Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0008110 Lotus japonicus HOM05D005732 ORTHO05D007062 1.4e-108 396.4 211 100.0
VMungo0331G0354 Vigna mungo HOM05D005732 ORTHO05D007062 2.1e-91 339.3 211 82.9
Phvul.010G146500 Phaseolus vulgaris HOM05D005732 ORTHO05D007062 2.1e-88 329.3 212 81.6
Glyma.07G017000 Glycine max HOM05D005732 ORTHO05D007062 2.8e-88 328.9 213 83.1
Lalb_Chr04g0262901 Lupinus albus HOM05D005732 ORTHO05D007062 4.0e-87 325.1 211 79.1
Psat4g197440 Pisum sativum HOM05D005732 ORTHO05D007062 7.8e-83 310.8 202 79.2
arahy.Tifrunner.gnm1.ann1.U1FWF5 Arachis hypogaea HOM05D005732 ORTHO05D007062 2.5e-81 305.8 210 76.2
arahy.Tifrunner.gnm1.ann1.Z2G3LM Arachis hypogaea HOM05D005732 ORTHO05D007062 2.5e-81 305.8 210 76.2
Medtr8g013900 Medicago truncatula HOM05D005732 ORTHO05D007062 1.2e-78 297.0 202 76.7
Haze_15828 Corylus avellana HOM05D005732 ORTHO05D007062 1.3e-74 283.5 216 72.2
Cfa003665 Carpinus fangiana HOM05D005732 ORTHO05D007062 3.0e-74 282.3 216 71.8
CiPaw.01G232900 Carya illinoinensis HOM05D005732 ORTHO05D007062 9.6e-73 277.3 217 70.0
Lj5A55G45 Lonicera japonica HOM05D005732 ORTHO05D007062 1.3e-69 266.9 212 64.6
Manes.04G132400 Manihot esculenta HOM05D005732 ORTHO05D007062 2.9e-69 265.8 213 68.1
Potri.003G050400 Populus trichocarpa HOM05D005732 ORTHO05D007062 4.9e-69 265.0 204 69.6
Dinv37994 Davidia involucrata HOM05D005732 ORTHO05D007062 1.1e-68 263.8 215 66.0
Manes.11G035100 Manihot esculenta HOM05D005732 ORTHO05D007062 2.4e-68 262.7 213 66.2
MD09G1205900 Malus domestica HOM05D005732 ORTHO05D007062 3.5e-67 258.8 214 66.8
Sabra03G0028400 Salix brachista HOM05D005732 ORTHO05D007062 6.0e-67 258.1 203 68.5
Migut.I00910 Erythranthe guttata HOM05D005732 ORTHO05D007062 7.9e-67 257.7 207 63.8
Eucgr.F03064 Eucalyptus grandis HOM05D005732 ORTHO05D007062 1.7e-66 256.5 208 66.3
RcHm_v2.0_Chr2g0140051 Rosa chinensis HOM05D005732 ORTHO05D007062 1.7e-66 256.5 218 65.1
Potri.001G188000 Populus trichocarpa HOM05D005732 ORTHO05D007062 3.0e-66 255.8 193 68.4
Ca_23241_v3 Cicer arietinum L. HOM05D005732 ORTHO05D007062 5.1e-66 255.0 196 70.4
TPR.G35018 Trifolium pratense HOM05D005732 ORTHO05D007062 1.5e-65 253.4 201 68.7
CSS0032474 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 1.9e-65 253.1 216 64.8
CSS0002541 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 2.5e-65 252.7 214 65.0
TAR626G0582 Trochodendron aralioides HOM05D005732 ORTHO05D007062 7.3e-65 251.1 212 61.3
TAR383G0371 Trochodendron aralioides HOM05D005732 ORTHO05D007062 9.6e-65 250.8 214 60.3
MSTRG.22648 Avicennia marina HOM05D005732 ORTHO05D007062 2.1e-64 249.6 189 67.2
TWI18G0404 Tripterygium wilfordii HOM05D005732 ORTHO05D007062 6.2e-64 248.1 198 66.7
Sc15g0001950 Simmondsia chinensis HOM05D005732 ORTHO05D007062 1.4e-63 246.9 214 63.1
Actinidia09002 Actinidia chinensis HOM05D005732 ORTHO05D007062 4.0e-63 245.4 215 61.4
TWI75G0681 Tripterygium wilfordii HOM05D005732 ORTHO05D007062 4.0e-63 245.4 197 65.0
