Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0017854 Lotus japonicus HOM05D005156 ORTHO05D006710 1.8e-185 652.5 343 100.0
Lalb_Chr10g0094741 Lupinus albus HOM05D005156 ORTHO05D006710 7.3e-155 550.8 339 85.0
TPR.G34160 Trifolium pratense HOM05D005156 ORTHO05D006710 2.1e-154 549.3 342 84.5
Glyma.09G002700 Glycine max HOM05D005156 ORTHO05D006710 1.4e-153 546.6 342 84.2
Psat7g227760 Pisum sativum HOM05D005156 ORTHO05D006710 5.4e-150 534.6 342 81.6
Phvul.011G080400 Phaseolus vulgaris HOM05D005156 ORTHO05D006710 1.1e-147 526.9 341 81.2
Cfa009832 Carpinus fangiana HOM05D005156 ORTHO05D006710 1.5e-147 526.6 339 82.0
VMungo1383G1089 Vigna mungo HOM05D005156 ORTHO05D006710 4.0e-145 518.5 349 78.2
Hma1.2p1_1115F.1_g258845 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 2.6e-144 515.8 338 79.9
CiPaw.13G153000 Carya illinoinensis HOM05D005156 ORTHO05D006710 2.2e-143 512.7 337 79.2
RcHm_v2.0_Chr5g0050911 Rosa chinensis HOM05D005156 ORTHO05D006710 1.9e-142 509.6 336 79.2
arahy.Tifrunner.gnm1.ann1.KCM926 Arachis hypogaea HOM05D005156 ORTHO05D006710 4.2e-142 508.4 341 81.2
CSS0001612 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 5.4e-142 508.1 342 78.7
Atru.chr3.2617 Acer truncatum HOM05D005156 ORTHO05D006710 9.2e-142 507.3 338 78.7
Ca_12758_v3 Cicer arietinum L. HOM05D005156 ORTHO05D006710 1.2e-141 506.9 369 76.7
TAR626G1548 Trochodendron aralioides HOM05D005156 ORTHO05D006710 1.2e-141 506.9 342 77.5
arahy.Tifrunner.gnm1.ann1.9TL5ZW Arachis hypogaea HOM05D005156 ORTHO05D006710 2.7e-141 505.8 341 80.9
CSS0030488 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 2.7e-141 505.8 338 79.0
Actinidia16358 Actinidia chinensis HOM05D005156 ORTHO05D006710 3.5e-141 505.4 342 77.2
Potri.001G254000 Populus trichocarpa HOM05D005156 ORTHO05D006710 4.6e-141 505.0 340 79.4
CsaV3_1G043140 Cucumis sativus L. HOM05D005156 ORTHO05D006710 5.1e-140 501.5 337 77.7
FAN16G2156 Fragaria x ananassa HOM05D005156 ORTHO05D006710 5.1e-140 501.5 336 77.7
MD11G1196200 Malus domestica HOM05D005156 ORTHO05D006710 6.6e-140 501.1 340 76.8
FvH4_3g28170 Fragaria vesca HOM05D005156 ORTHO05D006710 8.7e-140 500.7 336 78.6
GSVIVG01037376001 Vitis vinifera HOM05D005156 ORTHO05D006710 1.9e-139 499.6 339 77.9
Eucgr.J00726 Eucalyptus grandis HOM05D005156 ORTHO05D006710 5.6e-139 498.0 337 76.6
MSTRG.18451 Avicennia marina HOM05D005156 ORTHO05D006710 7.3e-139 497.7 340 75.3
Prupe.4G258300 Prunus persica HOM05D005156 ORTHO05D006710 9.6e-139 497.3 340 75.9
Aqoxy8s002 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 1.6e-138 496.5 338 77.2
Haze_23195 Corylus avellana HOM05D005156 ORTHO05D006710 3.6e-138 495.4 345 78.0
QL01p017825 Quercus lobata HOM05D005156 ORTHO05D006710 8.1e-138 494.2 342 76.0
Cpa.g.sc84.13 Carica papaya HOM05D005156 ORTHO05D006710 2.4e-137 492.7 338 77.5
Ciclev10015838m.g Citrus clementina HOM05D005156 ORTHO05D006710 4.0e-137 491.9 333 76.9
PSO210G1653 Papaver somniferum HOM05D005156 ORTHO05D006710 4.0e-137 491.9 335 76.7
Sc16g0011170 Simmondsia chinensis HOM05D005156 ORTHO05D006710 4.4e-136 488.4 342 75.1
Thecc.09G243300 Theobroma cacao HOM05D005156 ORTHO05D006710 5.8e-136 488.0 331 78.2
