Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0018794 Lotus japonicus HOM05D004341 ORTHO05D005075 2.2e-90 335.9 206 100.0
Lj4g0017726 Lotus japonicus HOM05D004341 ORTHO05D005075 7.1e-81 304.3 209 92.8
Ca_26283_v3 Cicer arietinum L. HOM05D004341 ORTHO05D005075 3.4e-67 258.8 206 79.1
Psat6g047640 Pisum sativum HOM05D004341 ORTHO05D005075 1.7e-66 256.5 206 73.3
Medtr1g047200 Medicago truncatula HOM05D004341 ORTHO05D005075 7.4e-62 241.1 207 75.8
Phvul.010G058500 Phaseolus vulgaris HOM05D004341 ORTHO05D005075 4.5e-59 231.9 207 76.8
VMungo0331G0448 Vigna mungo HOM05D004341 ORTHO05D005075 4.5e-59 231.9 205 77.1
Glyma.03G001900 Glycine max HOM05D004341 ORTHO05D005075 3.8e-58 228.8 206 77.2
Lalb_Chr06g0163081 Lupinus albus HOM05D004341 ORTHO05D005075 6.5e-58 228.0 223 71.7
arahy.Tifrunner.gnm1.ann1.W1Y39Q Arachis hypogaea HOM05D004341 ORTHO05D005075 7.2e-57 224.6 235 68.5
arahy.Tifrunner.gnm1.ann1.22GDSE Arachis hypogaea HOM05D004341 ORTHO05D005075 5.2e-55 218.4 238 67.6
arahy.Tifrunner.gnm1.ann1.VCV969 Arachis hypogaea HOM05D004341 ORTHO05D005075 5.2e-55 218.4 238 67.6
AUR62002184 Chenopodium quinoa HOM05D004341 ORTHO05D005075 8.8e-55 217.6 220 65.0
Hma1.2p1_0701F.1_g205915 Hydrangea macrophylla HOM05D004341 ORTHO05D005075 2.0e-54 216.5 222 65.8
Dinv17497 Davidia involucrata HOM05D004341 ORTHO05D005075 4.4e-54 215.3 221 71.0
QL11p010678 Quercus lobata HOM05D004341 ORTHO05D005075 7.4e-54 214.5 126 88.1
Cc09_g04540 Coffea canephora HOM05D004341 ORTHO05D005075 9.7e-54 214.2 214 63.1
Ah.07g207810 Amaranthus hybridus HOM05D004341 ORTHO05D005075 1.3e-53 213.8 219 64.4
MBI06_g30999_MAGBIO Magnolia biondii HOM05D004341 ORTHO05D005075 1.3e-53 213.8 209 70.8
SalBow5G0282 Salvia bowleyana HOM05D004341 ORTHO05D005075 1.7e-53 213.4 209 61.7
ClCG00G000170 Citrullus lanatus HOM05D004341 ORTHO05D005075 3.7e-53 212.2 221 68.8
ClCG10G003420 Citrullus lanatus HOM05D004341 ORTHO05D005075 3.7e-53 212.2 221 68.8
PGR083G1473 Punica granatum HOM05D004341 ORTHO05D005075 3.7e-53 212.2 212 67.5
CiPaw.10G108700 Carya illinoinensis HOM05D004341 ORTHO05D005075 6.3e-53 211.5 127 86.6
MELO3C014011.2 Cucumis melo HOM05D004341 ORTHO05D005075 8.2e-53 211.1 225 62.7
AUR62015527 Chenopodium quinoa HOM05D004341 ORTHO05D005075 1.1e-52 210.7 216 63.0
TAR626G1254 Trochodendron aralioides HOM05D004341 ORTHO05D005075 1.4e-52 210.3 222 66.7
HanXRQChr12g0384191 Helianthus annuus HOM05D004341 ORTHO05D005075 1.8e-52 209.9 217 64.1
CSS0011539 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 2.4e-52 209.5 227 59.9
Nn1g09858 Nelumbo nucifera HOM05D004341 ORTHO05D005075 2.4e-52 209.5 214 69.6
Hund04610 Selenicereus undatus HOM05D004341 ORTHO05D005075 2.4e-52 209.5 223 59.6
