Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0015245 Lotus japonicus HOM05D006362 ORTHO05D008295 0.0e+00 1113.2 568 100.0
TPR.G25875 Trifolium pratense HOM05D006362 ORTHO05D008295 3.5e-295 1017.7 564 91.0
Medtr4g081050 Medicago truncatula HOM05D006362 ORTHO05D008295 3.6e-292 1007.7 565 89.7
Psat7g162880 Pisum sativum HOM05D006362 ORTHO05D008295 4.4e-290 1000.7 565 89.7
Lalb_Chr03g0030071 Lupinus albus HOM05D006362 ORTHO05D008295 3.9e-286 987.6 562 88.6
Glyma.06G271800 Glycine max HOM05D006362 ORTHO05D008295 7.3e-285 983.4 563 88.8
Ca_18860_v3 Cicer arietinum L. HOM05D006362 ORTHO05D008295 9.5e-285 983.0 551 90.0
arahy.Tifrunner.gnm1.ann1.Z96I2W Arachis hypogaea HOM05D006362 ORTHO05D008295 2.0e-282 975.3 566 86.0
Phvul.011G136800 Phaseolus vulgaris HOM05D006362 ORTHO05D008295 1.2e-279 966.1 550 88.5
arahy.Tifrunner.gnm1.ann1.GJJ2CM Arachis hypogaea HOM05D006362 ORTHO05D008295 3.4e-274 948.0 566 84.1
RcHm_v2.0_Chr4g0399351 Rosa chinensis HOM05D006362 ORTHO05D008295 3.4e-258 894.8 575 79.0
QL08p012554 Quercus lobata HOM05D006362 ORTHO05D008295 2.9e-257 891.7 560 79.8
MD03G1209000 Malus domestica HOM05D006362 ORTHO05D008295 3.8e-257 891.3 560 80.7
GSVIVG01001989001 Vitis vinifera HOM05D006362 ORTHO05D008295 6.4e-257 890.6 563 79.8
Potri.011G135800 Populus trichocarpa HOM05D006362 ORTHO05D008295 4.2e-256 887.9 566 79.9
FAN12G0341 Fragaria x ananassa HOM05D006362 ORTHO05D008295 2.1e-255 885.6 575 78.8
FvH4_4g07170 Fragaria vesca HOM05D006362 ORTHO05D008295 4.6e-255 884.4 575 78.6
Atru.chr2.3247 Acer truncatum HOM05D006362 ORTHO05D008295 5.1e-254 880.9 563 78.5
Prupe.4G206200 Prunus persica HOM05D006362 ORTHO05D008295 5.1e-254 880.9 548 81.8
Thecc.07G046200 Theobroma cacao HOM05D006362 ORTHO05D008295 5.1e-254 880.9 564 78.2
FAN22G0212 Fragaria x ananassa HOM05D006362 ORTHO05D008295 4.8e-252 874.4 584 76.9
Gorai.002G084800 Gossypium raimondii HOM05D006362 ORTHO05D008295 4.0e-251 871.3 565 77.7
TAR626G1624 Trochodendron aralioides HOM05D006362 ORTHO05D008295 5.3e-251 870.9 561 78.6
Gohir.A01G076501 Gossypium hirsutum HOM05D006362 ORTHO05D008295 6.9e-251 870.5 565 77.5
Manes.15G074800 Manihot esculenta HOM05D006362 ORTHO05D008295 2.0e-250 869.0 568 78.2
CANSAT11G0353 Cannabis sativa HOM05D006362 ORTHO05D008295 9.9e-250 866.7 566 78.6
TWI38G1299 Tripterygium wilfordii HOM05D006362 ORTHO05D008295 9.9e-250 866.7 569 77.9
Cfa020397 Carpinus fangiana HOM05D006362 ORTHO05D008295 2.9e-249 865.1 551 79.5
Dinv40729 Davidia involucrata HOM05D006362 ORTHO05D008295 3.8e-249 864.8 563 77.8
Duzib268G0905 Durio zibethinus HOM05D006362 ORTHO05D008295 4.2e-248 861.3 565 76.6
Ciclev10007871m.g Citrus clementina HOM05D006362 ORTHO05D008295 1.6e-247 859.4 563 77.4
Eucgr.F03442 Eucalyptus grandis HOM05D006362 ORTHO05D008295 1.6e-247 859.4 559 77.6