CANSAT54G2883 Cannabis sativa HOM05D005156 ORTHO05D006710 7.6e-136 487.6 336 77.1
PSO210G0499 Papaver somniferum HOM05D005156 ORTHO05D006710 1.7e-135 486.5 335 76.1
Oeu001490.1 Olea europaea HOM05D005156 ORTHO05D006710 2.9e-135 485.7 340 75.6
Gorai.001G136000 Gossypium raimondii HOM05D005156 ORTHO05D006710 1.9e-134 483.0 334 75.1
Migut.D00644 Erythranthe guttata HOM05D005156 ORTHO05D006710 2.4e-134 482.6 340 75.6
Gohir.A07G121700 Gossypium hirsutum HOM05D005156 ORTHO05D006710 7.1e-134 481.1 334 75.4
Gohir.D07G126000 Gossypium hirsutum HOM05D005156 ORTHO05D006710 7.1e-134 481.1 334 74.9
MELO3C015153.2 Cucumis melo HOM05D005156 ORTHO05D006710 3.5e-133 478.8 320 78.1
AUR62000172 Chenopodium quinoa HOM05D005156 ORTHO05D006710 1.5e-131 473.4 337 73.0
THA.LOC104804468 Tarenaya hassleriana HOM05D005156 ORTHO05D006710 1.5e-131 473.4 335 74.6
PGR119G1881 Punica granatum HOM05D005156 ORTHO05D006710 1.3e-130 470.3 337 72.4
Ah.06g194400 Amaranthus hybridus HOM05D005156 ORTHO05D006710 2.8e-130 469.2 337 72.1
EL10Ac4g10175 Beta vulgaris HOM05D005156 ORTHO05D006710 3.1e-129 465.7 337 72.4
Nitab4.5_0006419g0030 Nicotiana tabacum HOM05D005156 ORTHO05D006710 3.1e-129 465.7 344 72.4
ECA238G2265 Erigeron canadensis HOM05D005156 ORTHO05D006710 6.9e-129 464.5 339 70.8
FAN21G2369 Fragaria x ananassa HOM05D005156 ORTHO05D006710 6.9e-129 464.5 336 73.2
Manes.15G112800 Manihot esculenta HOM05D005156 ORTHO05D006710 6.9e-129 464.5 274 86.9
Sed0002302 Sechium edule HOM05D005156 ORTHO05D006710 2.0e-128 463.0 337 74.8
PGSC0003DMG400019760 Solanum tuberosum HOM05D005156 ORTHO05D006710 4.5e-128 461.8 336 73.5
FAN11G0102 Fragaria x ananassa HOM05D005156 ORTHO05D006710 5.8e-128 461.5 336 73.8
Cc01_g05890 Coffea canephora HOM05D005156 ORTHO05D006710 2.2e-127 459.5 318 76.4
FAN25G0057 Fragaria x ananassa HOM05D005156 ORTHO05D006710 2.2e-127 459.5 340 71.5
Solyc11g033260.2 Solanum lycopersicum HOM05D005156 ORTHO05D006710 2.9e-127 459.1 337 72.4
AL1G58170 Arabidopsis lyrata HOM05D005156 ORTHO05D006710 4.9e-127 458.4 334 72.5
BcaB02g11155 Brassica carinata HOM05D005156 ORTHO05D006710 4.9e-127 458.4 332 72.6
BcaC05g27410 Brassica carinata HOM05D005156 ORTHO05D006710 4.9e-127 458.4 334 72.5
Sopen11g015730 Solanum pennellii HOM05D005156 ORTHO05D006710 8.4e-127 457.6 339 72.6
Rhsim13G0216600 Rhododendron simsii HOM05D005156 ORTHO05D006710 3.2e-126 455.7 360 70.3
ATR0751G133 Amborella trichopoda HOM05D005156 ORTHO05D006710 4.2e-126 455.3 309 76.7
A05p20090 Brassica napus HOM05D005156 ORTHO05D006710 5.4e-126 454.9 336 72.3
BraA05t20917Z Brassica rapa HOM05D005156 ORTHO05D006710 5.4e-126 454.9 336 72.3
Carub.0001s3958 Capsella rubella HOM05D005156 ORTHO05D006710 5.4e-126 454.9 334 71.9
Thhalv10011639m.g Eutrema salsugineum HOM05D005156 ORTHO05D006710 5.4e-126 454.9 334 71.6
CARHR040540 Cardamine hirsuta HOM05D005156 ORTHO05D006710 9.3e-126 454.1 334 71.9
AT1G50510 Arabidopsis thaliana HOM05D005156 ORTHO05D006710 1.2e-125 453.8 334 71.6
AUR62039839 Chenopodium quinoa HOM05D005156 ORTHO05D006710 1.6e-125 453.4 367 66.8
ClCG03G012920 Citrullus lanatus HOM05D005156 ORTHO05D006710 2.7e-125 452.6 358 69.6
