Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3P1070T22 Lonicera japonica HOM05D017178 ORTHO05D012096 2.4e-102 375.6 193 100.0
Lj5A276G88 Lonicera japonica HOM05D017178 ORTHO05D012096 6.9e-86 320.9 193 85.5
Lj3P665T11 Lonicera japonica HOM05D017178 ORTHO05D012096 2.2e-52 209.5 141 78.0
Lj3P240T17 Lonicera japonica HOM05D017178 ORTHO05D012096 5.5e-51 204.9 146 74.0
Dinv29666 Davidia involucrata HOM05D000706 ORTHO05D001554 1.4e-22 110.5 212 39.2
Rhsim06G0200400 Rhododendron simsii HOM05D017178 ORTHO05D012096 1.5e-16 90.5 92 53.3
TAR376G1119 Trochodendron aralioides HOM05D000706 ORTHO05D001554 1.5e-16 90.5 189 36.0
Hma1.2p1_0157F.1_g069030 Hydrangea macrophylla HOM05D017178 ORTHO05D012096 5.8e-16 88.6 86 48.8
Hma1.2p1_1368F.1_g278556 Hydrangea macrophylla HOM05D017178 ORTHO05D012096 5.8e-16 88.6 86 48.8
TAR628G1033 Trochodendron aralioides HOM05D000706 ORTHO05D012096 5.8e-16 88.6 194 35.6
Lj6g0005324 Lotus japonicus HOM05D000706 ORTHO05D001554 1.1e-14 84.3 90 48.9
Manes.10G110800 Manihot esculenta HOM05D000706 ORTHO05D001554 1.4e-14 84.0 185 34.6
Glyma.11G208500 Glycine max HOM05D000706 ORTHO05D001554 2.4e-14 83.2 90 47.8
QL02p102391 Quercus lobata HOM05D043302 ORTHO05D012096 4.1e-14 82.4 170 34.1
QL02p103028 Quercus lobata HOM05D043302 ORTHO05D012096 4.1e-14 82.4 170 34.1
MD15G1440800 Malus domestica HOM05D000706 ORTHO05D012096 3.5e-13 79.3 119 37.0
Phvul.006G085500 Phaseolus vulgaris HOM05D000706 ORTHO05D012096 7.8e-13 78.2 125 34.4
Cc02_g23440 Coffea canephora HOM05D017178 ORTHO05D012096 3.9e-12 75.9 133 42.1
GSVIVG01023195001 Vitis vinifera HOM05D000706 ORTHO05D001554 3.9e-12 75.9 135 38.5
Lalb_Chr18g0053861 Lupinus albus HOM05D000706 ORTHO05D012096 1.1e-11 74.3 182 34.1
VMungo0540G0276 Vigna mungo HOM05D000706 ORTHO05D012096 1.9e-11 73.6 125 35.2
FAN19G2540 Fragaria x ananassa HOM05D000706 ORTHO05D001554 2.5e-11 73.2 93 38.7
FAN23G1421 Fragaria x ananassa HOM05D000706 ORTHO05D001554 2.5e-11 73.2 93 38.7
Gohir.D02G153300 Gossypium hirsutum HOM05D000706 ORTHO05D001554 2.5e-11 73.2 90 43.3
Gorai.005G172400 Gossypium raimondii HOM05D000706 ORTHO05D001554 2.5e-11 73.2 90 43.3
Dinv09371 Davidia involucrata HOM05D000706 ORTHO05D001554 3.3e-11 72.8 89 39.3
FvH4_1g25810 Fragaria vesca HOM05D000706 ORTHO05D001554 3.3e-11 72.8 93 38.7
FAN28G2355 Fragaria x ananassa HOM05D000706 ORTHO05D001554 3.3e-11 72.8 93 38.7
SGA_v2.0_scaffold167G38452 Striga asiatica HOM05D000706 ORTHO05D001554 3.3e-11 72.8 87 37.9
Ca_25266_v3 Cicer arietinum L. HOM05D000706 ORTHO05D001554 4.3e-11 72.4 92 37.0
PSO447G0242 Papaver somniferum HOM05D000706 ORTHO05D001554 4.3e-11 72.4 144 34.7
