Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3P855T51 Lonicera japonica HOM05D007280 ORTHO05D009108 6.2e-215 751.1 575 100.0
Peaxi162Scf00329g00097 Petunia axillaris HOM05D007280 ORTHO05D009108 2.1e-130 470.3 385 60.0
DCAR_023520 Daucus carota HOM05D007280 ORTHO05D009108 9.1e-126 454.9 379 59.6
PGSC0003DMG400031369 Solanum tuberosum HOM05D007280 ORTHO05D009108 1.0e-124 451.4 395 59.0
Hma1.2p1_0319F.1_g123900 Hydrangea macrophylla HOM05D007280 ORTHO05D009108 8.5e-124 448.4 385 59.7
CAN.G458.1 Capsicum annuum HOM05D007280 ORTHO05D009108 4.2e-123 446.0 403 57.6
HanXRQChr16g0526501 Helianthus annuus HOM05D007280 ORTHO05D009108 5.5e-123 445.7 389 59.6
Cc11_g02870 Coffea canephora HOM05D007280 ORTHO05D009108 1.4e-121 441.0 382 60.2
Sopen04g003730 Solanum pennellii HOM05D007280 ORTHO05D009108 1.4e-121 441.0 386 58.5
Solyc04g008570.4 Solanum lycopersicum HOM05D007280 ORTHO05D009108 1.2e-120 438.0 386 58.0
CSS0013384 Camellia sinensis var. sinensis HOM05D007280 ORTHO05D009108 4.7e-114 416.0 391 56.5
Cpa.g.sc2.97 Carica papaya HOM05D007280 ORTHO05D009108 6.1e-114 415.6 359 57.4
Nn4g24834 Nelumbo nucifera HOM05D007280 ORTHO05D009108 5.2e-113 412.5 365 56.2
Potri.010G098700 Populus trichocarpa HOM05D007280 ORTHO05D009108 5.2e-113 412.5 365 57.3
Rhsim04G0168900 Rhododendron simsii HOM05D007280 ORTHO05D009108 4.9e-111 406.0 381 55.6
MSTRG.17728 Avicennia marina HOM05D007280 ORTHO05D009108 8.3e-111 405.2 385 58.4
Sabra08G0108200 Salix brachista HOM05D007280 ORTHO05D009108 8.3e-111 405.2 374 55.1
Thecc.09G239200 Theobroma cacao HOM05D007280 ORTHO05D009108 1.1e-110 404.8 368 54.6
Prupe.1G342100 Prunus persica HOM05D007280 ORTHO05D009108 3.2e-110 403.3 382 55.0
Ciclev10004581m.g Citrus clementina HOM05D007280 ORTHO05D009108 5.4e-110 402.5 350 56.9
Lsat_1_v5_gn_3_27640 Lactuca sativa HOM05D007280 ORTHO05D009108 9.2e-110 401.7 362 56.4
Psat6g095680 Pisum sativum HOM05D007280 ORTHO05D009108 5.6e-107 392.5 376 53.2
ECA246G2688 Erigeron canadensis HOM05D007280 ORTHO05D009108 2.1e-106 390.6 339 56.3
MD13G1010900 Malus domestica HOM05D007280 ORTHO05D009108 4.0e-105 386.3 357 54.3
TPR.G35854 Trifolium pratense HOM05D007280 ORTHO05D009108 4.0e-105 386.3 366 52.7
Haze_01575 Corylus avellana HOM05D007280 ORTHO05D009108 6.8e-105 385.6 375 52.5
Medtr1g033840 Medicago truncatula HOM05D007280 ORTHO05D009108 7.5e-104 382.1 369 50.9
Phvul.003G013000 Phaseolus vulgaris HOM05D007280 ORTHO05D009108 7.5e-104 382.1 365 51.0
FAN12G0470 Fragaria x ananassa HOM05D007280 ORTHO05D009108 2.2e-103 380.6 367 52.9
Lj2g0005518 Lotus japonicus HOM05D007280 ORTHO05D009108 2.9e-103 380.2 375 52.0
