Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0009405 Lotus japonicus HOM05D004110 ORTHO05D004810 0.0e+00 3830.8 1959 100.0
Glyma.12G024600 Glycine max HOM05D004110 ORTHO05D004810 0.0e+00 3002.2 1975 79.1
Psat7g138160 Pisum sativum HOM05D004110 ORTHO05D004810 0.0e+00 2993.4 1963 78.9
Medtr4g075330 Medicago truncatula HOM05D004110 ORTHO05D004810 0.0e+00 2989.9 1963 79.2
Ca_30033_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 2972.6 2052 76.0
Lalb_Chr01g0001341 Lupinus albus HOM05D004110 ORTHO05D004810 0.0e+00 2936.7 1965 77.4
Phvul.011G026800 Phaseolus vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 2925.2 1975 77.0
Ca_19005_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 2902.8 2038 75.0
arahy.Tifrunner.gnm1.ann1.6KB8MN Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 2786.9 1970 74.4
arahy.Tifrunner.gnm1.ann1.5454UR Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 2733.7 1970 73.2
TPR.G17192 Trifolium pratense HOM05D004110 ORTHO05D004810 0.0e+00 2681.0 1963 72.5
Cfa005187 Carpinus fangiana HOM05D004110 ORTHO05D004810 0.0e+00 2318.5 1979 62.6
CiPaw.06G125000 Carya illinoinensis HOM05D004110 ORTHO05D004810 0.0e+00 2304.6 1979 62.3
QL11p047649 Quercus lobata HOM05D004110 ORTHO05D004810 0.0e+00 2260.3 2062 60.0
Dinv04965 Davidia involucrata HOM05D004110 ORTHO05D004810 0.0e+00 2209.1 1984 59.7
Actinidia29167 Actinidia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 2163.7 1983 58.4
Thecc.02G066600 Theobroma cacao HOM05D004110 ORTHO05D004810 0.0e+00 2155.6 1977 58.7
MD05G1116500 Malus domestica HOM05D004110 ORTHO05D004810 0.0e+00 2139.0 1980 58.9
Prupe.8G161000 Prunus persica HOM05D004110 ORTHO05D004810 0.0e+00 2127.1 1978 58.3
RcHm_v2.0_Chr6g0245151 Rosa chinensis HOM05D004110 ORTHO05D004810 0.0e+00 2124.7 1975 58.0
Gorai.008G034000 Gossypium raimondii HOM05D004110 ORTHO05D004810 0.0e+00 2117.8 1974 57.1
CANSAT25G3021 Cannabis sativa HOM05D004110 ORTHO05D004810 0.0e+00 2105.5 1981 57.3
Potri.009G130000 Populus trichocarpa HOM05D004110 ORTHO05D004810 0.0e+00 2102.4 1983 56.7
Manes.04G077900 Manihot esculenta HOM05D004110 ORTHO05D004810 0.0e+00 2100.1 1984 56.5
TAR376G1212 Trochodendron aralioides HOM05D004110 ORTHO05D004810 0.0e+00 2090.1 1990 57.2
Ciclev10027667m.g Citrus clementina HOM05D004110 ORTHO05D004810 0.0e+00 2088.5 1977 57.6
Rhsim05G0062900 Rhododendron simsii HOM05D004110 ORTHO05D004810 0.0e+00 2085.5 2004 56.3
Gohir.D12G033200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 2078.1 1972 56.2
GSVIVG01024075001 Vitis vinifera HOM05D004110 ORTHO05D004810 0.0e+00 2077.4 2005 57.4
FAN15G2714 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 2053.9 1971 56.7
FvH4_2g01950 Fragaria vesca HOM05D004110 ORTHO05D004810 0.0e+00 2051.6 1969 56.6
FAN20G3101 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 2050.8 1972 56.6
TWI79G0689 Tripterygium wilfordii HOM05D004110 ORTHO05D004810 0.0e+00 2038.1 1982 56.0