SalBow6G2696 Salvia bowleyana HOM05D000706 ORTHO05D001554 4.3e-11 72.4 105 38.1
GSVIVG01023170001 Vitis vinifera HOM05D000706 ORTHO05D012096 4.3e-11 72.4 89 41.6
MELO3C016482.2 Cucumis melo HOM05D000706 ORTHO05D001554 7.3e-11 71.6 172 30.2
TWI59G0710 Tripterygium wilfordii HOM05D000706 ORTHO05D001554 7.3e-11 71.6 164 34.1
Sed0026982 Sechium edule HOM05D000706 ORTHO05D012096 9.5e-11 71.2 106 37.7
PSO210G5296 Papaver somniferum HOM05D000706 ORTHO05D001554 1.2e-10 70.9 148 33.8
RcHm_v2.0_Chr6g0272281 Rosa chinensis HOM05D000706 ORTHO05D012096 1.2e-10 70.9 95 38.9
Cpa.g.sc86.38 Carica papaya HOM05D000706 ORTHO05D001554 2.1e-10 70.1 89 37.1
FAN26G0079 Fragaria x ananassa HOM05D000706 ORTHO05D001554 2.1e-10 70.1 93 37.6
Thecc.01G144400 Theobroma cacao HOM05D000706 ORTHO05D001554 2.1e-10 70.1 131 32.8
arahy.Tifrunner.gnm1.ann1.3KND2G Arachis hypogaea HOM05D000706 ORTHO05D001554 2.8e-10 69.7 122 41.8
Prupe.1G582800 Prunus persica HOM05D000706 ORTHO05D001554 2.8e-10 69.7 151 33.1
Actinidia16541 Actinidia chinensis HOM05D000706 ORTHO05D001554 4.7e-10 68.9 136 33.8
Duzib147G0053 Durio zibethinus HOM05D000706 ORTHO05D001554 6.2e-10 68.6 88 38.6
Lj2g0014541 Lotus japonicus HOM05D000706 ORTHO05D001554 1.1e-09 67.8 94 36.2
Cfa019817 Carpinus fangiana HOM05D000706 ORTHO05D001554 1.4e-09 67.4 136 34.6
TAR636G1687 Trochodendron aralioides HOM05D000325 ORTHO05D012096 1.4e-09 67.4 88 43.2
Sabra04G0084500 Salix brachista HOM05D000706 ORTHO05D001554 1.8e-09 67.0 178 29.8
Migut.B01326 Erythranthe guttata HOM05D000706 ORTHO05D001554 2.3e-09 66.6 94 35.1
CARHR204580 Cardamine hirsuta HOM05D000706 ORTHO05D001554 3.1e-09 66.2 99 36.4
Gohir.D04G177400 Gossypium hirsutum HOM05D000706 ORTHO05D001554 4.0e-09 65.9 125 33.6
Potri.004G133600 Populus trichocarpa HOM05D000706 ORTHO05D001554 4.0e-09 65.9 86 39.5
CSS0020817 Camellia sinensis var. sinensis HOM05D000185 ORTHO05D001554 5.2e-09 65.5 174 28.2
ClCG10G007330 Citrullus lanatus HOM05D000706 ORTHO05D001554 5.2e-09 65.5 128 35.2
MELO3C012577.2 Cucumis melo HOM05D000706 ORTHO05D001554 5.2e-09 65.5 161 28.6
Ciclev10026382m.g Citrus clementina HOM05D000706 ORTHO05D001554 6.8e-09 65.1 88 38.6
Gorai.012G170300 Gossypium raimondii HOM05D000706 ORTHO05D001554 6.8e-09 65.1 125 33.6
TWI79G1627 Tripterygium wilfordii HOM05D000706 ORTHO05D001554 6.8e-09 65.1 121 32.2
EL10Ac4g09693 Beta vulgaris HOM05D000706 ORTHO05D001554 1.2e-08 64.3 125 34.4
ClCG09G022930 Citrullus lanatus HOM05D000706 ORTHO05D001554 1.2e-08 64.3 123 30.9
Cc02_g27620 Coffea canephora HOM05D000706 ORTHO05D001554 1.2e-08 64.3 91 39.6