Ca_12458_v3 Cicer arietinum L. HOM05D007280 ORTHO05D009108 4.9e-103 379.4 386 50.8
MD16G1008400 Malus domestica HOM05D007280 ORTHO05D009108 4.9e-103 379.4 377 51.7
FvH4_4g36140 Fragaria vesca HOM05D007280 ORTHO05D009108 6.4e-103 379.0 367 53.1
FAN07G2371 Fragaria x ananassa HOM05D007280 ORTHO05D009108 1.9e-102 377.5 367 52.6
Glyma.20G010600 Glycine max HOM05D007280 ORTHO05D009108 1.9e-102 377.5 364 52.2
VMungo1215G2162 Vigna mungo HOM05D007280 ORTHO05D009108 7.0e-102 375.6 358 50.8
Lalb_Chr17g0338341 Lupinus albus HOM05D007280 ORTHO05D009108 9.2e-102 375.2 373 51.5
TWI74G1184 Tripterygium wilfordii HOM05D007280 ORTHO05D009108 1.7e-100 370.9 369 52.3
Cfa015100 Carpinus fangiana HOM05D007280 ORTHO05D009108 6.6e-100 369.0 351 52.7
Eucgr.B02618 Eucalyptus grandis HOM05D007280 ORTHO05D009108 1.9e-99 367.5 365 49.6
Sabra08G0108600 Salix brachista HOM05D007280 ORTHO05D009108 4.4e-96 356.3 375 50.7
THA.LOC104819105 Tarenaya hassleriana HOM05D007280 ORTHO05D009108 4.9e-95 352.8 371 48.2
SalBow3G1417 Salvia bowleyana HOM05D007280 ORTHO05D009108 3.9e-92 343.2 328 52.4
Gohir.D06G095050 Gossypium hirsutum HOM05D007280 ORTHO05D009108 3.3e-91 340.1 372 48.4
Sabra10G0071200 Salix brachista HOM05D007280 ORTHO05D009108 7.3e-91 339.0 365 49.9
Gohir.A09G112200 Gossypium hirsutum HOM05D007280 ORTHO05D009108 8.1e-90 335.5 355 48.2
Aa31sc65G20 Aethionema arabicum HOM05D007280 ORTHO05D009108 1.8e-89 334.3 328 51.2
Gohir.D09G108900 Gossypium hirsutum HOM05D007280 ORTHO05D009108 6.8e-89 332.4 367 48.2
Gorai.006G126500 Gossypium raimondii HOM05D007280 ORTHO05D009108 1.3e-87 328.2 367 47.7
Thhalv10016019m.g Eutrema salsugineum HOM05D007280 ORTHO05D009108 1.9e-86 324.3 367 48.5
PGR044G2110 Punica granatum HOM05D007280 ORTHO05D009108 1.9e-86 324.3 372 47.3
Duzib168G0083 Durio zibethinus HOM05D007280 ORTHO05D009108 7.8e-85 318.9 364 47.0
ATR0705G126 Amborella trichopoda HOM05D007280 ORTHO05D009108 3.9e-84 316.6 370 43.8
Carub.0006s1195 Capsella rubella HOM05D007280 ORTHO05D009108 3.9e-84 316.6 329 48.9
Potri.008G142900 Populus trichocarpa HOM05D007280 ORTHO05D009108 5.1e-84 316.2 375 46.7
AL6G24390 Arabidopsis lyrata HOM05D007280 ORTHO05D009108 1.5e-83 314.7 329 49.8
GSVIVG01010259001 Vitis vinifera HOM05D007280 ORTHO05D009108 1.5e-83 314.7 340 48.8
AT5G13770 Arabidopsis thaliana HOM05D007280 ORTHO05D009108 3.3e-83 313.5 329 49.2
Migut.N02514 Erythranthe guttata HOM05D007280 ORTHO05D009108 1.6e-82 311.2 371 46.6
Sp6g30250 Schrenkiella parvula HOM05D007280 ORTHO05D009108 9.9e-80 302.0 329 46.5
A02p02170 Brassica napus HOM05D007280 ORTHO05D009108 3.8e-79 300.1 360 45.8
BraA02t05191Z Brassica rapa HOM05D007280 ORTHO05D009108 1.1e-78 298.5 360 45.6
