Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0021719 Lotus japonicus HOM05D005750 ORTHO05D007126 2.9e-183 645.2 346 100.0
Glyma.01G110900 Glycine max HOM05D005750 ORTHO05D007126 2.5e-142 509.2 345 81.7
VMungo0331G1407 Vigna mungo HOM05D005750 ORTHO05D007126 4.8e-138 495.0 346 76.6
Lalb_Chr07g0193351 Lupinus albus HOM05D005750 ORTHO05D007126 4.5e-136 488.4 359 73.3
arahy.Tifrunner.gnm1.ann1.CU0EG8 Arachis hypogaea HOM05D005750 ORTHO05D007126 6.5e-135 484.6 341 78.9
Phvul.010G008000 Phaseolus vulgaris HOM05D005750 ORTHO05D007126 1.4e-134 483.4 364 76.6
Psat7g247000 Pisum sativum HOM05D005750 ORTHO05D007126 1.2e-133 480.3 353 75.6
Medtr4g014710 Medicago truncatula HOM05D005750 ORTHO05D007126 3.0e-132 475.7 353 75.6
arahy.Tifrunner.gnm1.ann1.2Q187C Arachis hypogaea HOM05D005750 ORTHO05D007126 1.5e-131 473.4 341 75.4
TPR.G5219 Trifolium pratense HOM05D005750 ORTHO05D007126 1.5e-131 473.4 348 73.9
Glyma.03G076500 Glycine max HOM05D005750 ORTHO05D007126 1.5e-128 463.4 295 82.4
MD04G1146200 Malus domestica HOM05D005750 ORTHO05D007126 8.2e-122 441.0 270 82.2
CiPaw.09G205200 Carya illinoinensis HOM05D005750 ORTHO05D007126 2.4e-121 439.5 275 80.7
FvH4_6g12170 Fragaria vesca HOM05D005750 ORTHO05D007126 5.3e-121 438.3 282 79.4
FAN02G3889 Fragaria x ananassa HOM05D005750 ORTHO05D007126 5.3e-121 438.3 283 79.2
FAN09G4178 Fragaria x ananassa HOM05D005750 ORTHO05D007126 5.3e-121 438.3 282 79.4
MD12G1159400 Malus domestica HOM05D005750 ORTHO05D007126 2.6e-120 436.0 266 82.0
Ciclev10012396m.g Citrus clementina HOM05D005750 ORTHO05D007126 3.4e-120 435.6 265 81.5
FAN14G0046 Fragaria x ananassa HOM05D005750 ORTHO05D007126 4.5e-120 435.3 282 78.7
FAN14G1750 Fragaria x ananassa HOM05D005750 ORTHO05D007126 4.5e-120 435.3 282 78.7
ClCG10G021760 Citrullus lanatus HOM05D005750 ORTHO05D007126 5.9e-120 434.9 267 83.9
RcHm_v2.0_Chr3g0463971 Rosa chinensis HOM05D005750 ORTHO05D007126 5.9e-120 434.9 269 81.4
CsaV3_3G034210 Cucumis sativus L. HOM05D005750 ORTHO05D007126 2.2e-119 433.0 280 79.6
Prupe.6G269800 Prunus persica HOM05D005750 ORTHO05D007126 3.8e-119 432.2 255 84.7
MELO3C009196.2 Cucumis melo HOM05D005750 ORTHO05D007126 5.0e-119 431.8 280 79.3
Duzib093G0788 Durio zibethinus HOM05D005750 ORTHO05D007126 1.9e-118 429.9 277 78.3
Sed0027096 Sechium edule HOM05D005750 ORTHO05D007126 2.5e-118 429.5 271 81.9
Duzib128G1738 Durio zibethinus HOM05D005750 ORTHO05D007126 3.2e-118 429.1 276 78.6
Gohir.A01G224900 Gossypium hirsutum HOM05D005750 ORTHO05D007126 5.5e-118 428.3 269 81.0
Gohir.D01G214500 Gossypium hirsutum HOM05D005750 ORTHO05D007126 5.5e-118 428.3 269 81.0
Gorai.002G260600 Gossypium raimondii HOM05D005750 ORTHO05D007126 2.7e-117 426.0 269 80.7
QL07p036167 Quercus lobata HOM05D005750 ORTHO05D007126 1.0e-116 424.1 277 79.4
