Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3E543T1 Lonicera japonica HOM05D004552 ORTHO05D005501 1.8e-47 192.6 120 100.0
Actinidia19722 Actinidia chinensis HOM05D004552 ORTHO05D005501 8.8e-31 137.1 123 73.2
Dinv37242 Davidia involucrata HOM05D004552 ORTHO05D005501 2.6e-30 135.6 123 74.8
MSTRG.16520 Avicennia marina HOM05D004552 ORTHO05D005501 1.4e-28 129.8 123 70.7
Rhsim10G0168100 Rhododendron simsii HOM05D004552 ORTHO05D005501 5.9e-27 124.4 113 75.2
Rhsim11G0041500 Rhododendron simsii HOM05D004552 ORTHO05D005501 5.9e-27 124.4 113 75.2
Ciclev10011831m.g Citrus clementina HOM05D004552 ORTHO05D005501 2.9e-26 122.1 114 65.8
Nitab4.5_0008076g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 5.0e-26 121.3 109 76.1
Actinidia11233 Actinidia chinensis HOM05D004552 ORTHO05D005501 6.5e-26 120.9 113 71.7
Rhsim11G0041800 Rhododendron simsii HOM05D004552 ORTHO05D005501 6.5e-26 120.9 111 73.9
CAN.G206.55 Capsicum annuum HOM05D004552 ORTHO05D005501 1.5e-25 119.8 115 73.9
SalBow4G1233 Salvia bowleyana HOM05D004552 ORTHO05D005501 1.5e-25 119.8 107 67.3
Thecc.05G052700 Theobroma cacao HOM05D004552 ORTHO05D005501 2.5e-25 119.0 125 67.2
CAN.G525.45 Capsicum annuum HOM05D004552 ORTHO05D005501 3.2e-25 118.6 115 72.2
Solyc02g087180.4 Solanum lycopersicum HOM05D004552 ORTHO05D005501 4.2e-25 118.2 117 73.5
Sopen02g031920 Solanum pennellii HOM05D004552 ORTHO05D005501 4.2e-25 118.2 117 73.5
Oeu029550.1 Olea europaea HOM05D004552 ORTHO05D005501 7.2e-25 117.5 123 65.9
PGSC0003DMG400000510 Solanum tuberosum HOM05D004552 ORTHO05D005501 7.2e-25 117.5 117 73.5
HanXRQChr05g0156781 Helianthus annuus HOM05D004552 ORTHO05D005501 2.7e-24 115.5 111 71.2
COL.COLO4_27097 Corchorus olitorius HOM05D004552 ORTHO05D005501 8.0e-24 114.0 112 70.5
TWI53G0358 Tripterygium wilfordii HOM05D004552 ORTHO05D005501 2.3e-23 112.5 119 68.9
Nitab4.5_0006780g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 4.0e-23 111.7 113 68.1
Gohir.A03G063400 Gossypium hirsutum HOM05D004552 ORTHO05D005501 1.5e-22 109.8 125 64.0
Gorai.003G108400 Gossypium raimondii HOM05D004552 ORTHO05D005501 1.5e-22 109.8 125 64.0
Lsat_1_v5_gn_5_8941 Lactuca sativa HOM05D004552 ORTHO05D005501 2.6e-22 109.0 117 66.7
ClCG04G008790 Citrullus lanatus HOM05D004552 ORTHO05D005501 3.3e-22 108.6 125 64.8
Peaxi162Scf00569g00015 Petunia axillaris HOM05D004552 ORTHO05D005501 3.3e-22 108.6 115 70.4
MELO3C014263.2 Cucumis melo HOM05D004552 ORTHO05D005501 5.7e-22 107.8 125 64.8
Gohir.D03G102900 Gossypium hirsutum HOM05D004552 ORTHO05D005501 7.5e-22 107.5 125 63.2
RhsimUnG0119000 Rhododendron simsii HOM05D004552 ORTHO05D005501 7.5e-22 107.5 112 68.8
Solyc04g014240.1 Solanum lycopersicum HOM05D004552 ORTHO05D005501 7.5e-22 107.5 115 68.7
CsaV3_4G024350 Cucumis sativus L. HOM05D004552 ORTHO05D005501 9.7e-22 107.1 112 67.9
TAR369G0596 Trochodendron aralioides HOM05D004552 ORTHO05D005501 1.7e-21 106.3 125 62.4
Duzib106G1297 Durio zibethinus HOM05D004552 ORTHO05D005501 2.2e-21 105.9 125 62.4
ClCG10G016170 Citrullus lanatus HOM05D004552 ORTHO05D005501 3.7e-21 105.1 105 70.5