Lsat_1_v5_gn_4_26101 Lactuca sativa HOM05D007280 ORTHO05D009108 1.1e-78 298.5 265 54.0
Ah.13g070140 Amaranthus hybridus HOM05D007280 ORTHO05D009108 3.2e-78 297.0 344 46.2
C02p06420 Brassica napus HOM05D007280 ORTHO05D009108 2.1e-77 294.3 361 45.2
BolC2t06588H Brassica oleracea HOM05D007280 ORTHO05D009108 2.1e-77 294.3 361 45.2
TAR622G0173 Trochodendron aralioides HOM05D007280 ORTHO05D009108 1.5e-75 288.1 283 52.3
ClCG01G006970 Citrullus lanatus HOM05D007280 ORTHO05D009108 2.5e-75 287.3 284 50.7
Manes.17G093400 Manihot esculenta HOM05D007280 ORTHO05D009108 4.3e-75 286.6 283 49.8
CsaV3_5G017390 Cucumis sativus L. HOM05D007280 ORTHO05D009108 4.8e-74 283.1 285 50.2
BcaNung04186 Brassica carinata HOM05D007280 ORTHO05D009108 2.4e-73 280.8 360 44.4
Nitab4.5_0003882g0050 Nicotiana tabacum HOM05D007280 ORTHO05D009108 3.1e-73 280.4 198 68.7
MELO3C027064.2 Cucumis melo HOM05D007280 ORTHO05D009108 5.3e-73 279.6 272 50.4
Glyma.07G177100 Glycine max HOM05D007280 ORTHO05D009108 5.3e-73 279.6 286 48.3
Nitab4.5_0000129g0410 Nicotiana tabacum HOM05D007280 ORTHO05D009108 1.7e-71 274.6 198 66.7
Sed0008466 Sechium edule HOM05D007280 ORTHO05D009108 2.9e-71 273.9 281 48.4
QL03p041451 Quercus lobata HOM05D007280 ORTHO05D009108 4.9e-71 273.1 283 49.5
Oeu006355.1 Olea europaea HOM05D007280 ORTHO05D009108 8.4e-71 272.3 280 50.7
Dinv17118 Davidia involucrata HOM05D007280 ORTHO05D009108 4.2e-70 270.0 203 61.1
Os04g0583101 Oryza sativa ssp. japonica HOM05D007280 ORTHO05D009108 7.9e-69 265.8 384 39.8
PSO782G1316 Papaver somniferum HOM05D007280 ORTHO05D009108 7.4e-67 259.2 292 45.9
PSO063G1027 Papaver somniferum HOM05D007280 ORTHO05D009108 5.3e-65 253.1 292 45.2
Zm00001eb072910 Zea mays HOM05D007280 ORTHO05D009108 2.0e-64 251.1 333 39.9
AUR62019383 Chenopodium quinoa HOM05D007280 ORTHO05D009108 3.4e-64 250.4 337 41.5
AUR62006107 Chenopodium quinoa HOM05D007280 ORTHO05D009108 2.1e-61 241.1 339 41.3
CDE08G0845 Ceratophyllum demersum HOM05D007280 ORTHO05D009108 1.0e-60 238.8 306 43.8
GSVIVG01032336001 Vitis vinifera HOM05D007280 ORTHO05D009108 1.0e-60 238.8 253 47.8
MBI03_g37599_MAGBIO Magnolia biondii HOM05D007280 ORTHO05D009108 1.9e-59 234.6 378 38.6
Ciclev10006779m.g Citrus clementina HOM05D007280 ORTHO05D009108 3.7e-58 230.3 196 57.7
Aqoxy3G04194 Aquilegia oxysepala HOM05D007280 ORTHO05D009108 2.4e-57 227.6 266 47.4
CiPaw.05G161600 Carya illinoinensis HOM05D007280 ORTHO05D009108 5.8e-56 223.0 279 44.8
COL.COLO4_36459 Corchorus olitorius HOM05D007280 ORTHO05D009108 1.0e-55 222.2 270 43.3
Ah.07g205740 Amaranthus hybridus HOM05D007280 ORTHO05D009108 2.2e-55 221.1 307 40.4