CSS0006657 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 5.3e-63 245.0 213 62.9
Hma1.2p1_1689F.1_g297591 Hydrangea macrophylla HOM05D005732 ORTHO05D007062 1.2e-62 243.8 215 60.9
FAN02G4216 Fragaria x ananassa HOM05D005732 ORTHO05D007062 2.0e-62 243.0 220 61.8
FAN14G0018 Fragaria x ananassa HOM05D005732 ORTHO05D007062 2.6e-62 242.7 208 60.1
PGR102G2433 Punica granatum HOM05D005732 ORTHO05D007062 3.4e-62 242.3 203 63.5
FvH4_6g32160 Fragaria vesca HOM05D005732 ORTHO05D007062 7.6e-62 241.1 208 60.1
SalBow1G6954 Salvia bowleyana HOM05D005732 ORTHO05D007062 7.6e-62 241.1 171 69.6
FAN05G5290 Fragaria x ananassa HOM05D005732 ORTHO05D007062 9.9e-62 240.7 209 61.2
Prupe.3G061300 Prunus persica HOM05D005732 ORTHO05D007062 2.2e-61 239.6 214 62.1
QL05p020542 Quercus lobata HOM05D005732 ORTHO05D007062 2.2e-61 239.6 280 51.4
SalBow2G2342 Salvia bowleyana HOM05D005732 ORTHO05D007062 2.9e-61 239.2 171 69.0
EL10Ac9g22102 Beta vulgaris HOM05D005732 ORTHO05D007062 3.8e-61 238.8 213 60.6
Cc04_g02710 Coffea canephora HOM05D005732 ORTHO05D007062 3.8e-61 238.8 200 63.5
CANSAT56G1056 Cannabis sativa HOM05D005732 ORTHO05D007062 6.4e-61 238.0 222 60.4
CiPaw.02G147000 Carya illinoinensis HOM05D005732 ORTHO05D007062 8.4e-61 237.7 215 61.4
MBI04_g40322_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 1.4e-60 236.9 207 56.0
Hund06653 Selenicereus undatus HOM05D005732 ORTHO05D007062 1.4e-60 236.9 213 59.6
AUR62022181 Chenopodium quinoa HOM05D005732 ORTHO05D007062 1.9e-60 236.5 207 61.4
Nn2g11615 Nelumbo nucifera HOM05D005732 ORTHO05D007062 2.4e-60 236.1 200 61.0
Sabra01G0152800 Salix brachista HOM05D005732 ORTHO05D007062 3.2e-60 235.7 213 61.0
AUR62031884 Chenopodium quinoa HOM05D005732 ORTHO05D007062 4.2e-60 235.3 212 60.8
Lsat_1_v5_gn_4_99921 Lactuca sativa HOM05D005732 ORTHO05D007062 5.4e-60 235.0 170 66.5
GSVIVG01017014001 Vitis vinifera HOM05D005732 ORTHO05D007062 7.1e-60 234.6 147 77.6
Aqoxy7G01470 Aquilegia oxysepala HOM05D005732 ORTHO05D007062 9.3e-60 234.2 221 55.7
Thecc.06G097400 Theobroma cacao HOM05D005732 ORTHO05D007062 2.1e-59 233.0 210 60.5
vmacro16985 Vaccinium macrocarpon HOM05D005732 ORTHO05D007062 2.1e-59 233.0 205 60.0
Oeu050609.1 Olea europaea HOM05D005732 ORTHO05D007062 6.0e-59 231.5 214 58.4
Solyc03g120870.3 Solanum lycopersicum HOM05D005732 ORTHO05D007062 6.0e-59 231.5 167 68.9
Sopen03g039690 Solanum pennellii HOM05D005732 ORTHO05D007062 6.0e-59 231.5 167 68.9
FAN09G2308 Fragaria x ananassa HOM05D005732 ORTHO05D007062 1.0e-58 230.7 215 60.5
MSTRG.11037 Avicennia marina HOM05D005732 ORTHO05D007062 1.3e-58 230.3 208 59.6
Duzib192G0605 Durio zibethinus HOM05D005732 ORTHO05D007062 3.0e-58 229.2 223 57.8
Gohir.A02G118700 Gossypium hirsutum HOM05D005732 ORTHO05D007062 6.7e-58 228.0 206 58.7
PGSC0003DMG400002535 Solanum tuberosum HOM05D005732 ORTHO05D007062 1.9e-57 226.5 210 58.1
DCAR_016197 Daucus carota HOM05D005732 ORTHO05D007062 4.3e-57 225.3 209 56.9