GSVIVG01038073001 Vitis vinifera HOM05D004341 ORTHO05D005075 2.4e-52 209.5 213 70.9
CAN.G1144.22 Capsicum annuum HOM05D004341 ORTHO05D005075 3.1e-52 209.1 215 59.5
CDE04G3252 Ceratophyllum demersum HOM05D004341 ORTHO05D005075 4.1e-52 208.8 206 66.0
ECA234G2847 Erigeron canadensis HOM05D004341 ORTHO05D005075 4.1e-52 208.8 217 64.5
Lsat_1_v5_gn_4_45480 Lactuca sativa HOM05D004341 ORTHO05D005075 4.1e-52 208.8 217 61.8
EL10Ac3g05823 Beta vulgaris HOM05D004341 ORTHO05D005075 7.0e-52 208.0 221 63.3
Cfa001170 Carpinus fangiana HOM05D004341 ORTHO05D005075 7.0e-52 208.0 126 85.7
Manes.16G060700 Manihot esculenta HOM05D004341 ORTHO05D005075 7.0e-52 208.0 215 62.8
Sed0011196 Sechium edule HOM05D004341 ORTHO05D005075 7.0e-52 208.0 226 66.8
Oeu020261.1 Olea europaea HOM05D004341 ORTHO05D005075 1.2e-51 207.2 212 63.7
TPR.G20753 Trifolium pratense HOM05D004341 ORTHO05D005075 2.0e-51 206.5 213 70.0
Lj1A1153T31 Lonicera japonica HOM05D004341 ORTHO05D005075 2.6e-51 206.1 212 68.9
CSS0011039 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 3.5e-51 205.7 220 62.7
HPP92_006338 Vanilla planifolia HOM05D004341 ORTHO05D005075 5.9e-51 204.9 204 71.1
Potri.001G073500 Populus trichocarpa HOM05D004341 ORTHO05D005075 1.0e-50 204.1 224 61.2
Cpa.g.c30482 Carica papaya HOM05D004341 ORTHO05D005075 1.3e-50 203.8 215 60.9
Nitab4.5_0000422g0150 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.7e-50 203.4 209 63.2
Dinv05280 Davidia involucrata HOM05D004341 ORTHO05D005075 2.2e-50 203.0 222 69.8
Prupe.4G121600 Prunus persica HOM05D004341 ORTHO05D005075 2.2e-50 203.0 127 83.5
Aa31LG9G8550 Aethionema arabicum HOM05D004341 ORTHO05D005075 2.9e-50 202.6 212 61.8
Solyc05g010570.3 Solanum lycopersicum HOM05D004341 ORTHO05D005075 2.9e-50 202.6 212 66.5
Sopen05g006350 Solanum pennellii HOM05D004341 ORTHO05D005075 2.9e-50 202.6 212 66.5
Lsat_1_v5_gn_3_129240 Lactuca sativa HOM05D004341 ORTHO05D005075 6.5e-50 201.4 212 62.7
Nitab4.5_0012569g0030 Nicotiana tabacum HOM05D004341 ORTHO05D005075 6.5e-50 201.4 212 64.2
MD10G1223700 Malus domestica HOM05D004341 ORTHO05D005075 8.5e-50 201.1 224 67.9
Nitab4.5_0000414g0070 Nicotiana tabacum HOM05D004341 ORTHO05D005075 8.5e-50 201.1 212 62.3
Oeu062532.1 Olea europaea HOM05D004341 ORTHO05D005075 1.1e-49 200.7 210 62.4
Aqoxy4G00695 Aquilegia oxysepala HOM05D004341 ORTHO05D005075 1.5e-49 200.3 125 81.6
THA.LOC104806232 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 2.5e-49 199.5 210 62.9
TWI15G0268 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 2.5e-49 199.5 216 61.1
Ciclev10016661m.g Citrus clementina HOM05D004341 ORTHO05D005075 4.2e-49 198.7 211 55.5
FvH4_3g13420 Fragaria vesca HOM05D004341 ORTHO05D005075 4.2e-49 198.7 127 81.1
CANSAT78G0611 Cannabis sativa HOM05D004341 ORTHO05D005075 5.5e-49 198.4 122 83.6