RcHm_v2.0_Chr4g0445881 Rosa chinensis HOM05D007280 ORTHO05D009108 1.6e-53 214.9 367 38.7
QL11p025101 Quercus lobata HOM05D007280 ORTHO05D009108 9.6e-51 205.7 200 52.5
CDE04G3512 Ceratophyllum demersum HOM05D007280 ORTHO05D009108 6.3e-50 203.0 295 40.3
CARHR199670 Cardamine hirsuta HOM05D007280 ORTHO05D009108 1.1e-49 202.2 286 39.5
Sc14g0006690 Simmondsia chinensis HOM05D007280 ORTHO05D009108 7.6e-48 196.1 231 44.2
ECA234G4111 Erigeron canadensis HOM05D007280 ORTHO05D009108 3.0e-44 184.1 125 74.4
QL11p025168 Quercus lobata HOM05D007280 ORTHO05D009108 2.8e-26 124.4 151 38.4
Atru.chr11.1056 Acer truncatum HOM05D007280 ORTHO05D009108 8.8e-20 102.8 72 66.7
SEGI_25718 Sequoiadendron giganteum HOM05D007280 ORTHO05D009108 3.2e-14 84.3 169 27.8
Potri.005G187800 Populus trichocarpa HOM05D000001 ORTHO05D000003 2.0e-11 75.1 227 24.7
Duzib041G0348 Durio zibethinus HOM05D000001 ORTHO05D000003 9.8e-11 72.8 227 21.6
Nitab4.5_0006134g0060 Nicotiana tabacum HOM05D000424 ORTHO05D000355 3.1e-09 67.8 250 24.0
THA.LOC104798871 Tarenaya hassleriana HOM05D000001 ORTHO05D000003 1.2e-08 65.9 215 22.3
CSS0029879 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 2.7e-08 64.7 239 20.1
CSS0033537 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 2.7e-08 64.7 239 20.1
Psat7g225800 Pisum sativum HOM05D000001 ORTHO05D000003 3.5e-08 64.3 224 23.7
ClCG10G018100 Citrullus lanatus HOM05D006596 ORTHO05D008497 1.7e-07 62.0 250 21.6
MBI03_g47433_MAGBIO Magnolia biondii HOM05D007280 ORTHO05D009108 1.7e-07 62.0 41 68.3
Nn3g19691 Nelumbo nucifera HOM05D000001 ORTHO05D000003 1.7e-07 62.0 220 20.5
SMO144G0203 Selaginella moellendorffii HOM05D000001 ORTHO05D000003 2.3e-07 61.6 179 22.9
PGSC0003DMG400024803 Solanum tuberosum HOM05D000001 ORTHO05D000003 2.9e-07 61.2 221 19.5
CAN.G942.8 Capsicum annuum HOM05D000001 ORTHO05D000003 3.8e-07 60.8 201 21.9
SalBow3G4579 Salvia bowleyana HOM05D007280 ORTHO05D009108 3.8e-07 60.8 75 41.3
SMO229G0016 Selaginella moellendorffii HOM05D000001 ORTHO05D000003 5.0e-07 60.5 179 22.9
CARHR070520 Cardamine hirsuta HOM05D000001 ORTHO05D009753 6.5e-07 60.1 180 22.8
Nitab4.5_0004395g0030 Nicotiana tabacum HOM05D000001 ORTHO05D009582 8.6e-07 59.7 207 22.2
Sabra05G0143400 Salix brachista HOM05D000001 ORTHO05D000003 8.6e-07 59.7 227 22.9
SGA_v2.0_scaffold173G39172 Striga asiatica HOM05D000001 ORTHO05D000003 8.6e-07 59.7 221 19.5
AagrBONN_evm.TU.Sc2ySwM_344.871 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.1e-06 59.3 187 24.1
Ciclev10028146m.g Citrus clementina HOM05D000001 ORTHO05D000003 1.5e-06 58.9 200 20.5
Peaxi162Scf00263g00035 Petunia axillaris HOM05D000001 ORTHO05D000003 1.5e-06 58.9 231 19.9