COL.COLO4_30485 Corchorus olitorius HOM05D000181 ORTHO05D008575 7.4e-57 224.6 194 61.3
PSO173G0088 Papaver somniferum HOM05D005732 ORTHO05D007062 9.6e-57 224.2 212 54.7
Cpa.g.c29422 Carica papaya HOM05D005732 ORTHO05D007062 1.6e-56 223.4 171 64.3
HanXRQChr09g0275891 Helianthus annuus HOM05D005732 ORTHO05D007062 2.8e-56 222.6 171 61.4
PSO832G1217 Papaver somniferum HOM05D005732 ORTHO05D007062 4.8e-56 221.9 211 55.5
ECA232G1272 Erigeron canadensis HOM05D000181 ORTHO05D008575 6.2e-56 221.5 208 55.8
Gorai.003G063300 Gossypium raimondii HOM05D005732 ORTHO05D007062 8.1e-56 221.1 206 58.7
Sed0001710 Sechium edule HOM05D005732 ORTHO05D007062 8.1e-56 221.1 214 55.1
HanXRQChr16g0501231 Helianthus annuus HOM05D005732 ORTHO05D007062 1.1e-55 220.7 174 60.3
MELO3C024451.2 Cucumis melo HOM05D005732 ORTHO05D007062 2.4e-55 219.5 172 64.5
Lsat_1_v5_gn_1_34600 Lactuca sativa HOM05D005732 ORTHO05D007062 1.2e-54 217.2 219 53.0
CsaV3_7G035420 Cucumis sativus L. HOM05D005732 ORTHO05D007062 1.5e-54 216.9 218 55.5
Ciclev10026574m.g Citrus clementina HOM05D005732 ORTHO05D007062 2.6e-54 216.1 169 62.1
ECA247G0174 Erigeron canadensis HOM05D005732 ORTHO05D007062 1.3e-53 213.8 168 63.1
DCAR_026348 Daucus carota HOM05D005732 ORTHO05D007062 4.9e-53 211.8 180 60.6
Lj9A511T51 Lonicera japonica HOM05D005732 ORTHO05D007062 2.5e-52 209.5 247 51.8
Peaxi162Scf00038g00842 Petunia axillaris HOM05D005732 ORTHO05D007062 5.5e-52 208.4 204 55.9
HanXRQChr02g0032191 Helianthus annuus HOM05D005732 ORTHO05D007062 4.6e-51 205.3 208 52.4
Gohir.D03G059300 Gossypium hirsutum HOM05D005732 ORTHO05D007062 6.0e-51 204.9 206 55.3
Rhsim12G0202300 Rhododendron simsii HOM05D005732 ORTHO05D007062 3.7e-48 195.7 199 57.8
MBI19_g26309_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 2.4e-47 193.0 201 50.7
Atru.chr1.3497 Acer truncatum HOM05D005732 ORTHO05D007062 2.6e-46 189.5 194 53.1
Os01g0725400 Oryza sativa ssp. japonica HOM05D005732 ORTHO05D007062 7.6e-46 188.0 172 53.5
unitig_46.g18459 Utricularia gibba HOM05D005732 ORTHO05D007062 1.4e-44 183.7 164 57.3
THA.LOC104813551 Tarenaya hassleriana HOM05D005732 ORTHO05D007062 4.2e-44 182.2 147 59.9
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 2.1e-43 179.9 171 51.5
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 2.1e-43 179.9 171 51.5
Duzib160G0019 Durio zibethinus HOM05D005732 ORTHO05D007062 6.1e-43 178.3 130 68.5
BcaB06g25723 Brassica carinata HOM05D005732 ORTHO05D007062 1.0e-42 177.6 210 45.2
BcaC05g28895 Brassica carinata HOM05D005732 ORTHO05D007062 1.8e-42 176.8 200 47.0
THA.LOC104817966 Tarenaya hassleriana HOM05D005732 ORTHO05D007062 1.1e-41 174.1 169 49.7
BraA05t22147Z Brassica rapa HOM05D005732 ORTHO05D007062 1.5e-41 173.7 171 49.7
AT3G16300 Arabidopsis thaliana HOM05D005732 ORTHO05D007062 2.5e-41 172.9 170 50.0
Carub.0003s1605 Capsella rubella HOM05D005732 ORTHO05D007062 2.5e-41 172.9 169 50.3
AL3G29050 Arabidopsis lyrata HOM05D005732 ORTHO05D007062 3.3e-41 172.6 169 50.3
