0806 Ceratophyllum demersum HOM05D000581 ORTHO05D000412 2.3e-07 59.7 140 23.6
Lj3A807T52 Lonicera japonica HOM05D000581 ORTHO05D000412 2.3e-07 59.7 127 26.0
Lalb_Chr06g0167851 Lupinus albus HOM05D000581 ORTHO05D000412 2.3e-07 59.7 127 22.8
Ciclev10006135m.g Citrus clementina HOM05D000581 ORTHO05D000412 3.0e-07 59.3 127 25.2
Cc02_g32420 Coffea canephora HOM05D000581 ORTHO05D000412 3.0e-07 59.3 127 24.4
Nitab4.5_0000059g0300 Nicotiana tabacum HOM05D000581 ORTHO05D000412 3.0e-07 59.3 127 24.4
Psat6g148480 Pisum sativum HOM05D000581 ORTHO05D000412 3.0e-07 59.3 127 23.6
Sc16g0008270 Simmondsia chinensis HOM05D000581 ORTHO05D000412 3.0e-07 59.3 127 24.4
QL06p006489 Quercus lobata HOM05D000581 ORTHO05D000412 3.9e-07 58.9 127 23.6
ATR0012G044 Amborella trichopoda HOM05D000581 ORTHO05D000412 5.1e-07 58.5 134 23.9
CAN.G134.229 Capsicum annuum HOM05D000581 ORTHO05D000412 6.7e-07 58.2 127 23.6
Cfa016574 Carpinus fangiana HOM05D000581 ORTHO05D000412 6.7e-07 58.2 102 30.4
Sed0015069 Sechium edule HOM05D000581 ORTHO05D000412 6.7e-07 58.2 127 23.6
TWI12G0413 Tripterygium wilfordii HOM05D000581 ORTHO05D000412 6.7e-07 58.2 141 24.8
COL.COLO4_13557 Corchorus olitorius HOM05D000581 ORTHO05D000412 8.7e-07 57.8 127 22.0
Gohir.D13G178400 Gossypium hirsutum HOM05D000581 ORTHO05D000412 8.7e-07 57.8 127 23.6
Gorai.013G203600 Gossypium raimondii HOM05D000581 ORTHO05D000412 8.7e-07 57.8 127 23.6
Manes.03G189000 Manihot esculenta HOM05D000581 ORTHO05D000412 8.7e-07 57.8 127 24.4
Oeu061788.1 Olea europaea HOM05D000581 ORTHO05D000412 8.7e-07 57.8 129 27.1
Solyc01g098400.3 Solanum lycopersicum HOM05D000581 ORTHO05D000412 8.7e-07 57.8 127 24.4
Sopen01g041970 Solanum pennellii HOM05D000581 ORTHO05D000412 8.7e-07 57.8 127 24.4
Gohir.A13G172600 Gossypium hirsutum HOM05D000581 ORTHO05D000412 1.1e-06 57.4 127 23.6
Sopen01g032360 Solanum pennellii HOM05D000581 ORTHO05D000412 1.1e-06 57.4 127 23.6
PGSC0003DMG400032101 Solanum tuberosum HOM05D000581 ORTHO05D000412 1.1e-06 57.4 127 23.6
Thecc.09G288300 Theobroma cacao HOM05D000581 ORTHO05D000412 1.1e-06 57.4 147 23.8
CAN.G1157.4 Capsicum annuum HOM05D000581 ORTHO05D000412 1.5e-06 57.0 127 23.6
Haze_23422 Corylus avellana HOM05D010941 ORTHO05D000412 1.5e-06 57.0 90 34.4
Eucgr.H03658 Eucalyptus grandis HOM05D000581 ORTHO05D000412 1.5e-06 57.0 127 24.4
Thhalv10021689m.g Eutrema salsugineum HOM05D000581 ORTHO05D000412 1.5e-06 57.0 127 26.0
FAN17G2675 Fragaria x ananassa HOM05D000581 ORTHO05D000412 1.5e-06 57.0 127 24.4
Aa31LG8G8190 Aethionema arabicum HOM05D000581 ORTHO05D000412 1.9e-06 56.6 127 27.6
Cfa015522 Carpinus fangiana HOM05D000581 ORTHO05D000412 1.9e-06 56.6 127 23.6
Duzib168G1845 Durio zibethinus HOM05D000581 ORTHO05D000412 1.9e-06 56.6 147 25.9
Atru.chr1.2688 Acer truncatum HOM05D000581 ORTHO05D000412 2.5e-06 56.2 127 24.4
Atru.chr4.2715 Acer truncatum HOM05D000581 ORTHO05D000412 2.5e-06 56.2 127 24.4
BcaB04g20584 Brassica carinata HOM05D000581 ORTHO05D000412 2.5e-06 56.2 127 26.8
Cc03_g02630 Coffea canephora HOM05D000581 ORTHO05D000412 2.5e-06 56.2 127 26.0
Migut.G00235 Erythranthe guttata HOM05D000581 ORTHO05D000412 2.5e-06 56.2 127 25.2