THA.LOC104813875 Tarenaya hassleriana HOM05D000001 ORTHO05D000003 1.5e-06 58.9 231 23.4
TWI32G0826 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 1.5e-06 58.9 221 19.9
Aa31LG2G14130 Aethionema arabicum HOM05D000001 ORTHO05D000003 2.5e-06 58.2 339 21.2
HanXRQChr16g0510641 Helianthus annuus HOM05D000001 ORTHO05D009485 2.5e-06 58.2 195 24.6
Aqoxy4G01654 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 3.2e-06 57.8 299 18.7
Eucgr.K03209 Eucalyptus grandis HOM05D000855 ORTHO05D008530 3.2e-06 57.8 189 26.5
Hma1.2p1_0265F.1_g106680 Hydrangea macrophylla HOM05D000001 ORTHO05D010176 3.2e-06 57.8 283 20.8
Sopen04g026710 Solanum pennellii HOM05D000001 ORTHO05D000003 3.2e-06 57.8 221 19.0
TPR.G34116 Trifolium pratense HOM05D000001 ORTHO05D000003 3.2e-06 57.8 265 21.9
AagrBONN_evm.TU.Sc2ySwM_362.1775 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.2e-06 57.4 182 22.5
Cpa.g.sc8.109 Carica papaya HOM05D007486 ORTHO05D003673 4.2e-06 57.4 286 21.0
Thhalv10010030m.g Eutrema salsugineum HOM05D000001 ORTHO05D000003 4.2e-06 57.4 340 20.9
Lalb_Chr04g0260741 Lupinus albus HOM05D000001 ORTHO05D009582 4.2e-06 57.4 182 24.2
Nitab4.5_0000137g0310 Nicotiana tabacum HOM05D000001 ORTHO05D009582 4.2e-06 57.4 181 22.7
vmacro02777 Vaccinium macrocarpon HOM05D000001 ORTHO05D000003 4.2e-06 57.4 209 19.6
EL10Ac7g16921 Beta vulgaris HOM05D000001 ORTHO05D000003 5.5e-06 57.0 219 19.6
A07p07090 Brassica napus HOM05D007486 ORTHO05D003673 5.5e-06 57.0 167 28.1
PGR042G2334 Punica granatum HOM05D000001 ORTHO05D000003 5.5e-06 57.0 182 25.8
AagrBONN_evm.TU.Sc2ySwM_117.3665 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.2e-06 56.6 230 18.7
AagrBONN_evm.TU.Sc2ySwM_344.337 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.2e-06 56.6 191 22.5
AUR62026783 Chenopodium quinoa HOM05D000001 ORTHO05D000003 7.2e-06 56.6 225 22.2
Lalb_Chr20g0117921 Lupinus albus HOM05D000001 ORTHO05D010176 7.2e-06 56.6 278 18.7
SMO347G0257 Selaginella moellendorffii HOM05D000001 ORTHO05D000003 7.2e-06 56.6 182 23.6
Atru.BG.135.p Acer truncatum HOM05D000001 ORTHO05D009582 9.5e-06 56.2 230 22.6
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 9.5e-06 56.2 181 23.8
Glyma.12G001100 Glycine max HOM05D000001 ORTHO05D000003 9.5e-06 56.2 223 21.5
Potri.012G080200 Populus trichocarpa HOM05D000001 ORTHO05D000003 9.5e-06 56.2 186 29.0
PGR119G0130 Punica granatum HOM05D000001 ORTHO05D000003 9.5e-06 56.2 329 22.8
PGSC0003DMG400007415 Solanum tuberosum HOM05D000001 ORTHO05D000003 9.5e-06 56.2 228 20.6


User provided reference genes

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