Sabra09G0099400 Salix brachista HOM05D004110 ORTHO05D004810 0.0e+00 2010.0 2078 53.1
PGR142G1237 Punica granatum HOM05D004110 ORTHO05D004810 0.0e+00 1988.4 1981 53.7
FAN24G2945 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1978.4 2181 51.2
Lj5C184G3 Lonicera japonica HOM05D004110 ORTHO05D004810 0.0e+00 1956.8 1996 55.1
Gohir.A12G039200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 1944.1 1788 57.6
Sed0006799 Sechium edule HOM05D004110 ORTHO05D004810 0.0e+00 1900.9 1966 53.5
MSTRG.20018 Avicennia marina HOM05D004110 ORTHO05D004810 0.0e+00 1875.1 1980 51.6
CsaV3_2G015750 Cucumis sativus L. HOM05D004110 ORTHO05D004810 0.0e+00 1874.4 1967 52.6
Cc02_g16480 Coffea canephora HOM05D004110 ORTHO05D004810 0.0e+00 1865.9 2037 51.0
DCAR_022780 Daucus carota HOM05D004110 ORTHO05D004810 0.0e+00 1859.7 1970 51.9
THA.LOC104824773 Tarenaya hassleriana HOM05D004110 ORTHO05D004810 0.0e+00 1855.5 1973 50.5
AL7G10630 Arabidopsis lyrata HOM05D004110 ORTHO05D004810 0.0e+00 1850.1 1972 50.9
AT4G38760 Arabidopsis thaliana HOM05D004110 ORTHO05D004810 0.0e+00 1845.9 1977 50.5
Migut.B00121 Erythranthe guttata HOM05D004110 ORTHO05D004810 0.0e+00 1841.6 1983 52.2
PSO675G3689 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 1837.0 1995 51.4
Thhalv10024188m.g Eutrema salsugineum HOM05D004110 ORTHO05D004810 0.0e+00 1834.3 1973 51.0
PSO541G0713 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 1827.4 1995 51.3
Carub.0007s0061 Capsella rubella HOM05D004110 ORTHO05D004810 0.0e+00 1827.0 1969 50.2
Sc18g0006650 Simmondsia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 1820.4 1977 51.3
Sp7g37050 Schrenkiella parvula HOM05D004110 ORTHO05D004810 0.0e+00 1812.7 1975 50.6
A06p48910 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 1801.2 1986 50.2
BraA06t27759Z Brassica rapa HOM05D004110 ORTHO05D004810 0.0e+00 1798.5 1989 50.0
C07p63600 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 1796.6 1986 50.1
BolC7t46773H Brassica oleracea HOM05D004110 ORTHO05D004810 0.0e+00 1795.4 1989 50.0
Sopen11g016530 Solanum pennellii HOM05D004110 ORTHO05D004810 0.0e+00 1791.5 1987 50.1
Aqoxy2G01068 Aquilegia oxysepala HOM05D004110 ORTHO05D004810 0.0e+00 1768.4 2003 49.7
MBI05_g07505_MAGBIO Magnolia biondii HOM05D004110 ORTHO05D004810 0.0e+00 1765.0 2020 49.4
ECA234G0434 Erigeron canadensis HOM05D004110 ORTHO05D004810 0.0e+00 1761.9 1975 50.4
EL10Ac9g21435 Beta vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 1757.3 2093 48.1
Ah.01g022610 Amaranthus hybridus HOM05D004110 ORTHO05D004810 0.0e+00 1735.7 1980 49.2
Hund00042 Selenicereus undatus HOM05D004110 ORTHO05D004810 0.0e+00 1729.5 1943 50.1
Nitab4.5_0007580g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 0.0e+00 1728.8 2182 46.2
AUR62013086 Chenopodium quinoa HOM05D004110 ORTHO05D004810 0.0e+00 1724.1 2019 48.3
HanXRQChr10g0299011 Helianthus annuus HOM05D004110 ORTHO05D004810 0.0e+00 1722.6 1972 49.8