CANSAT35G0049 Cannabis sativa HOM05D005750 ORTHO05D007126 6.7e-116 421.4 274 80.7
Dinv35517 Davidia involucrata HOM05D005750 ORTHO05D007126 1.5e-115 420.2 266 78.6
Potri.016G110300 Populus trichocarpa HOM05D005750 ORTHO05D007126 7.4e-115 417.9 274 76.6
Cpa.g.sc56.104 Carica papaya HOM05D005750 ORTHO05D007126 1.4e-113 413.7 279 77.8
Manes.09G101500 Manihot esculenta HOM05D005750 ORTHO05D007126 1.4e-113 413.7 262 79.4
Thecc.05G023200 Theobroma cacao HOM05D005750 ORTHO05D007126 1.4e-113 413.7 272 77.2
COL.COLO4_14617 Corchorus olitorius HOM05D005750 ORTHO05D007126 2.4e-113 412.9 305 72.1
GSVIVG01034019001 Vitis vinifera HOM05D005750 ORTHO05D007126 4.1e-113 412.1 263 77.9
Atru.chr8.2137 Acer truncatum HOM05D005750 ORTHO05D007126 5.3e-113 411.8 260 81.5
vmacro20231 Vaccinium macrocarpon HOM05D005750 ORTHO05D007126 7.7e-112 407.9 261 79.3
TWI74G1070 Tripterygium wilfordii HOM05D005750 ORTHO05D007126 1.0e-111 407.5 275 76.0
EL10Ac5g11550 Beta vulgaris HOM05D005750 ORTHO05D007126 3.8e-111 405.6 260 77.7
Dinv37089 Davidia involucrata HOM05D005750 ORTHO05D007126 3.8e-111 405.6 267 79.0
TWI53G0977 Tripterygium wilfordii HOM05D005750 ORTHO05D007126 3.8e-111 405.6 275 76.0
CSS0046643 Camellia sinensis var. sinensis HOM05D005750 ORTHO05D007126 6.5e-111 404.8 255 79.2
Actinidia13787 Actinidia chinensis HOM05D005750 ORTHO05D007126 8.5e-111 404.4 252 80.6
DCAR_028833 Daucus carota HOM05D005750 ORTHO05D007126 8.5e-111 404.4 262 79.8
AUR62042943 Chenopodium quinoa HOM05D005750 ORTHO05D007126 1.1e-110 404.1 264 78.8
Ah.11g045300 Amaranthus hybridus HOM05D005750 ORTHO05D007126 4.2e-110 402.1 266 75.9
Hund15288 Selenicereus undatus HOM05D005750 ORTHO05D007126 5.5e-110 401.7 264 76.9
Nitab4.5_0000119g0240 Nicotiana tabacum HOM05D005750 ORTHO05D007126 7.2e-110 401.4 271 76.0
Eucgr.B02764 Eucalyptus grandis HOM05D005750 ORTHO05D007126 2.7e-109 399.4 261 78.2
TAR636G2178 Trochodendron aralioides HOM05D005750 ORTHO05D007126 1.8e-108 396.7 273 74.4
TAR623G1708 Trochodendron aralioides HOM05D005750 ORTHO05D007126 2.3e-108 396.4 273 72.5
Lj2A78G34 Lonicera japonica HOM05D005750 ORTHO05D007126 3.0e-108 396.0 274 74.1
MBI14_g32934_MAGBIO Magnolia biondii HOM05D005750 ORTHO05D007126 3.0e-108 396.0 257 78.6
Peaxi162Scf00014g00091 Petunia axillaris HOM05D005750 ORTHO05D007126 4.0e-108 395.6 258 77.5
PGR031G0365 Punica granatum HOM05D005750 ORTHO05D007126 4.0e-108 395.6 264 76.9
Cc06_g01740 Coffea canephora HOM05D005750 ORTHO05D007126 1.2e-107 394.0 279 72.8
Carub.0005s2072 Capsella rubella HOM05D005750 ORTHO05D007126 1.5e-107 393.7 280 73.6
CAN.G351.8 Capsicum annuum HOM05D005750 ORTHO05D007126 2.6e-107 392.9 258 76.7
MSTRG.26795 Avicennia marina HOM05D005750 ORTHO05D007126 5.7e-107 391.7 262 74.8
Aqoxy1G00732 Aquilegia oxysepala HOM05D005750 ORTHO05D007126 9.7e-107 391.0 261 75.9