FAN16G0631 Fragaria x ananassa HOM05D004341 ORTHO05D005075 5.5e-49 198.4 126 81.0
HanXRQChr13g0422931 Helianthus annuus HOM05D004341 ORTHO05D005075 9.4e-49 197.6 209 62.2
Peaxi162Scf00119g01515 Petunia axillaris HOM05D004341 ORTHO05D005075 9.4e-49 197.6 209 61.2
RcHm_v2.0_Chr5g0022151 Rosa chinensis HOM05D004341 ORTHO05D005075 9.4e-49 197.6 235 63.8
PSO017G7392 Papaver somniferum HOM05D004341 ORTHO05D005075 1.2e-48 197.2 127 79.5
SGA_v2.0_scaffold28G11752 Striga asiatica HOM05D004341 ORTHO05D005075 1.2e-48 197.2 209 57.9
Lj7A164T18 Lonicera japonica HOM05D004341 ORTHO05D005075 1.6e-48 196.8 216 67.6
Duzib150G1434 Durio zibethinus HOM05D004341 ORTHO05D005075 2.1e-48 196.4 231 63.6
PGSC0003DMG400019653 Solanum tuberosum HOM05D004341 ORTHO05D005075 2.1e-48 196.4 212 65.6
Os01g0680400 Oryza sativa ssp. japonica HOM05D004341 ORTHO05D005075 2.7e-48 196.1 211 65.9
MSTRG.22399 Avicennia marina HOM05D004341 ORTHO05D005075 3.6e-48 195.7 209 59.8
CAN.G359.8 Capsicum annuum HOM05D004341 ORTHO05D005075 3.6e-48 195.7 212 57.5
Gohir.A10G168600 Gossypium hirsutum HOM05D004341 ORTHO05D005075 4.7e-48 195.3 229 54.1
Rhsim13G0136700 Rhododendron simsii HOM05D004341 ORTHO05D005075 1.0e-47 194.1 126 82.5
Solyc05g018120.2 Solanum lycopersicum HOM05D004341 ORTHO05D005075 1.0e-47 194.1 126 77.0
Gohir.D13G218100 Gossypium hirsutum HOM05D004341 ORTHO05D005075 2.3e-47 193.0 229 56.3
Gorai.013G248900 Gossypium raimondii HOM05D004341 ORTHO05D005075 2.3e-47 193.0 229 56.3
FAN21G2305 Fragaria x ananassa HOM05D004341 ORTHO05D005075 5.2e-47 191.8 229 62.4
Gohir.A13G214400 Gossypium hirsutum HOM05D004341 ORTHO05D005075 6.7e-47 191.4 229 58.1
Gorai.011G195600 Gossypium raimondii HOM05D004341 ORTHO05D005075 6.7e-47 191.4 229 56.3
PSO210G4911 Papaver somniferum HOM05D004341 ORTHO05D005075 6.7e-47 191.4 124 79.0
ATR0737G165 Amborella trichopoda HOM05D004341 ORTHO05D005075 8.8e-47 191.0 208 61.5
unitig_21.g20916 Utricularia gibba HOM05D004341 ORTHO05D005075 8.8e-47 191.0 216 57.9
vmacro03576 Vaccinium macrocarpon HOM05D004341 ORTHO05D005075 8.8e-47 191.0 255 59.6
Zm00001eb156710 Zea mays HOM05D004341 ORTHO05D005075 8.8e-47 191.0 205 65.9
Gohir.D10G174800 Gossypium hirsutum HOM05D004341 ORTHO05D005075 2.0e-46 189.9 229 56.3
Thecc.09G217200 Theobroma cacao HOM05D004341 ORTHO05D005075 2.0e-46 189.9 226 60.2
Zm00001eb360430 Zea mays HOM05D004341 ORTHO05D005075 2.0e-46 189.9 206 65.5
Hund11810 Selenicereus undatus HOM05D004341 ORTHO05D005075 4.4e-46 188.7 242 52.1
BcaNung03718 Brassica carinata HOM05D004341 ORTHO05D005075 5.7e-46 188.3 127 74.8
BcaC09g51324 Brassica carinata HOM05D004341 ORTHO05D005075 2.2e-45 186.4 127 74.0
AT4G20280 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 6.3e-45 184.9 213 59.2