SGA_v2.0_scaffold58G20427 Striga asiatica HOM05D004110 ORTHO05D004810 0.0e+00 1721.1 1985 49.2
Aa31LG6G16440 Aethionema arabicum HOM05D004110 ORTHO05D004810 0.0e+00 1713.7 2023 47.9
Lsat_1_v5_gn_4_74700 Lactuca sativa HOM05D004110 ORTHO05D004810 0.0e+00 1685.6 1978 49.1
Solyc11g039880.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 0.0e+00 1651.3 1836 49.9
BcaNung01969 Brassica carinata HOM05D004110 ORTHO05D004810 0.0e+00 1637.1 1972 47.1
Eucgr.I01378 Eucalyptus grandis HOM05D004110 ORTHO05D004810 0.0e+00 1626.3 1734 52.0
Nn5g29099 Nelumbo nucifera HOM05D004110 ORTHO05D004810 0.0e+00 1574.3 1989 46.3
ATR0810G267 Amborella trichopoda HOM05D004110 ORTHO05D004810 0.0e+00 1535.8 1987 44.9
Duzib248G0147 Durio zibethinus HOM05D004110 ORTHO05D004810 0.0e+00 1389.4 1392 54.5
Peaxi162Scf00684g00023 Petunia axillaris HOM05D004110 ORTHO05D004810 0.0e+00 1387.1 1975 43.5
Cpa.g.sc37.187 Carica papaya HOM05D004110 ORTHO05D004810 0.0e+00 1343.2 1496 50.9
Haze_02193 Corylus avellana HOM05D004110 ORTHO05D004810 0.0e+00 1336.2 1369 56.3
CSS0024884 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 0.0e+00 1297.0 1259 56.7
vmacro17377 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 0.0e+00 1296.2 1396 52.4
Oeu014463.1 Olea europaea HOM05D004110 ORTHO05D004810 0.0e+00 1238.4 2322 37.1
unitig_21.g20818 Utricularia gibba HOM05D004110 ORTHO05D004810 0.0e+00 1124.0 2012 37.6
AUR62010090 Chenopodium quinoa HOM05D004110 ORTHO05D004810 4.4e-297 1025.8 1233 47.4
Pp3c5_12360 Physcomitrium patens HOM05D004110 ORTHO05D004810 3.8e-272 943.0 2056 31.8
Mapoly0001s0208 Marchantia polymorpha HOM05D004110 ORTHO05D004810 1.9e-271 940.6 2070 31.1
CAN.G603.1 Capsicum annuum HOM05D004110 ORTHO05D004810 2.3e-269 933.7 1218 45.2
Nitab4.5_0006590g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 1.1e-244 851.7 1092 45.8
Nitab4.5_0006590g0020 Nicotiana tabacum HOM05D004110 ORTHO05D004810 7.4e-244 849.0 784 56.2
AagrBONN_evm.TU.Sc2ySwM_344.4164 Anthoceros agrestis HOM05D004110 ORTHO05D004810 1.8e-242 844.3 2086 30.1
MELO3C020789.2 Cucumis melo HOM05D004110 ORTHO05D004810 6.7e-237 825.9 1014 47.9
Haze_02194 Corylus avellana HOM05D004110 ORTHO05D004810 5.7e-228 796.2 655 63.1
vmacro17378 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 1.9e-223 781.2 587 65.8
MD10G1119400 Malus domestica HOM05D004110 ORTHO05D004810 3.6e-222 776.9 704 58.9
Zm00001eb026650 Zea mays HOM05D004110 ORTHO05D004810 8.3e-195 686.0 1336 36.5
ClCG02G011600 Citrullus lanatus HOM05D004110 ORTHO05D004810 4.3e-191 673.7 746 51.5
SEGI_22139 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 1.7e-187 661.8 1430 32.1
HPP92_005008 Vanilla planifolia HOM05D004110 ORTHO05D004810 8.3e-187 659.4 838 43.4
CARHR294450 Cardamine hirsuta HOM05D004110 ORTHO05D004810 1.0e-184 652.5 740 50.5
Glyma.11G098600 Glycine max HOM05D004110 ORTHO05D004810 3.5e-177 627.5 425 77.2
Cpa.g.sc37.188 Carica papaya HOM05D004110 ORTHO05D004810 5.1e-176 623.6 479 66.4