CiPaw.06G001000 Carya illinoinensis HOM05D000706 ORTHO05D001554 1.5e-08 63.9 115 35.7
PSO675G4911 Papaver somniferum HOM05D000706 ORTHO05D001554 2.6e-08 63.2 63 41.3
Ca_17061_v3 Cicer arietinum L. HOM05D000706 ORTHO05D001554 3.4e-08 62.8 66 47.0
TPR.G23221 Trifolium pratense HOM05D000706 ORTHO05D001554 3.4e-08 62.8 97 33.0
GSVIVG01000269001 Vitis vinifera HOM05D000706 ORTHO05D001554 3.4e-08 62.8 88 31.8
AT5G08430 Arabidopsis thaliana HOM05D000706 ORTHO05D001554 4.4e-08 62.4 92 35.9
MSTRG.16476 Avicennia marina HOM05D000706 ORTHO05D001554 4.4e-08 62.4 183 27.9
MD15G1140400 Malus domestica HOM05D000706 ORTHO05D001554 4.4e-08 62.4 78 38.5
arahy.Tifrunner.gnm1.ann1.2RX12T Arachis hypogaea HOM05D000706 ORTHO05D001554 5.8e-08 62.0 123 40.7
PSO541G1600 Papaver somniferum HOM05D000706 ORTHO05D001554 5.8e-08 62.0 63 39.7
Sed0009552 Sechium edule HOM05D000706 ORTHO05D001554 5.8e-08 62.0 52 46.2
EL10Ac6g14021 Beta vulgaris HOM05D000706 ORTHO05D001554 7.6e-08 61.6 194 28.4
GSVIVG01023197001 Vitis vinifera HOM05D000706 ORTHO05D012096 7.6e-08 61.6 59 49.2
Atru.chr4.14_Atru.chr4.15 Acer truncatum HOM05D000706 ORTHO05D001554 9.9e-08 61.2 94 37.2
Aqoxy5G01350_Aqoxy5G01351 Aquilegia oxysepala HOM05D000706 ORTHO05D001554 9.9e-08 61.2 84 35.7
AL6G18900 Arabidopsis lyrata HOM05D000706 ORTHO05D001554 9.9e-08 61.2 95 33.7
Prupe.4G286800 Prunus persica HOM05D000706 ORTHO05D001554 1.3e-07 60.8 95 32.6
Sc16g0009760 Simmondsia chinensis HOM05D000706 ORTHO05D001554 1.3e-07 60.8 91 39.6
THA.LOC104818393 Tarenaya hassleriana HOM05D000706 ORTHO05D001554 1.3e-07 60.8 90 36.7
Aqoxy7G00126_Aqoxy7G00127 Aquilegia oxysepala HOM05D000706 ORTHO05D001554 1.7e-07 60.5 102 29.4
COL.COLO4_12141 Corchorus olitorius HOM05D000706 ORTHO05D001554 1.7e-07 60.5 88 33.0
Thecc.02G012800 Theobroma cacao HOM05D000706 ORTHO05D001554 1.7e-07 60.5 131 29.8
Eucgr.H05064 Eucalyptus grandis HOM05D000706 ORTHO05D001554 2.9e-07 59.7 82 41.5
Carub.0006s0735 Capsella rubella HOM05D000706 ORTHO05D001554 3.7e-07 59.3 94 37.2
Ca_09585_v3 Cicer arietinum L. HOM05D005973 ORTHO05D007285 3.7e-07 59.3 64 46.9
SHI25322 Sapria himalayana HOM05D000706 ORTHO05D012096 3.7e-07 59.3 171 31.0
Ah.06g188410 Amaranthus hybridus HOM05D000706 ORTHO05D001554 4.9e-07 58.9 59 42.4
RcHm_v2.0_Chr3g0484911 Rosa chinensis HOM05D000706 ORTHO05D001554 4.9e-07 58.9 132 30.3
CsaV3_7G023180 Cucumis sativus L. HOM05D000706 ORTHO05D001554 6.4e-07 58.5 161 26.1
Medtr3g064290 Medicago truncatula HOM05D000706 ORTHO05D001554 6.4e-07 58.5 134 35.1
Nitab4.5_0000634g0010 Nicotiana tabacum HOM05D000706 ORTHO05D001554 6.4e-07 58.5 90 36.7
TAR633G2556 Trochodendron aralioides HOM05D000706 ORTHO05D012096 6.4e-07 58.5 86 37.2