CAN.G1323.2 Capsicum annuum HOM05D005156 ORTHO05D006710 4.6e-125 451.8 337 71.5
BcaB07g33488 Brassica carinata HOM05D005156 ORTHO05D006710 6.0e-125 451.4 334 71.6
C05p33580 Brassica napus HOM05D005156 ORTHO05D006710 1.8e-124 449.9 336 71.4
BcaC08g43222 Brassica carinata HOM05D005156 ORTHO05D006710 2.3e-124 449.5 334 70.7
Peaxi162Scf00473g00218 Petunia axillaris HOM05D005156 ORTHO05D006710 3.9e-124 448.7 370 67.6
BraA06t23519Z Brassica rapa HOM05D005156 ORTHO05D006710 5.1e-124 448.4 336 71.1
unitig_90.g27461 Utricularia gibba HOM05D005156 ORTHO05D006710 1.5e-123 446.8 339 70.5
HPP92_001936 Vanilla planifolia HOM05D005156 ORTHO05D006710 1.6e-122 443.4 300 76.0
Sabra16G0154700 Salix brachista HOM05D005156 ORTHO05D006710 2.1e-122 443.0 319 76.5
Hund21990 Selenicereus undatus HOM05D005156 ORTHO05D006710 6.2e-122 441.4 348 69.0
Sp1g37360 Schrenkiella parvula HOM05D005156 ORTHO05D006710 8.1e-122 441.0 334 70.7
vmacro04002 Vaccinium macrocarpon HOM05D005156 ORTHO05D006710 1.5e-120 436.8 413 61.5
HanXRQChr06g0183211 Helianthus annuus HOM05D005156 ORTHO05D006710 2.9e-119 432.6 312 71.5
Lsat_1_v5_gn_2_29420 Lactuca sativa HOM05D005156 ORTHO05D006710 8.4e-119 431.0 345 66.4
BolC5t32085H Brassica oleracea HOM05D005156 ORTHO05D006710 1.6e-117 426.8 370 64.1
A06p03060 Brassica napus HOM05D005156 ORTHO05D006710 8.7e-116 421.0 314 71.3
Nitab4.5_0002113g0190 Nicotiana tabacum HOM05D005156 ORTHO05D006710 3.3e-115 419.1 276 78.3
C06p05700 Brassica napus HOM05D005156 ORTHO05D006710 1.3e-114 417.2 312 70.8
SMO147G0151 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 1.4e-113 413.7 300 72.7
Mapoly0048s0046 Marchantia polymorpha HOM05D005156 ORTHO05D006710 3.1e-113 412.5 330 65.8
Os08g0504400 Oryza sativa ssp. japonica HOM05D005156 ORTHO05D006710 7.6e-112 407.9 285 75.1
Aa31LG10G3780 Aethionema arabicum HOM05D005156 ORTHO05D006710 8.4e-111 404.4 302 70.9
Dinv22149 Davidia involucrata HOM05D005156 ORTHO05D006710 2.1e-109 399.8 247 83.0
Lj2C655T2 Lonicera japonica HOM05D005156 ORTHO05D006710 3.5e-109 399.1 302 71.9
CDE12G0606 Ceratophyllum demersum HOM05D005156 ORTHO05D006710 5.1e-108 395.2 266 76.7
Aqoxy4G00402 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 1.5e-107 393.7 338 65.7
Pp3c21_8650 Physcomitrium patens HOM05D005156 ORTHO05D006710 4.3e-107 392.1 341 62.8
CBR_g12801 Chara braunii HOM05D005156 ORTHO05D006710 6.9e-105 384.8 303 67.0
DCAR_002091 Daucus carota HOM05D005156 ORTHO05D006710 3.4e-104 382.5 305 68.5
AagrBONN_evm.TU.Sc2ySwM_368.760 Anthoceros agrestis HOM05D005156 ORTHO05D006710 6.5e-103 378.3 302 66.9
Medtr4g031220 Medicago truncatula HOM05D005156 ORTHO05D006710 7.2e-102 374.8 232 85.3
Zm00001eb251060 Zea mays HOM05D005156 ORTHO05D006710 7.9e-101 371.3 250 74.4
SHI21395 Sapria himalayana HOM05D005156 ORTHO05D006710 1.0e-100 370.9 274 72.3
MCO15G168 Micromonas commoda HOM05D005156 ORTHO05D006710 2.8e-98 362.8 349 57.3
SGA_v2.0_scaffold29G12276 Striga asiatica HOM05D005156 ORTHO05D006710 4.5e-96 355.5 223 83.4
Hma1.2p1_2309F.1_g319520 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 1.0e-92 344.4 210 83.8