CAN.G603.2 Capsicum annuum HOM05D004110 ORTHO05D004810 6.2e-166 590.1 718 46.4
Glyma.11G098551 Glycine max HOM05D004110 ORTHO05D004810 1.7e-163 582.0 335 82.7
CDE05G0764 Ceratophyllum demersum HOM05D004110 ORTHO05D004810 2.4e-154 551.6 704 43.3
Potri.004G168700 Populus trichocarpa HOM05D004110 ORTHO05D004810 9.6e-143 513.1 799 44.1
FAN27G1057 Fragaria x ananassa HOM05D004110 ORTHO05D004810 2.8e-142 511.5 548 53.6
COL.COLO4_17262 Corchorus olitorius HOM05D004110 ORTHO05D004810 9.0e-133 479.9 763 40.2
CBR_g5647 Chara braunii HOM05D004110 ORTHO05D004810 3.9e-128 464.5 2179 22.7
SHI05691 Sapria himalayana HOM05D004110 ORTHO05D004810 2.5e-127 461.8 511 48.7
MD10G1119600 Malus domestica HOM05D004110 ORTHO05D004810 5.2e-112 411.0 387 57.1
SHI05701 Sapria himalayana HOM05D004110 ORTHO05D004810 1.8e-109 402.5 602 42.5
SEGI_22669 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 5.0e-107 394.4 738 36.4
Os10g0154600 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 4.7e-89 334.7 609 36.9
HPP92_005015 Vanilla planifolia HOM05D004110 ORTHO05D004810 2.6e-79 302.4 626 33.7
CSS0003289 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 6.2e-73 281.2 202 67.3
Lj3g0004699 Lotus japonicus HOM05D004110 ORTHO05D004810 3.1e-72 278.9 169 85.2
ClCG02G011580 Citrullus lanatus HOM05D004110 ORTHO05D004810 1.9e-69 269.6 215 60.5
SMO171G0108 Selaginella moellendorffii HOM05D004110 ORTHO05D004810 4.3e-58 231.9 473 31.1
Duzib248G1214 Durio zibethinus HOM05D004110 ORTHO05D004810 1.4e-56 226.9 171 66.1
MD10G1119500 Malus domestica HOM05D004110 ORTHO05D004810 3.5e-52 212.2 207 54.6
FAN27G2584 Fragaria x ananassa HOM05D004110 ORTHO05D004810 2.4e-45 189.5 136 68.4
COL.COLO4_17260 Corchorus olitorius HOM05D004110 ORTHO05D004810 2.7e-44 186.0 591 28.9
MD10G1119100 Malus domestica HOM05D004110 ORTHO05D004810 8.4e-38 164.5 133 63.9
TPR.G40846 Trifolium pratense HOM05D004110 ORTHO05D004810 1.1e-37 164.1 110 78.2
COL.COLO4_17261 Corchorus olitorius HOM05D004110 ORTHO05D004810 2.1e-36 159.8 324 34.6
Solyc11g039890.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 3.9e-35 155.6 147 53.1
CSS0015162 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 8.7e-35 154.5 100 72.0
SEGI_07180 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 7.4e-34 151.4 355 32.4
CSS0008861 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 2.1e-33 149.8 120 64.2
Psat5g216640 Pisum sativum HOM05D000564 ORTHO05D015028 2.4e-29 136.3 138 55.1
Hma1.2p1_0032F.1_g019640 Hydrangea macrophylla HOM05D004110 ORTHO05D004810 2.1e-28 133.3 94 68.1
ClCG02G011590 Citrullus lanatus HOM05D004110 ORTHO05D004810 1.8e-27 130.2 92 65.2
arahy.Tifrunner.gnm1.ann1.G8A5JV Arachis hypogaea HOM05D004110 ORTHO05D004810 1.1e-26 127.5 91 68.1
MCO14G095 Micromonas commoda HOM05D004110 ORTHO05D004810 4.3e-26 125.6 1271 20.7
AUR62040642 Chenopodium quinoa HOM05D004110 ORTHO05D004810 1.1e-24 120.9 112 55.4