Hma1.2p1_1344F.1_g277040 Hydrangea macrophylla HOM05D006362 ORTHO05D008295 4.6e-247 857.8 558 78.1
CsaV3_1G044730 Cucumis sativus L. HOM05D006362 ORTHO05D008295 6.0e-247 857.4 563 76.4
MELO3C018085.2 Cucumis melo HOM05D006362 ORTHO05D008295 1.3e-246 856.3 563 76.0
Gohir.D01G064000 Gossypium hirsutum HOM05D006362 ORTHO05D008295 2.5e-245 852.0 567 76.2
Sed0025840 Sechium edule HOM05D006362 ORTHO05D008295 6.2e-244 847.4 563 74.8
Haze_09637 Corylus avellana HOM05D006362 ORTHO05D008295 6.9e-243 844.0 627 71.0
THA.LOC104818092 Tarenaya hassleriana HOM05D006362 ORTHO05D008295 9.3e-240 833.6 566 75.1
Nitab4.5_0002342g0020 Nicotiana tabacum HOM05D006362 ORTHO05D008295 3.5e-239 831.6 558 76.2
Nn1g07069 Nelumbo nucifera HOM05D006362 ORTHO05D008295 6.0e-239 830.9 548 76.3
HanXRQChr13g0407741 Helianthus annuus HOM05D006362 ORTHO05D008295 1.0e-238 830.1 558 75.3
PSO832G4364 Papaver somniferum HOM05D006362 ORTHO05D008295 1.0e-238 830.1 566 74.2
Aqoxy1G03661 Aquilegia oxysepala HOM05D006362 ORTHO05D008295 5.1e-238 827.8 568 73.8
Oeu021406.2 Olea europaea HOM05D006362 ORTHO05D008295 1.9e-237 825.9 569 72.9
Cc05_g13400 Coffea canephora HOM05D006362 ORTHO05D008295 1.6e-236 822.8 565 74.0
Sc14g0006480 Simmondsia chinensis HOM05D006362 ORTHO05D008295 8.2e-236 820.5 568 73.8
Solyc10g006410.3 Solanum lycopersicum HOM05D006362 ORTHO05D008295 1.1e-235 820.1 564 73.6
Sopen10g002360 Solanum pennellii HOM05D006362 ORTHO05D008295 6.9e-235 817.4 564 73.4
ECA240G1610 Erigeron canadensis HOM05D006362 ORTHO05D008295 1.3e-233 813.1 558 74.2
PGR031G2573 Punica granatum HOM05D006362 ORTHO05D008295 6.5e-233 810.8 548 76.6
CAN.G1781.12 Capsicum annuum HOM05D006362 ORTHO05D008295 5.5e-232 807.7 566 73.0
DCAR_022536 Daucus carota HOM05D006362 ORTHO05D008295 5.5e-232 807.7 586 71.5
A03p39180 Brassica napus HOM05D006362 ORTHO05D008295 6.1e-231 804.3 567 73.4
BolC3t17030H Brassica oleracea HOM05D006362 ORTHO05D008295 7.9e-231 803.9 567 73.4
C03p47540 Brassica napus HOM05D006362 ORTHO05D008295 1.4e-230 803.1 567 73.2
Thhalv10020417m.g Eutrema salsugineum HOM05D006362 ORTHO05D008295 2.3e-230 802.4 569 72.6
BraA03t13067Z Brassica rapa HOM05D006362 ORTHO05D008295 3.0e-230 802.0 567 73.0
Sp3g13370 Schrenkiella parvula HOM05D006362 ORTHO05D008295 5.1e-230 801.2 569 72.8
Carub.0003s1481 Capsella rubella HOM05D006362 ORTHO05D008295 6.7e-230 800.8 569 73.1
CARHR090140 Cardamine hirsuta HOM05D006362 ORTHO05D008295 2.5e-229 798.9 567 72.5
AT3G15160 Arabidopsis thaliana HOM05D006362 ORTHO05D008295 4.3e-229 798.1 569 72.2
AL3G27550 Arabidopsis lyrata HOM05D006362 ORTHO05D008295 9.7e-229 797.0 569 72.6
Aa31LG8G2360 Aethionema arabicum HOM05D006362 ORTHO05D008295 3.7e-228 795.0 567 71.8
Gorai.009G425700 Gossypium raimondii HOM05D006362 ORTHO05D008295 3.1e-227 792.0 569 70.5