Lj3g0026832 Lotus japonicus HOM05D000581 ORTHO05D000412 2.5e-06 56.2 76 35.5
Sp3g19550 Schrenkiella parvula HOM05D000581 ORTHO05D000412 2.5e-06 56.2 127 26.0
VMungo1127G1930 Vigna mungo HOM05D000581 ORTHO05D000412 2.5e-06 56.2 114 28.9
AL3G35620 Arabidopsis lyrata HOM05D000581 ORTHO05D000412 3.3e-06 55.8 127 26.0
AT3G21510 Arabidopsis thaliana HOM05D000581 ORTHO05D000412 3.3e-06 55.8 127 26.0
arahy.Tifrunner.gnm1.ann1.L144P6 Arachis hypogaea HOM05D010941 ORTHO05D000412 3.3e-06 55.8 68 45.6
Cpa.g.sc16.84 Carica papaya HOM05D000581 ORTHO05D000412 3.3e-06 55.8 127 24.4
Duzib170G0963 Durio zibethinus HOM05D000581 ORTHO05D000412 3.3e-06 55.8 142 23.9
Gohir.D10G164000 Gossypium hirsutum HOM05D000581 ORTHO05D000412 3.3e-06 55.8 127 24.4
Cfa010060 Carpinus fangiana HOM05D000581 ORTHO05D000412 4.3e-06 55.5 141 22.7
Haze_01027 Corylus avellana HOM05D000581 ORTHO05D000412 4.3e-06 55.5 127 23.6
Duzib151G0330 Durio zibethinus HOM05D000581 ORTHO05D000412 4.3e-06 55.5 127 24.4
FvH4_4g16820 Fragaria vesca HOM05D000581 ORTHO05D000412 4.3e-06 55.5 127 23.6
FAN12G2071 Fragaria x ananassa HOM05D000581 ORTHO05D000412 4.3e-06 55.5 127 23.6
FAN12G3718 Fragaria x ananassa HOM05D000581 ORTHO05D000412 4.3e-06 55.5 127 23.6
RcHm_v2.0_Chr3g0453481 Rosa chinensis HOM05D000581 ORTHO05D000412 4.3e-06 55.5 127 23.6
PGSC0003DMG400028593 Solanum tuberosum HOM05D000581 ORTHO05D000412 4.3e-06 55.5 127 22.8
TPR.G18038 Trifolium pratense HOM05D000581 ORTHO05D000412 4.3e-06 55.5 127 26.0
MSTRG.3966 Avicennia marina HOM05D000581 ORTHO05D000412 5.6e-06 55.1 127 25.2
Ca_10080_v3 Cicer arietinum L. HOM05D000581 ORTHO05D000412 5.6e-06 55.1 132 23.5
Gohir.A10G104700 Gossypium hirsutum HOM05D000581 ORTHO05D000412 5.6e-06 55.1 127 24.4
HanXRQChr09g0276221 Helianthus annuus HOM05D000581 ORTHO05D000412 5.6e-06 55.1 149 22.8
BcaC09g49088 Brassica carinata HOM05D000581 ORTHO05D000412 7.4e-06 54.7 127 26.0
C01p42660 Brassica napus HOM05D000581 ORTHO05D000412 7.4e-06 54.7 127 26.0
BolC1t04222H Brassica oleracea HOM05D000581 ORTHO05D000412 7.4e-06 54.7 127 26.0
Carub.0003s2155 Capsella rubella HOM05D000581 ORTHO05D000412 7.4e-06 54.7 127 26.0
CARHR097440 Cardamine hirsuta HOM05D000581 ORTHO05D000412 7.4e-06 54.7 127 26.0
Duzib128G2008 Durio zibethinus HOM05D000581 ORTHO05D000412 7.4e-06 54.7 127 22.0
ECA232G2591 Erigeron canadensis HOM05D000581 ORTHO05D000412 7.4e-06 54.7 153 24.2
FvH4_6g18230 Fragaria vesca HOM05D018852 ORTHO05D022587 7.4e-06 54.7 147 25.9
FAN07G2395 Fragaria x ananassa HOM05D000581 ORTHO05D000412 7.4e-06 54.7 127 24.4
Oeu044805.1 Olea europaea HOM05D000581 ORTHO05D000412 7.4e-06 54.7 127 22.8
TAR623G0761 Trochodendron aralioides HOM05D000581 ORTHO05D000412 7.4e-06 54.7 93 30.1
CSS0009481 Camellia sinensis var. sinensis HOM05D000581 ORTHO05D000412 9.6e-06 54.3 127 24.4
Cpa.g.sc84.120 Carica papaya HOM05D000581 ORTHO05D000412 9.6e-06 54.3 127 20.5
CsaV3_1G039330 Cucumis sativus L. HOM05D000581 ORTHO05D000412 9.6e-06 54.3 146 23.3
Thecc.04G273700 Theobroma cacao HOM05D000581 ORTHO05D000412 9.6e-06 54.3 127 24.4


User provided reference genes

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