Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0014225 Lotus japonicus HOM05D004188 ORTHO05D004445 1.3e-42 176.8 157 100.0
TPR.G15542 Trifolium pratense HOM05D004188 ORTHO05D004445 5.5e-17 91.7 72 70.8
Phvul.011G078900 Phaseolus vulgaris HOM05D004188 ORTHO05D004445 1.6e-16 90.1 72 73.6
Glyma.12G067800 Glycine max HOM05D004188 ORTHO05D004445 8.0e-16 87.8 73 72.6
Glyma.11G146900 Glycine max HOM05D004188 ORTHO05D004445 3.0e-15 85.9 73 68.5
VMungo1127G1131 Vigna mungo HOM05D000847 ORTHO05D003278 4.0e-15 85.5 72 70.8
Lalb_Chr14g0374691 Lupinus albus HOM05D004188 ORTHO05D004445 4.4e-14 82.0 70 64.3
Medtr4g059520 Medicago truncatula HOM05D004188 ORTHO05D004445 7.5e-14 81.3 70 65.7
Medtr4g459420 Medicago truncatula HOM05D004188 ORTHO05D004445 7.5e-14 81.3 70 65.7
Psat7g224760 Pisum sativum HOM05D004188 ORTHO05D004445 1.3e-13 80.5 67 70.1
CiPaw.14G080400 Carya illinoinensis HOM05D004188 ORTHO05D004445 2.2e-13 79.7 72 61.1
Prupe.6G101100 Prunus persica HOM05D004188 ORTHO05D004445 2.8e-13 79.3 70 64.3
RcHm_v2.0_Chr5g0059401 Rosa chinensis HOM05D004188 ORTHO05D004445 4.9e-13 78.6 70 58.6
Ca_05256_v3 Cicer arietinum L. HOM05D004188 ORTHO05D004445 8.3e-13 77.8 72 63.9
Manes.04G021600 Manihot esculenta HOM05D004188 ORTHO05D004445 5.4e-12 75.1 69 58.0
arahy.Tifrunner.gnm1.ann1.86U5T6 Arachis hypogaea HOM05D004188 ORTHO05D004445 2.0e-11 73.2 66 68.2
arahy.Tifrunner.gnm1.ann1.D47N05 Arachis hypogaea HOM05D004188 ORTHO05D004445 2.0e-11 73.2 66 68.2
Solyc06g016790.3 Solanum lycopersicum HOM05D004188 ORTHO05D004445 3.5e-11 72.4 59 66.1
Sopen06g005740 Solanum pennellii HOM05D004188 ORTHO05D004445 3.5e-11 72.4 59 66.1
PGSC0003DMG400029164 Solanum tuberosum HOM05D004188 ORTHO05D004445 4.5e-11 72.0 55 70.9
CAN.G920.1 Capsicum annuum HOM05D004188 ORTHO05D004445 5.9e-11 71.6 66 60.6
Cc01_g11150 Coffea canephora HOM05D004188 ORTHO05D004445 7.8e-11 71.2 69 59.4
FAN11G3469 Fragaria x ananassa HOM05D004188 ORTHO05D004445 1.0e-10 70.9 65 56.9
MBI07_g19312_MAGBIO Magnolia biondii HOM05D004188 ORTHO05D004445 2.9e-10 69.3 53 67.9
TWI75G1406 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 2.9e-10 69.3 65 58.5
Lalb_Chr22g0350231 Lupinus albus HOM05D004188 ORTHO05D004445 8.6e-10 67.8 71 54.9
Glyma.12G172900 Glycine max HOM05D004188 ORTHO05D004445 1.1e-09 67.4 70 55.7
FvH4_3g32420 Fragaria vesca HOM05D004188 ORTHO05D004445 1.5e-09 67.0 51 66.7
Lalb_Chr03g0027321 Lupinus albus HOM05D004188 ORTHO05D004445 1.5e-09 67.0 68 57.4
Oeu001268.1 Olea europaea HOM05D004188 ORTHO05D004445 1.5e-09 67.0 70 55.7
Oeu002868.1 Olea europaea HOM05D004188 ORTHO05D004445 3.3e-09 65.9 70 54.3
Cfa011320 Carpinus fangiana HOM05D004188 ORTHO05D004445 5.6e-09 65.1 67 56.7