Thhalv10010608m.g Eutrema salsugineum HOM05D005750 ORTHO05D007126 9.7e-107 391.0 285 71.9
Sopen10g036170 Solanum pennellii HOM05D005750 ORTHO05D007126 1.7e-106 390.2 256 76.2
AL5G35150 Arabidopsis lyrata HOM05D005750 ORTHO05D007126 2.2e-106 389.8 286 72.0
Aa31sc171G20 Aethionema arabicum HOM05D005750 ORTHO05D007126 8.2e-106 387.9 269 74.0
AT3G54130 Arabidopsis thaliana HOM05D005750 ORTHO05D007126 8.2e-106 387.9 268 75.0
C04p38380 Brassica napus HOM05D005750 ORTHO05D007126 1.8e-105 386.7 271 74.2
Haze_20940 Corylus avellana HOM05D005750 ORTHO05D007126 1.8e-105 386.7 254 77.2
THA.LOC104823389 Tarenaya hassleriana HOM05D005750 ORTHO05D007126 1.8e-105 386.7 261 75.5
Sp5g08260 Schrenkiella parvula HOM05D005750 ORTHO05D007126 5.3e-105 385.2 270 73.7
Sabra06G0073600 Salix brachista HOM05D005750 ORTHO05D007126 9.1e-105 384.4 319 63.9
CARHR164010 Cardamine hirsuta HOM05D005750 ORTHO05D007126 1.2e-104 384.0 271 73.4
BolC4t25415H Brassica oleracea HOM05D005750 ORTHO05D007126 1.6e-104 383.6 288 70.5
Sc01g0006740 Simmondsia chinensis HOM05D005750 ORTHO05D007126 2.0e-104 383.3 260 75.4
A04p05670 Brassica napus HOM05D005750 ORTHO05D007126 2.7e-104 382.9 269 74.3
A09p47130 Brassica napus HOM05D005750 ORTHO05D007126 3.5e-104 382.5 284 70.1
BraA09t40175Z Brassica rapa HOM05D005750 ORTHO05D007126 3.5e-104 382.5 284 70.1
BcaC02g09095 Brassica carinata HOM05D005750 ORTHO05D007126 5.9e-104 381.7 271 73.1
Sabra16G0106800 Salix brachista HOM05D005750 ORTHO05D007126 7.7e-104 381.3 275 72.0
C08p29390 Brassica napus HOM05D005750 ORTHO05D007126 3.8e-103 379.0 284 69.7
BolC8t50540H Brassica oleracea HOM05D005750 ORTHO05D007126 3.8e-103 379.0 284 69.7
BraA04t16263Z Brassica rapa HOM05D005750 ORTHO05D007126 3.8e-103 379.0 269 73.6
Sed0026182 Sechium edule HOM05D005750 ORTHO05D007126 2.5e-102 376.3 295 67.8
Lsat_1_v5_gn_8_99481 Lactuca sativa HOM05D005750 ORTHO05D007126 3.2e-102 375.9 207 87.0
Rhsim05G0204700 Rhododendron simsii HOM05D005750 ORTHO05D007126 5.5e-102 375.2 282 69.1
PSO384G4196 Papaver somniferum HOM05D005750 ORTHO05D007126 2.7e-101 372.9 261 72.8
BcaB02g08472 Brassica carinata HOM05D005750 ORTHO05D007126 6.1e-101 371.7 285 69.5
Migut.J00232 Erythranthe guttata HOM05D005750 ORTHO05D007126 8.0e-101 371.3 242 76.4
unitig_46.g18409 Utricularia gibba HOM05D005750 ORTHO05D007126 1.0e-100 370.9 252 75.0
Ca_23809_v3 Cicer arietinum L. HOM05D005750 ORTHO05D007126 1.4e-100 370.5 263 81.0
PSO339G6575 Papaver somniferum HOM05D005750 ORTHO05D007126 1.4e-100 370.5 261 72.8
Potri.006G095700 Populus trichocarpa HOM05D005750 ORTHO05D007126 8.8e-100 367.9 231 77.5
HanXRQChr16g0510541 Helianthus annuus HOM05D005750 ORTHO05D007126 2.0e-99 366.7 254 74.4
CDE02G4717 Ceratophyllum demersum HOM05D005750 ORTHO05D007126 4.8e-98 362.1 257 71.6