Psat1g093160 Pisum sativum HOM05D004110 ORTHO05D004810 9.0e-24 117.9 71 78.9
Gohir.A12G039250 Gossypium hirsutum HOM05D004110 ORTHO05D004810 3.4e-23 115.9 99 58.6
SHI05700 Sapria himalayana HOM05D004110 ORTHO05D004810 3.4e-23 115.9 125 46.4
ClCG02G011550 Citrullus lanatus HOM05D004110 ORTHO05D004810 4.5e-23 115.5 136 50.7
Ciclev10029869m.g Citrus clementina HOM05D004110 ORTHO05D004810 2.1e-20 106.7 138 44.9
CSS0014003 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 1.5e-18 100.5 91 59.3
TPR.G30321 Trifolium pratense HOM05D004110 ORTHO05D004810 1.5e-18 100.5 76 69.7
Zm00001eb026660 Zea mays HOM05D004110 ORTHO05D004810 1.9e-18 100.1 123 39.8
VMungo0464G1786 Vigna mungo HOM05D004110 ORTHO05D004810 2.5e-18 99.8 90 58.9
Psat0s2087g0160 Pisum sativum HOM05D001944 ORTHO05D002405 1.6e-17 97.1 111 50.5
Psat5g172200 Pisum sativum HOM05D001670 ORTHO05D015028 6.3e-17 95.1 68 66.2
SHI05699 Sapria himalayana HOM05D004110 ORTHO05D004810 1.4e-16 94.0 156 37.2
Glyma.19G036450 Glycine max HOM05D004110 ORTHO05D004810 3.1e-16 92.8 71 64.8
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 4.1e-16 92.4 153 41.2
HPP92_005007 Vanilla planifolia HOM05D004110 ORTHO05D004810 4.1e-16 92.4 690 21.4
PGSC0003DMG400022052 Solanum tuberosum HOM05D004110 ORTHO05D004810 5.3e-16 92.0 68 67.6
Os10g0154566 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 9.0e-16 91.3 111 41.4
BcaB03g12223 Brassica carinata HOM05D004110 ORTHO05D004810 2.0e-15 90.1 114 50.9
BolC8t52466H Brassica oleracea HOM05D004110 ORTHO05D004810 5.9e-15 88.6 86 51.2
SEGI_16576 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 3.2e-13 82.8 214 29.9
Duzib248G0615 Durio zibethinus HOM05D004110 ORTHO05D004810 2.1e-12 80.1 159 34.6
SHI05692 Sapria himalayana HOM05D004110 ORTHO05D004810 2.1e-12 80.1 69 59.4
HanXRQChr09g0252681 Helianthus annuus HOM05D004110 ORTHO05D004810 3.6e-12 79.3 59 57.6
AagrBONN_evm.TU.Sc2ySwM_344.4149 Anthoceros agrestis HOM05D004110 ORTHO05D004810 6.1e-12 78.6 124 37.9
SHI05698 Sapria himalayana HOM05D004110 ORTHO05D004810 1.1e-10 74.3 84 44.0
Psat5g035760 Pisum sativum HOM05D001673 ORTHO05D020227 1.5e-10 73.9 51 76.5
arahy.Tifrunner.gnm1.ann1.9L03M9 Arachis hypogaea HOM05D004110 ORTHO05D004810 9.7e-10 71.2 43 74.4
Psat0s5229g0080 Pisum sativum HOM05D006670 ORTHO05D006513 8.2e-09 68.2 54 66.7
Sabra04G0113100 Salix brachista HOM05D004110 ORTHO05D004810 1.4e-08 67.4 106 43.4
Psat6g113120 Pisum sativum HOM05D020801 ORTHO05D004810 4.1e-08 65.9 52 57.7
FAN24G1876 Fragaria x ananassa HOM05D000827 ORTHO05D001318 7.7e-07 61.6 59 55.9
AT4G10843 Arabidopsis thaliana HOM05D004110 ORTHO05D038727 5.0e-06 58.9 101 36.6
Psat5g096880 Pisum sativum HOM05D020801 ORTHO05D004810 5.0e-06 58.9 43 62.8
Psat5g096920 Pisum sativum HOM05D020801 ORTHO05D004810 5.0e-06 58.9 43 62.8
Psat7g001600 Pisum sativum HOM05D020801 ORTHO05D004810 5.0e-06 58.9 43 62.8


User provided reference genes

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