Ca_01416_v3 Cicer arietinum L. HOM05D004188 ORTHO05D004445 5.6e-09 65.1 64 54.7
FAN25G0660 Fragaria x ananassa HOM05D004188 ORTHO05D004445 5.6e-09 65.1 65 55.4
Hma1.2p1_1031F.1_g250070 Hydrangea macrophylla HOM05D004188 ORTHO05D004445 5.6e-09 65.1 63 54.0
MSTRG.21125 Avicennia marina HOM05D004188 ORTHO05D004445 1.2e-08 63.9 59 61.0
PGR102G1665 Punica granatum HOM05D004188 ORTHO05D004445 1.2e-08 63.9 65 52.3
FAN16G2082 Fragaria x ananassa HOM05D004188 ORTHO05D004445 1.6e-08 63.5 70 50.0
FAN21G0748 Fragaria x ananassa HOM05D004188 ORTHO05D004445 1.6e-08 63.5 51 64.7
Oeu030181.1 Olea europaea HOM05D004188 ORTHO05D004445 1.6e-08 63.5 70 51.4
VMungo1080G0149 Vigna mungo HOM05D004188 ORTHO05D004445 1.6e-08 63.5 54 63.0
MBI10_g41700_MAGBIO Magnolia biondii HOM05D004188 ORTHO05D004445 2.1e-08 63.2 60 53.3
Phvul.005G135700 Phaseolus vulgaris HOM05D004188 ORTHO05D004445 2.1e-08 63.2 59 59.3
Psat5g278280 Pisum sativum HOM05D004188 ORTHO05D004445 2.1e-08 63.2 66 50.0
TPR.G11601 Trifolium pratense HOM05D004188 ORTHO05D004445 2.1e-08 63.2 69 47.8
CANSAT54G2412 Cannabis sativa HOM05D004188 ORTHO05D004445 2.8e-08 62.8 70 50.0
CiPaw.13G112700 Carya illinoinensis HOM05D004188 ORTHO05D004445 3.6e-08 62.4 70 52.9
Rhsim13G0094200 Rhododendron simsii HOM05D004188 ORTHO05D004445 3.6e-08 62.4 56 57.1
arahy.Tifrunner.gnm1.ann1.70MDEI Arachis hypogaea HOM05D004188 ORTHO05D004445 6.1e-08 61.6 74 52.7
arahy.Tifrunner.gnm1.ann1.P4NYDW Arachis hypogaea HOM05D004188 ORTHO05D004445 6.1e-08 61.6 74 52.7
Peaxi162Scf00092g00152 Petunia axillaris HOM05D004188 ORTHO05D004445 6.1e-08 61.6 65 47.7
AT3G45230 Arabidopsis thaliana HOM05D004188 ORTHO05D004445 8.0e-08 61.2 69 49.3
Gohir.D03G134100 Gossypium hirsutum HOM05D004188 ORTHO05D004445 8.0e-08 61.2 70 47.1
Potri.009G013500 Populus trichocarpa HOM05D004188 ORTHO05D004445 8.0e-08 61.2 79 48.1
CAN.G631.25 Capsicum annuum HOM05D004188 ORTHO05D004445 1.0e-07 60.8 51 58.8
Duzib150G1311 Durio zibethinus HOM05D004188 ORTHO05D004445 1.0e-07 60.8 70 50.0
Duzib168G0960 Durio zibethinus HOM05D004188 ORTHO05D004445 1.0e-07 60.8 70 48.6
Gorai.003G141200 Gossypium raimondii HOM05D004188 ORTHO05D004445 1.0e-07 60.8 70 47.1
PGSC0003DMG400008124 Solanum tuberosum HOM05D004188 ORTHO05D004445 1.0e-07 60.8 56 53.6
Nitab4.5_0000650g0240 Nicotiana tabacum HOM05D004188 ORTHO05D004445 1.4e-07 60.5 68 48.5
Dinv31327 Davidia involucrata HOM05D001979 ORTHO05D001961 1.8e-07 60.1 46 63.0
Duzib170G0015 Durio zibethinus HOM05D004188 ORTHO05D004445 3.0e-07 59.3 68 47.1
Gohir.A03G034200 Gossypium hirsutum HOM05D004188 ORTHO05D004445 3.0e-07 59.3 70 45.7
Manes.11G144800 Manihot esculenta HOM05D004188 ORTHO05D004445 3.0e-07 59.3 69 52.2