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 8.2e-45 184.5 204 60.3
Haze_05182 Corylus avellana HOM05D004341 ORTHO05D005075 1.8e-44 183.3 246 59.8
AL7G33620 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 4.1e-44 182.2 216 57.9
BolC1t01390H Brassica oleracea HOM05D004341 ORTHO05D005075 4.1e-44 182.2 125 72.8
BraA01t01141Z Brassica rapa HOM05D004341 ORTHO05D005075 4.1e-44 182.2 125 72.8
Thhalv10026240m.g Eutrema salsugineum HOM05D004341 ORTHO05D005075 4.1e-44 182.2 211 56.9
SHI16737 Sapria himalayana HOM05D004341 ORTHO05D005075 4.1e-44 182.2 202 60.4
A01p11990 Brassica napus HOM05D004341 ORTHO05D005075 5.3e-44 181.8 125 72.0
C01p14250 Brassica napus HOM05D004341 ORTHO05D005075 1.2e-43 180.6 125 72.0
CARHR227110 Cardamine hirsuta HOM05D004341 ORTHO05D005075 1.2e-43 180.6 211 57.3
Sp7g18640 Schrenkiella parvula HOM05D004341 ORTHO05D005075 1.2e-43 180.6 215 58.1
Peaxi162Scf00188g00814 Petunia axillaris HOM05D004341 ORTHO05D005075 1.6e-43 180.3 192 59.9
HPP92_027866 Vanilla planifolia HOM05D004341 ORTHO05D005075 2.0e-43 179.9 188 69.7
Carub.0007s2089 Capsella rubella HOM05D004341 ORTHO05D005075 3.5e-43 179.1 210 58.6
DCAR_007769 Daucus carota HOM05D004341 ORTHO05D005075 1.9e-41 173.3 202 52.5
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 2.5e-41 172.9 119 78.2
Sc19g0001970 Simmondsia chinensis HOM05D004341 ORTHO05D005075 9.4e-41 171.0 106 83.0
AT1G20000 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 3.4e-38 162.5 209 52.2
COL.COLO4_10402 Corchorus olitorius HOM05D004341 ORTHO05D005075 9.8e-38 161.0 215 49.8
AL1G32730 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 2.8e-37 159.5 125 68.8
TPR.G30192 Trifolium pratense HOM05D004341 ORTHO05D005075 6.3e-37 158.3 206 51.9
Eucgr.G01564 Eucalyptus grandis HOM05D004341 ORTHO05D005075 1.1e-36 157.5 95 82.1
Medtr0085s0030 Medicago truncatula HOM05D004341 ORTHO05D005075 1.1e-36 157.5 164 68.3
QL08p059659 Quercus lobata HOM05D004341 ORTHO05D005075 1.8e-36 156.8 215 48.8
THA.LOC104812926 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 1.6e-35 153.7 211 55.0
CiPaw.02G184500 Carya illinoinensis HOM05D004341 ORTHO05D005075 2.3e-34 149.8 125 60.0
A08p14740 Brassica napus HOM05D004341 ORTHO05D005075 6.5e-34 148.3 190 48.9
BraA08t33460Z Brassica rapa HOM05D004341 ORTHO05D005075 6.5e-34 148.3 190 48.9
Pp3c14_26520 Physcomitrium patens HOM05D004341 ORTHO05D005075 1.1e-33 147.5 127 63.8
arahy.Tifrunner.gnm1.ann1.ZMN623 Arachis hypogaea HOM05D004341 ORTHO05D005075 3.3e-33 146.0 194 62.9
BcaB04g18416 Brassica carinata HOM05D004341 ORTHO05D005075 5.5e-33 145.2 127 63.8
CBR_g22400 Chara braunii HOM05D004341 ORTHO05D005075 1.2e-32 144.1 126 58.7
FAN07G2754 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.6e-32 143.7 109 71.6