Lalb_Chr22g0354261 Lupinus albus HOM05D000706 ORTHO05D001554 1.1e-06 57.8 86 39.5
Lalb_Chr24g0398681 Lupinus albus HOM05D000706 ORTHO05D001554 1.1e-06 57.8 64 39.1
Medtr6g065790 Medicago truncatula HOM05D000706 ORTHO05D001554 1.1e-06 57.8 165 24.8
HPP92_000726 Vanilla planifolia HOM05D000706 ORTHO05D012096 1.1e-06 57.8 89 33.7
FAN27G2281 Fragaria x ananassa HOM05D000706 ORTHO05D001554 1.4e-06 57.4 84 38.1
Nitab4.5_0003361g0020 Nicotiana tabacum HOM05D000706 ORTHO05D001554 1.4e-06 57.4 88 37.5
Rhsim09G0000400 Rhododendron simsii HOM05D000706 ORTHO05D001554 1.4e-06 57.4 91 35.2
AUR62006923 Chenopodium quinoa HOM05D000706 ORTHO05D001554 1.9e-06 57.0 51 49.0
FvH4_2g12310 Fragaria vesca HOM05D000706 ORTHO05D001554 1.9e-06 57.0 84 38.1
PGR102G2630 Punica granatum HOM05D000706 ORTHO05D001554 1.9e-06 57.0 86 37.2
Ah.03g136980 Amaranthus hybridus HOM05D000572 ORTHO05D000840 3.2e-06 56.2 82 37.8
Migut.B00732 Erythranthe guttata HOM05D000706 ORTHO05D001554 3.2e-06 56.2 176 29.5
Psat1g116560 Pisum sativum HOM05D000706 ORTHO05D001554 3.2e-06 56.2 62 35.5
Hund06279 Selenicereus undatus HOM05D000706 ORTHO05D001633 3.2e-06 56.2 67 35.8
Duzib248G0445 Durio zibethinus HOM05D000706 ORTHO05D001633 4.1e-06 55.8 73 32.9
Oeu064260.1 Olea europaea HOM05D000706 ORTHO05D001554 4.1e-06 55.8 102 32.4
Peaxi162Scf00428g00822 Petunia axillaris HOM05D000706 ORTHO05D001554 4.1e-06 55.8 88 35.2
Phvul.004G133700 Phaseolus vulgaris HOM05D000706 ORTHO05D001554 4.1e-06 55.8 87 34.5
CANSAT56G1438 Cannabis sativa HOM05D000706 ORTHO05D001554 5.4e-06 55.5 59 37.3
AUR62000570 Chenopodium quinoa HOM05D000706 ORTHO05D001554 5.4e-06 55.5 49 46.9
Nitab4.5_0002026g0060 Nicotiana tabacum HOM05D000001 ORTHO05D000003 5.4e-06 55.5 71 33.8
Sp6g34490 Schrenkiella parvula HOM05D000706 ORTHO05D001554 5.4e-06 55.5 129 31.8
Sopen11g024220 Solanum pennellii HOM05D000706 ORTHO05D001633 5.4e-06 55.5 71 35.2
SGA_v2.0_scaffold32G13215 Striga asiatica HOM05D000706 ORTHO05D001633 5.4e-06 55.5 70 31.4
BcaC03g13230 Brassica carinata HOM05D000706 ORTHO05D001554 7.1e-06 55.1 61 41.0
Duzib132G0594 Durio zibethinus HOM05D000706 ORTHO05D001633 7.1e-06 55.1 126 25.4
Medtr3g064260 Medicago truncatula HOM05D000706 ORTHO05D001554 7.1e-06 55.1 136 30.1
HanXRQChr17g0544101 Helianthus annuus HOM05D000706 ORTHO05D001633 9.2e-06 54.7 59 32.2
TWI75G0983 Tripterygium wilfordii HOM05D000706 ORTHO05D001633 9.2e-06 54.7 70 30.0
unitig_60.g25864 Utricularia gibba HOM05D000706 ORTHO05D001633 9.2e-06 54.7 71 31.0


User provided reference genes

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