Lj2C684T3 Lonicera japonica HOM05D005156 ORTHO05D006710 1.3e-90 337.4 237 77.2
PRCOL_00003626 Prasinoderma coloniale HOM05D005156 ORTHO05D006710 6.3e-90 335.1 319 56.4
MBI15_g27827_MAGBIO Magnolia biondii HOM05D005156 ORTHO05D006710 9.4e-86 321.2 209 81.8
Cre02.g144000 Chlamydomonas reinhardtii HOM05D005156 ORTHO05D006710 2.7e-85 319.7 274 61.7
SMO273G0012 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 3.0e-76 289.7 206 73.3
Nn1g08054 Nelumbo nucifera HOM05D005156 ORTHO05D006710 2.2e-71 273.5 169 81.7
BcaB02g11038 Brassica carinata HOM05D005156 ORTHO05D006710 1.9e-70 270.4 203 71.9
BcaB01g01392 Brassica carinata HOM05D005156 ORTHO05D006710 2.7e-64 250.0 203 69.0
Cfa025164 Carpinus fangiana HOM05D005156 ORTHO05D006710 3.6e-61 239.6 306 43.1
Nn1g08053 Nelumbo nucifera HOM05D005156 ORTHO05D006710 2.6e-51 206.8 153 73.2
Haze_26247 Corylus avellana HOM05D005156 ORTHO05D006710 1.1e-44 184.9 277 42.2
COL.COLO4_04116 Corchorus olitorius HOM05D005156 ORTHO05D006710 4.4e-43 179.5 145 69.7
Medtr4g031235 Medicago truncatula HOM05D005156 ORTHO05D006710 4.3e-38 162.9 103 80.6
SMO147G0118 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 3.1e-28 130.2 246 40.2
Aqoxy1G04277 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 1.5e-27 127.9 104 68.3
EL10Ac8g19800 Beta vulgaris HOM05D005156 ORTHO05D006710 5.8e-27 125.9 111 58.6
ATR0585G005 Amborella trichopoda HOM05D005156 ORTHO05D006710 6.4e-26 122.5 94 69.1
Oeu016690.1 Olea europaea HOM05D005156 ORTHO05D006710 2.1e-24 117.5 99 63.6
SalBow6G0988 Salvia bowleyana HOM05D005156 ORTHO05D006710 8.7e-23 112.1 79 70.9
SMO164G0249 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 4.8e-21 106.3 118 55.9
EL10Ac2g04378 Beta vulgaris HOM05D005156 ORTHO05D006710 6.9e-20 102.4 92 52.2
MELO3C033715.2 Cucumis melo HOM05D005156 ORTHO05D006710 6.9e-20 102.4 61 82.0
MELO3C034160.2 Cucumis melo HOM05D005156 ORTHO05D006710 6.9e-20 102.4 62 82.3
EL10Ac3g06833 Beta vulgaris HOM05D005156 ORTHO05D006710 9.0e-20 102.1 89 52.8
MELO3C030656.2 Cucumis melo HOM05D005156 ORTHO05D006710 1.2e-19 101.7 62 83.9
MELO3C034654.2 Cucumis melo HOM05D005156 ORTHO05D006710 2.6e-19 100.5 62 83.9
SMO147G0310 Selaginella moellendorffii HOM05D000066 ORTHO05D373802 4.9e-18 96.3 88 59.1
SEGI_37101 Sequoiadendron giganteum HOM05D005156 ORTHO05D006710 3.2e-17 93.6 67 70.1
MELO3C030457.2 Cucumis melo HOM05D005156 ORTHO05D006710 2.1e-16 90.9 56 83.9
MELO3C016526.2 Cucumis melo HOM05D005156 ORTHO05D006710 2.7e-16 90.5 55 85.5
EL10Ac2g02892 Beta vulgaris HOM05D005156 ORTHO05D039042 1.2e-11 75.1 45 73.3
EL10As2g23197 Beta vulgaris HOM05D005156 ORTHO05D039042 9.9e-11 72.0 43 74.4
Hma1.2p1_1115F.1_g258870 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 1.7e-10 71.2 37 83.8
EL10Ac8g20129 Beta vulgaris HOM05D005156 ORTHO05D000004 2.2e-10 70.9 89 46.1
EL10Ac9g22728 Beta vulgaris HOM05D005156 ORTHO05D000004 1.1e-09 68.6 35 88.6
Rhsim05G0077000 Rhododendron simsii HOM05D003003 ORTHO05D008343 8.7e-07 58.9 39 76.9
SMO147G0023 Selaginella moellendorffii HOM05D005156 ORTHO05D376049 8.7e-07 58.9 123 37.4


User provided reference genes

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