ATR0697G203 Amborella trichopoda HOM05D006362 ORTHO05D008295 1.5e-226 789.6 561 71.5
Ah.06g182950 Amaranthus hybridus HOM05D006362 ORTHO05D008295 1.0e-225 786.9 573 70.5
Rhsim06G0213400 Rhododendron simsii HOM05D006362 ORTHO05D008295 1.0e-225 786.9 606 70.0
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 1.6e-223 779.6 564 71.6
BcaC01g03890 Brassica carinata HOM05D006362 ORTHO05D008295 4.7e-223 778.1 589 69.3
Peaxi162Scf00387g00613 Petunia axillaris HOM05D006362 ORTHO05D008295 1.0e-222 776.9 556 71.6
HPP92_009387 Vanilla planifolia HOM05D006362 ORTHO05D008295 1.8e-222 776.2 567 69.8
AUR62020525 Chenopodium quinoa HOM05D006362 ORTHO05D008295 3.3e-221 771.9 549 72.3
FAN17G1244 Fragaria x ananassa HOM05D006362 ORTHO05D008295 7.4e-221 770.8 581 70.7
ClCG05G014560 Citrullus lanatus HOM05D006362 ORTHO05D008295 6.9e-219 764.2 581 68.8
EL10Ac4g07932 Beta vulgaris HOM05D006362 ORTHO05D008295 1.2e-215 753.4 561 69.7
Sabra11G0122000 Salix brachista HOM05D006362 ORTHO05D008295 2.7e-215 752.3 603 68.2
CDE05G0917 Ceratophyllum demersum HOM05D006362 ORTHO05D008295 2.3e-214 749.2 555 70.1
Gohir.A04G020300 Gossypium hirsutum HOM05D006362 ORTHO05D008295 2.3e-214 749.2 569 68.0
SGA_v2.0_scaffold80G25930 Striga asiatica HOM05D006362 ORTHO05D008295 2.3e-214 749.2 568 68.5
Lsat_1_v5_gn_5_81640 Lactuca sativa HOM05D006362 ORTHO05D008295 8.8e-214 747.3 550 71.8
Lj1C868T5 Lonicera japonica HOM05D006362 ORTHO05D008295 7.4e-213 744.2 537 72.1
Nitab4.5_0002229g0190 Nicotiana tabacum HOM05D006362 ORTHO05D008295 4.8e-212 741.5 579 68.6
Migut.M01793 Erythranthe guttata HOM05D006362 ORTHO05D008295 8.2e-212 740.7 563 68.0
Os04g0626900 Oryza sativa ssp. japonica HOM05D006362 ORTHO05D008295 5.0e-209 731.5 563 65.7
AUR62015672 Chenopodium quinoa HOM05D006362 ORTHO05D008295 1.1e-208 730.3 572 67.1
Hund23291 Selenicereus undatus HOM05D006362 ORTHO05D008295 3.5e-194 682.2 509 69.5
CiPaw.11G185900 Carya illinoinensis HOM05D006362 ORTHO05D008295 1.5e-192 676.8 426 82.2
vmacro11753 Vaccinium macrocarpon HOM05D006362 ORTHO05D008295 1.7e-172 610.1 685 51.8
Gohir.D05G366200 Gossypium hirsutum HOM05D006362 ORTHO05D008295 9.2e-171 604.4 430 71.6
Mapoly0021s0009 Marchantia polymorpha HOM05D006362 ORTHO05D008295 4.6e-170 602.1 570 57.2
Pp3c24_12510 Physcomitrium patens HOM05D006362 ORTHO05D008295 2.5e-168 596.3 569 56.2
SMO115G0345 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 2.6e-157 559.7 567 54.5
AagrBONN_evm.TU.Sc2ySwM_117.2426 Anthoceros agrestis HOM05D006362 ORTHO05D008295 5.6e-152 542.0 570 51.2
Pp3c23_6050 Physcomitrium patens HOM05D006362 ORTHO05D008295 1.8e-142 510.4 555 53.5
BolC3t17019H Brassica oleracea HOM05D006362 ORTHO05D008295 5.3e-126 455.7 322 72.7
PGSC0003DMG403014396 Solanum tuberosum HOM05D006362 ORTHO05D008295 5.0e-108 396.0 273 73.3