Hma1.2p1_0763F.1_g214560 Hydrangea macrophylla HOM05D005750 ORTHO05D007126 1.4e-97 360.5 274 67.9
Oeu004613.2 Olea europaea HOM05D005750 ORTHO05D007126 4.1e-97 359.0 305 62.6
BcaB01g00216 Brassica carinata HOM05D005750 ORTHO05D007126 8.0e-93 344.7 206 79.1
SGA_v2.0_scaffold240G44116 Striga asiatica HOM05D005750 ORTHO05D007126 8.9e-92 341.3 252 69.4
Zm00001eb367490 Zea mays HOM05D005750 ORTHO05D007126 4.9e-90 335.5 303 59.7
Os01g0851400 Oryza sativa ssp. japonica HOM05D005750 ORTHO05D007126 1.8e-89 333.6 284 63.4
CiPaw.10G154000 Carya illinoinensis HOM05D005750 ORTHO05D007126 2.0e-88 330.1 261 67.4
SEGI_00199 Sequoiadendron giganteum HOM05D005750 ORTHO05D007126 1.0e-87 327.8 261 63.2
Zm00001eb147810 Zea mays HOM05D005750 ORTHO05D007126 1.7e-87 327.0 297 60.9
Gohir.D04G128250 Gossypium hirsutum HOM05D005750 ORTHO05D007126 2.3e-87 326.6 263 66.5
Actinidia29137 Actinidia chinensis HOM05D005750 ORTHO05D007126 1.8e-84 317.0 231 72.3
Gorai.012G111300 Gossypium raimondii HOM05D005750 ORTHO05D007126 3.4e-83 312.8 263 64.6
TPR.G5190 Trifolium pratense HOM05D005750 ORTHO05D007126 8.6e-79 298.1 320 53.8
SGA_v2.0_scaffold85G26769 Striga asiatica HOM05D005750 ORTHO05D007126 1.7e-74 283.9 196 71.9
ECA236G1744 Erigeron canadensis HOM05D005750 ORTHO05D007126 2.9e-74 283.1 197 72.1
Nn2g13588 Nelumbo nucifera HOM05D005750 ORTHO05D007126 3.7e-74 282.7 185 77.3
HPP92_018186 Vanilla planifolia HOM05D005750 ORTHO05D007126 3.2e-73 279.6 305 53.4
AUR62025787 Chenopodium quinoa HOM05D005750 ORTHO05D007126 6.6e-71 271.9 183 77.0
PGSC0003DMG400019130 Solanum tuberosum HOM05D005750 ORTHO05D007126 1.5e-70 270.8 175 76.0
Solyc10g086770.3 Solanum lycopersicum HOM05D005750 ORTHO05D007126 1.7e-66 257.3 175 72.6
CBR_g865 Chara braunii HOM05D005750 ORTHO05D007126 3.6e-61 239.6 274 46.0
AagrBONN_evm.TU.Sc2ySwM_344.3267 Anthoceros agrestis HOM05D005750 ORTHO05D007126 1.8e-60 237.3 208 58.2
Pp3c7_8520 Physcomitrium patens HOM05D005750 ORTHO05D007126 2.2e-58 230.3 248 48.0
Nitab4.5_0006439g0020 Nicotiana tabacum HOM05D005750 ORTHO05D007126 9.9e-51 204.9 271 48.3
SMO203G0145 Selaginella moellendorffii HOM05D005750 ORTHO05D007126 3.9e-47 193.0 172 57.0
Cre11.g475450 Chlamydomonas reinhardtii HOM05D005750 ORTHO05D007126 3.6e-45 186.4 208 46.6
TAR636G1840 Trochodendron aralioides HOM05D005750 ORTHO05D007126 6.4e-42 175.6 185 54.6
MCO10G202 Micromonas commoda HOM05D005750 ORTHO05D007126 5.3e-36 156.0 321 33.6
Ca_23812_v3 Cicer arietinum L. HOM05D005750 ORTHO05D007126 9.3e-33 145.2 81 91.4
TAR402G0002 Trochodendron aralioides HOM05D005750 ORTHO05D007126 2.5e-30 137.1 84 83.3
PRCOL_00002333 Prasinoderma coloniale HOM05D005750 ORTHO05D007126 4.5e-27 126.3 283 32.5
Haze_26299 Corylus avellana HOM05D005750 ORTHO05D007126 1.9e-25 120.9 170 38.2