Thhalv10021518m.g Eutrema salsugineum HOM05D005732 ORTHO05D007062 5.7e-41 171.8 169 50.3
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 9.7e-41 171.0 130 65.4
Prupe.3G065500 Prunus persica HOM05D005732 ORTHO05D007062 1.3e-40 170.6 117 74.4
Sp3g14670 Schrenkiella parvula HOM05D005732 ORTHO05D007062 1.6e-40 170.2 208 46.2
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 2.2e-40 169.9 168 50.0
AL2G41770 Arabidopsis lyrata HOM05D005732 ORTHO05D007062 6.3e-40 168.3 171 49.7
AT1G79780 Arabidopsis thaliana HOM05D005732 ORTHO05D007062 1.8e-39 166.8 184 47.3
BcaB04g18894 Brassica carinata HOM05D005732 ORTHO05D007062 1.8e-39 166.8 160 51.9
BraA03t13125Z Brassica rapa HOM05D005732 ORTHO05D007062 5.3e-39 165.2 168 48.8
MBI04_g44953_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 5.3e-39 165.2 112 67.9
A03p39750 Brassica napus HOM05D005732 ORTHO05D007062 1.5e-38 163.7 167 49.1
BolC3t17024H Brassica oleracea HOM05D005732 ORTHO05D007062 2.0e-38 163.3 167 47.9
Thhalv10019180m.g Eutrema salsugineum HOM05D005732 ORTHO05D007062 2.0e-38 163.3 165 47.9
Aa31LG4G50 Aethionema arabicum HOM05D005732 ORTHO05D007062 2.6e-38 162.9 181 47.5
Carub.0002s2773 Capsella rubella HOM05D005732 ORTHO05D007062 2.6e-38 162.9 177 48.0
BcaC01g03830 Brassica carinata HOM05D005732 ORTHO05D007062 3.4e-38 162.5 167 47.3
BolC3t17097H Brassica oleracea HOM05D005732 ORTHO05D007062 3.4e-38 162.5 167 47.3
C06p28700 Brassica napus HOM05D005732 ORTHO05D007062 7.7e-38 161.4 171 46.8
Sp5g35990 Schrenkiella parvula HOM05D005732 ORTHO05D007062 1.0e-37 161.0 174 46.6
CARHR091510 Cardamine hirsuta HOM05D005732 ORTHO05D007062 1.3e-37 160.6 203 41.9
C03p48190 Brassica napus HOM05D005732 ORTHO05D007062 2.2e-37 159.8 162 47.5
A07p26310 Brassica napus HOM05D005732 ORTHO05D007062 1.1e-36 157.5 165 47.3
BraA07t30275Z Brassica rapa HOM05D005732 ORTHO05D007062 1.1e-36 157.5 165 47.3
Lj9C524T15 Lonicera japonica HOM05D005732 ORTHO05D007062 1.1e-36 157.5 213 46.5
BolC6t38039H Brassica oleracea HOM05D005732 ORTHO05D007062 1.9e-36 156.8 167 46.7
CDE02G4152 Ceratophyllum demersum HOM05D005732 ORTHO05D007062 2.5e-28 129.8 194 38.7
vmacro17018 Vaccinium macrocarpon HOM05D005732 ORTHO05D007062 4.7e-27 125.6 142 50.0
ClCG09G000040 Citrullus lanatus HOM05D005732 ORTHO05D007062 3.3e-25 119.4 99 56.6
ATR0705G122 Amborella trichopoda HOM05D005732 ORTHO05D007062 7.4e-25 118.2 150 48.0
Dinv30452 Davidia involucrata HOM05D005732 ORTHO05D007062 2.0e-22 110.2 111 55.0
ATR0705G087 Amborella trichopoda HOM05D005732 ORTHO05D007062 1.5e-20 104.0 66 68.2
CARHR074750 Cardamine hirsuta HOM05D005732 ORTHO05D007062 9.1e-15 84.7 70 57.1
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 2.6e-14 83.2 71 62.0
TAR622G0113 Trochodendron aralioides HOM05D003184 ORTHO05D000394 4.7e-11 72.4 154 31.2
Sc15g0002000 Simmondsia chinensis HOM05D005732 ORTHO05D007062 1.4e-10 70.9 43 72.1
Eucgr.I01612 Eucalyptus grandis HOM05D003184 ORTHO05D000394 1.5e-09 67.4 177 27.1