CARHR150740 Cardamine hirsuta HOM05D004188 ORTHO05D004445 4.0e-07 58.9 68 47.1
Sabra09G0008000 Salix brachista HOM05D004188 ORTHO05D004445 4.0e-07 58.9 69 50.7
BcaB01g01101 Brassica carinata HOM05D004188 ORTHO05D004445 6.8e-07 58.2 64 54.7
Medtr2g094170 Medicago truncatula HOM05D004188 ORTHO05D004445 6.8e-07 58.2 53 50.9
Gorai.009G106500 Gossypium raimondii HOM05D004188 ORTHO05D004445 8.9e-07 57.8 50 58.0
Nitab4.5_0011114g0020 Nicotiana tabacum HOM05D004188 ORTHO05D004445 8.9e-07 57.8 50 58.0
Sed0015663 Sechium edule HOM05D004188 ORTHO05D004445 8.9e-07 57.8 60 53.3
Sc06g0010170 Simmondsia chinensis HOM05D004188 ORTHO05D004445 8.9e-07 57.8 53 54.7
DCAR_006061 Daucus carota HOM05D004188 ORTHO05D004445 1.2e-06 57.4 71 47.9
TWI31G0432 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 1.2e-06 57.4 70 50.0
HPP92_005145 Vanilla planifolia HOM05D053319 ORTHO05D004445 1.5e-06 57.0 57 50.9
Ciclev10029471m.g Citrus clementina HOM05D004188 ORTHO05D004445 2.0e-06 56.6 70 47.1
Lsat_1_v5_gn_6_46020 Lactuca sativa HOM05D004188 ORTHO05D004445 2.0e-06 56.6 71 47.9
Sabra04G0141900 Salix brachista HOM05D004188 ORTHO05D004445 2.0e-06 56.6 50 60.0
MELO3C026856.2 Cucumis melo HOM05D004188 ORTHO05D004445 2.6e-06 56.2 55 56.4
Migut.D02222 Erythranthe guttata HOM05D004188 ORTHO05D004445 2.6e-06 56.2 64 56.2
Migut.D02278 Erythranthe guttata HOM05D004188 ORTHO05D004445 2.6e-06 56.2 64 56.2
Thhalv10017667m.g Eutrema salsugineum HOM05D011190 ORTHO05D013686 2.6e-06 56.2 72 48.6
ClCG02G021140 Citrullus lanatus HOM05D004188 ORTHO05D004445 3.4e-06 55.8 56 55.4
Aa31LG5G7780 Aethionema arabicum HOM05D011190 ORTHO05D013686 4.4e-06 55.5 70 47.1
ECA233G4889 Erigeron canadensis HOM05D004188 ORTHO05D004445 4.4e-06 55.5 69 43.5
Gohir.D05G102200 Gossypium hirsutum HOM05D004188 ORTHO05D004445 4.4e-06 55.5 75 45.3
AL5G23790 Arabidopsis lyrata HOM05D004188 ORTHO05D004445 5.8e-06 55.1 69 44.9
BcaC01g01980 Brassica carinata HOM05D004188 ORTHO05D004445 5.8e-06 55.1 64 48.4
A06p21540 Brassica napus HOM05D004188 ORTHO05D004445 5.8e-06 55.1 64 48.4
C03p69850 Brassica napus HOM05D004188 ORTHO05D004445 5.8e-06 55.1 64 48.4
BolC3t19246H Brassica oleracea HOM05D004188 ORTHO05D004445 5.8e-06 55.1 64 48.4
BraA06t25239Z Brassica rapa HOM05D004188 ORTHO05D004445 5.8e-06 55.1 64 48.4
unitig_736.g22415 Utricularia gibba HOM05D004188 ORTHO05D004445 5.8e-06 55.1 56 48.2
Ah.01g014350 Amaranthus hybridus HOM05D004188 ORTHO05D004445 7.5e-06 54.7 67 47.8
Actinidia24099 Actinidia chinensis HOM05D004188 ORTHO05D004445 9.8e-06 54.3 55 52.7
BraA07t29606Z Brassica rapa HOM05D011190 ORTHO05D013686 9.8e-06 54.3 69 49.3


User provided reference genes

Program Settings