HPP92_009392 Vanilla planifolia HOM05D006362 ORTHO05D008295 6.5e-100 369.0 275 69.1
Zm00001eb070060 Zea mays HOM05D006362 ORTHO05D008295 7.4e-96 355.5 310 59.4
CSS0013960 Camellia sinensis var. sinensis HOM05D006362 ORTHO05D008295 3.2e-91 340.1 218 78.0
PGSC0003DMG402014396 Solanum tuberosum HOM05D006362 ORTHO05D008295 3.3e-75 287.0 196 72.4
Rhsim12G0205700 Rhododendron simsii HOM05D006362 ORTHO05D008295 2.4e-54 217.6 294 48.3
SEGI_18975 Sequoiadendron giganteum HOM05D006362 ORTHO05D008295 7.1e-54 216.1 166 66.3
CBR_g57499 Chara braunii HOM05D006362 ORTHO05D008295 3.2e-46 190.7 233 42.9
SHI31860 Sapria himalayana HOM05D006362 ORTHO05D008295 3.9e-44 183.7 145 64.8
Cpa.g.sc131.92 Carica papaya HOM05D006362 ORTHO05D008295 4.3e-43 180.3 112 80.4
VMungo0251G2436 Vigna mungo HOM05D006362 ORTHO05D008295 5.6e-43 179.9 113 79.6
Gorai.002G084600 Gossypium raimondii HOM05D006362 ORTHO05D008295 4.4e-40 170.2 120 69.2
Gohir.D01G063866 Gossypium hirsutum HOM05D006362 ORTHO05D008295 1.2e-37 162.2 120 65.8
SEGI_13710 Sequoiadendron giganteum HOM05D006362 ORTHO05D008295 1.7e-31 141.7 132 56.8
Hma1.2p1_1609F.1_g293480 Hydrangea macrophylla HOM05D006362 ORTHO05D008295 7.1e-30 136.3 185 48.1
HPP92_009393 Vanilla planifolia HOM05D006362 ORTHO05D008295 2.2e-23 114.8 96 59.4
SMO347G0562 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 4.9e-23 113.6 178 41.0
CBR_g57501 Chara braunii HOM05D006362 ORTHO05D008295 2.4e-22 111.3 121 49.6
SMO228G0126 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 1.6e-21 108.6 198 37.4
HanXRQChr16g0507081 Helianthus annuus HOM05D006362 ORTHO05D008295 2.5e-19 101.3 82 64.6
SMO111G0176 Selaginella moellendorffii HOM05D013632 ORTHO05D008295 1.7e-15 88.6 88 51.1
SMO167G0061 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 2.2e-15 88.2 141 43.3
Cc02_g13940 Coffea canephora HOM05D006362 ORTHO05D008295 1.9e-11 75.1 55 72.7
SMO122G0015 Selaginella moellendorffii HOM05D006362 ORTHO05D374567 5.7e-11 73.6 95 45.3
SMO009G0006 Selaginella moellendorffii HOM05D013632 ORTHO05D379378 8.2e-10 69.7 150 35.3
SMO014G0021 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 1.8e-09 68.6 175 32.0
SMO118G0508 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 9.0e-09 66.2 208 28.4
Lsat_1_v5_gn_3_32440 Lactuca sativa HOM05D006362 ORTHO05D228842 4.5e-08 63.9 51 68.6
Cpa.g.sc131.91 Carica papaya HOM05D006362 ORTHO05D116658 5.8e-08 63.5 37 78.4
BcaB04g20946 Brassica carinata HOM05D006362 ORTHO05D008295 2.9e-07 61.2 45 66.7
SMO144G0005 Selaginella moellendorffii HOM05D013632 ORTHO05D378182 1.1e-06 59.3 84 40.5
RcHm_v2.0_Chr4g0399371 Rosa chinensis HOM05D006362 ORTHO05D341637 1.9e-06 58.5 45 64.4


User provided reference genes

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