PGR142G2053 Punica granatum HOM05D003184 ORTHO05D000394 2.6e-09 66.6 170 31.8
Atru.chr6.2627 Acer truncatum HOM05D003184 ORTHO05D000394 5.7e-09 65.5 155 31.0
Atru.chr6.2662 Acer truncatum HOM05D003184 ORTHO05D000394 5.7e-09 65.5 155 31.0
SMO220G0003 Selaginella moellendorffii HOM05D002232 ORTHO05D002323 1.7e-08 63.9 154 29.9
CARHR049040 Cardamine hirsuta HOM05D005732 ORTHO05D007062 4.8e-08 62.4 73 49.3
Dinv33298 Davidia involucrata HOM05D003184 ORTHO05D000394 4.8e-08 62.4 154 28.6
Cpa.g.sc70.94 Carica papaya HOM05D003184 ORTHO05D000394 6.3e-08 62.0 155 29.7
Oeu021625.1 Olea europaea HOM05D001151 ORTHO05D001504 6.3e-08 62.0 166 28.9
RcHm_v2.0_Chr7g0189121 Rosa chinensis HOM05D003184 ORTHO05D000394 1.1e-07 61.2 181 24.9
Dinv25627 Davidia involucrata HOM05D003184 ORTHO05D000394 1.4e-07 60.8 154 28.6
EL10Ac6g13375 Beta vulgaris HOM05D003184 ORTHO05D000394 2.4e-07 60.1 150 25.3
TAR374G1504 Trochodendron aralioides HOM05D003184 ORTHO05D000394 3.1e-07 59.7 149 25.5
Sp7g23030 Schrenkiella parvula HOM05D003184 ORTHO05D000394 4.1e-07 59.3 151 30.5
CARHR232440 Cardamine hirsuta HOM05D003184 ORTHO05D000394 7.0e-07 58.5 151 29.1
FAN13G0038 Fragaria x ananassa HOM05D003184 ORTHO05D000394 7.0e-07 58.5 181 23.8
SalBow4G2503 Salvia bowleyana HOM05D003184 ORTHO05D000394 7.0e-07 58.5 154 31.2
SEGI_26621 Sequoiadendron giganteum HOM05D005509 ORTHO05D006411 7.0e-07 58.5 123 30.9
ATR0736G165 Amborella trichopoda HOM05D000748 ORTHO05D000394 1.6e-06 57.4 169 30.2
Potri.017G062100 Populus trichocarpa HOM05D003184 ORTHO05D000394 2.0e-06 57.0 149 31.5
FvH4_5g09090 Fragaria vesca HOM05D003184 ORTHO05D000394 2.7e-06 56.6 181 23.2
FAN18G2274 Fragaria x ananassa HOM05D003184 ORTHO05D000394 2.7e-06 56.6 181 23.2
FAN02G3218 Fragaria x ananassa HOM05D003184 ORTHO05D000394 3.5e-06 56.2 179 23.5
Os02g0219900 Oryza sativa ssp. japonica HOM05D002464 ORTHO05D002530 3.5e-06 56.2 151 29.8
BcaB03g12455 Brassica carinata HOM05D003184 ORTHO05D000394 4.5e-06 55.8 151 29.8
BcaC06g32947 Brassica carinata HOM05D001151 ORTHO05D001504 4.5e-06 55.8 164 29.9
CiPaw.04G002500 Carya illinoinensis HOM05D003184 ORTHO05D000394 4.5e-06 55.8 153 28.8
Cc07_g01140 Coffea canephora HOM05D003184 ORTHO05D000394 4.5e-06 55.8 166 28.9
Lsat_1_v5_gn_5_50201 Lactuca sativa HOM05D001151 ORTHO05D001504 4.5e-06 55.8 165 24.2
Haze_14924 Corylus avellana HOM05D003184 ORTHO05D000394 5.9e-06 55.5 151 29.8
DCAR_019647 Daucus carota HOM05D002464 ORTHO05D002530 5.9e-06 55.5 141 34.0
MBI14_g11685_MAGBIO Magnolia biondii HOM05D005509 ORTHO05D006411 5.9e-06 55.5 167 26.3
Mapoly0159s0027 Marchantia polymorpha HOM05D001151 ORTHO05D001504 5.9e-06 55.5 166 28.9
QL08p059131 Quercus lobata HOM05D005509 ORTHO05D006411 5.9e-06 55.5 165 29.1
EL10Ac5g11337 Beta vulgaris HOM05D003184 ORTHO05D000394 7.7e-06 55.1 178 25.3
Manes.04G090520 Manihot esculenta HOM05D003184 ORTHO05D000394 7.7e-06 55.1 152 27.6


User provided reference genes

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