Nn2g11345 Nelumbo nucifera HOM05D005750 ORTHO05D007126 9.7e-22 108.6 54 96.3
ATR0618G451 Amborella trichopoda HOM05D005750 ORTHO05D007126 6.3e-21 105.9 55 90.9
A04p05660 Brassica napus HOM05D005750 ORTHO05D007126 1.7e-18 97.8 52 88.5
Glyma.14G192300 Glycine max HOM05D005325 ORTHO05D008457 1.6e-08 64.7 180 30.0
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 6.1e-08 62.8 150 31.3
Cpa.g.sc112.50 Carica papaya HOM05D005325 ORTHO05D008457 7.9e-08 62.4 183 29.0
Zm00001eb011730 Zea mays HOM05D005325 ORTHO05D008457 1.0e-07 62.0 182 26.9
arahy.Tifrunner.gnm1.ann1.VY3BKH Arachis hypogaea HOM05D005325 ORTHO05D008457 2.3e-07 60.8 180 29.4
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 3.0e-07 60.5 186 28.0
FvH4_5g19731 Fragaria vesca HOM05D005750 ORTHO05D035649 3.9e-07 60.1 56 62.5
Nitab4.5_0000408g0140 Nicotiana tabacum HOM05D005325 ORTHO05D008457 3.9e-07 60.1 180 26.7
Pp3c13_16720 Physcomitrium patens HOM05D005325 ORTHO05D008457 3.9e-07 60.1 163 30.7
Glyma.02G225500 Glycine max HOM05D005325 ORTHO05D008457 5.1e-07 59.7 180 28.9
Os03g0265200 Oryza sativa ssp. japonica HOM05D005325 ORTHO05D008457 5.1e-07 59.7 176 27.8
Prupe.6G060500 Prunus persica HOM05D005325 ORTHO05D008457 8.8e-07 58.9 178 28.7
VMungo0647G2564 Vigna mungo HOM05D005325 ORTHO05D008457 8.8e-07 58.9 177 27.7
GSVIVG01024786001 Vitis vinifera HOM05D005325 ORTHO05D008457 1.1e-06 58.5 184 28.8
Aa31LG5G6860 Aethionema arabicum HOM05D005325 ORTHO05D008457 2.0e-06 57.8 172 26.7
AT2G29640 Arabidopsis thaliana HOM05D005325 ORTHO05D008457 2.0e-06 57.8 154 26.6
FvH4_2g13931 Fragaria vesca HOM05D051764 ORTHO05D035649 2.0e-06 57.8 49 67.3
Glyma.07G142100 Glycine max HOM05D005750 ORTHO05D007126 2.0e-06 57.8 41 68.3
Ciclev10029368m.g Citrus clementina HOM05D005325 ORTHO05D008457 2.6e-06 57.4 187 27.3
PGR119G0476 Punica granatum HOM05D005325 ORTHO05D008457 2.6e-06 57.4 187 27.8
arahy.Tifrunner.gnm1.ann1.CQ7B2G Arachis hypogaea HOM05D005325 ORTHO05D008457 3.3e-06 57.0 186 28.5
LjContig00155g0003403 Lotus japonicus HOM05D005325 ORTHO05D008457 3.3e-06 57.0 180 30.0
CSS0007520 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 4.4e-06 56.6 176 27.3
CSS0011737 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 4.4e-06 56.6 176 27.3
Lalb_Chr04g0252301 Lupinus albus HOM05D005325 ORTHO05D008457 4.4e-06 56.6 174 27.6
COL.COLO4_19112 Corchorus olitorius HOM05D005325 ORTHO05D008457 5.7e-06 56.2 181 25.4
ECA248G3745 Erigeron canadensis HOM05D005325 ORTHO05D008457 5.7e-06 56.2 176 26.7
Actinidia25148 Actinidia chinensis HOM05D005325 ORTHO05D008457 7.4e-06 55.8 174 27.0
Mapoly0026s0005 Marchantia polymorpha HOM05D005325 ORTHO05D008457 9.7e-06 55.5 177 27.7


User provided reference genes

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