FAN25G3107 Fragaria x ananassa HOM05D004341 ORTHO05D005075 2.8e-32 142.9 98 76.5
Actinidia34783 Actinidia chinensis HOM05D004341 ORTHO05D005075 3.6e-32 142.5 191 54.5
Lsat_1_v5_gn_1_77761 Lactuca sativa HOM05D004341 ORTHO05D005075 4.7e-32 142.1 101 74.3
BcaB04g20259 Brassica carinata HOM05D004341 ORTHO05D005075 1.8e-31 140.2 131 59.5
BcaC09g49417 Brassica carinata HOM05D004341 ORTHO05D005075 2.3e-31 139.8 133 57.9
BcaB04g20244 Brassica carinata HOM05D004341 ORTHO05D005075 1.2e-30 137.5 212 48.1
BolC1t03652H Brassica oleracea HOM05D004341 ORTHO05D005075 2.0e-30 136.7 212 44.3
Mapoly0006s0068 Marchantia polymorpha HOM05D004341 ORTHO05D005075 3.4e-30 136.0 108 64.8
Nitab4.5_0015757g0010 Nicotiana tabacum HOM05D004341 ORTHO05D005075 3.4e-30 136.0 168 59.5
Sabra01G0051800 Salix brachista HOM05D004341 ORTHO05D005075 9.2e-28 127.9 84 77.4
BcaB03g11664 Brassica carinata HOM05D004341 ORTHO05D005075 1.6e-27 127.1 219 50.7
Lsat_1_v5_gn_1_1241 Lactuca sativa HOM05D004341 ORTHO05D005075 3.5e-27 125.9 174 54.0
BcaC01g00664 Brassica carinata HOM05D004341 ORTHO05D005075 1.1e-25 120.9 211 46.0
SMO115G0310 Selaginella moellendorffii HOM05D004341 ORTHO05D005075 1.1e-25 120.9 103 58.3
FAN11G3831 Fragaria x ananassa HOM05D004341 ORTHO05D005075 8.9e-23 111.3 82 72.0
Haze_17072 Corylus avellana HOM05D000046 ORTHO05D005075 2.2e-21 106.7 228 43.9
BcaB04g20257 Brassica carinata HOM05D004341 ORTHO05D005075 1.3e-18 97.4 79 65.8
CsaV3_3G003450 Cucumis sativus L. HOM05D004341 ORTHO05D005075 4.3e-17 92.4 150 52.7
Nitab4.5_0015757g0020 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.1e-15 87.8 135 52.6
Cfa001469 Carpinus fangiana HOM05D001719 ORTHO05D007646 1.4e-15 87.4 74 59.5
Oeu020262.1 Olea europaea HOM05D004341 ORTHO05D005075 1.8e-15 87.0 137 51.8
Potri.003G157450 Populus trichocarpa HOM05D004341 ORTHO05D005075 3.4e-14 82.8 48 83.3
BolC3t20569H Brassica oleracea HOM05D001435 ORTHO05D001304 1.2e-11 74.3 65 56.9
PRCOL_00001421 Prasinoderma coloniale HOM05D004341 ORTHO05D005075 1.2e-11 74.3 114 39.5
TPR.G20312 Trifolium pratense HOM05D004341 ORTHO05D005075 3.5e-11 72.8 41 78.0
TPR.G36214 Trifolium pratense HOM05D004341 ORTHO05D005075 3.0e-10 69.7 37 83.8
Cre01.g011350 Chlamydomonas reinhardtii HOM05D004341 ORTHO05D005075 2.8e-08 63.2 98 34.7
MCO01G288 Micromonas commoda HOM05D004341 ORTHO05D005075 6.2e-08 62.0 94 42.6
arahy.Tifrunner.gnm1.ann1.W2JFNW Arachis hypogaea HOM05D004341 ORTHO05D005075 3.1e-07 59.7 34 79.4
SEGI_17825 Sequoiadendron giganteum HOM05D004341 ORTHO05D005075 2.0e-06 57.0 146 44.5
BcaB03g11666 Brassica carinata HOM05D004341 ORTHO05D005075 7.5e-06 55.1 46 58.7


User provided reference genes

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