Sopen04g006350 Solanum pennellii HOM05D004552 ORTHO05D005501 3.7e-21 105.1 115 67.8
Migut.K00511 Erythranthe guttata HOM05D004552 ORTHO05D005501 4.8e-21 104.8 101 73.3
QL07p045485 Quercus lobata HOM05D004552 ORTHO05D005501 4.8e-21 104.8 121 64.5
THA.LOC104823245 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 4.8e-21 104.8 115 65.2
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 1.1e-20 103.6 121 61.2
Nitab4.5_0001952g0150 Nicotiana tabacum HOM05D004552 ORTHO05D005501 1.1e-20 103.6 107 71.0
Nitab4.5_0005206g0040 Nicotiana tabacum HOM05D004552 ORTHO05D005501 1.1e-20 103.6 107 71.0
Cc00_g23990 Coffea canephora HOM05D004552 ORTHO05D005501 1.4e-20 103.2 123 63.4
Cc03_g15870 Coffea canephora HOM05D004552 ORTHO05D005501 1.8e-20 102.8 123 63.4
DCAR_009290 Daucus carota HOM05D004552 ORTHO05D005501 2.4e-20 102.4 122 61.5
PGR004G2024 Punica granatum HOM05D004552 ORTHO05D005501 2.4e-20 102.4 118 66.1
Oeu026072.1 Olea europaea HOM05D004552 ORTHO05D005501 4.1e-20 101.7 121 62.0
Potri.016G084200 Populus trichocarpa HOM05D004552 ORTHO05D005501 4.1e-20 101.7 112 64.3
AUR62025361 Chenopodium quinoa HOM05D004552 ORTHO05D005501 7.0e-20 100.9 122 60.7
Sed0010830 Sechium edule HOM05D004552 ORTHO05D005501 7.0e-20 100.9 125 64.0
Hund08942 Selenicereus undatus HOM05D004552 ORTHO05D005501 2.0e-19 99.4 106 67.0
Atru.chr8.2543 Acer truncatum HOM05D004552 ORTHO05D005501 3.5e-19 98.6 106 66.0
AUR62028362 Chenopodium quinoa HOM05D004552 ORTHO05D005501 3.5e-19 98.6 111 62.2
EL10Ac7g16819 Beta vulgaris HOM05D004552 ORTHO05D005501 7.7e-19 97.4 112 61.6
Cfa017496 Carpinus fangiana HOM05D004552 ORTHO05D005501 7.7e-19 97.4 125 55.2
DCAR_002493 Daucus carota HOM05D004552 ORTHO05D005501 7.7e-19 97.4 122 59.8
Haze_20666 Corylus avellana HOM05D004552 ORTHO05D005501 2.2e-18 95.9 125 58.4
Sabra16G0091200 Salix brachista HOM05D004552 ORTHO05D005501 2.2e-18 95.9 111 62.2
Lj3g0026232 Lotus japonicus HOM05D004552 ORTHO05D005501 3.8e-18 95.1 124 59.7
Lj4g0012826 Lotus japonicus HOM05D004552 ORTHO05D005501 3.8e-18 95.1 124 59.7
Manes.08G002200 Manihot esculenta HOM05D004552 ORTHO05D005501 5.0e-18 94.7 119 66.4
unitig_899.g15236 Utricularia gibba HOM05D004552 ORTHO05D005501 8.5e-18 94.0 114 64.0
Lj5g0019559 Lotus japonicus HOM05D004552 ORTHO05D005501 1.1e-17 93.6 124 58.9
Ca_19605_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 1.5e-17 93.2 117 59.0
Thhalv10013588m.g Eutrema salsugineum HOM05D004552 ORTHO05D005501 1.9e-17 92.8 121 62.0
CSS0033785 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 2.5e-17 92.4 123 57.7
Ah.14g084480 Amaranthus hybridus HOM05D004552 ORTHO05D005501 1.2e-16 90.1 114 57.0
Prupe.2G197600 Prunus persica HOM05D004552 ORTHO05D005501 1.2e-16 90.1 125 59.2
Medtr8g075790 Medicago truncatula HOM05D004552 ORTHO05D005501 2.1e-16 89.4 113 59.3
Nn1g07079 Nelumbo nucifera HOM05D004552 ORTHO05D005501 2.7e-16 89.0 125 55.2
CARHR210480 Cardamine hirsuta HOM05D004552 ORTHO05D005501 3.6e-16 88.6 108 63.9
Eucgr.J03059 Eucalyptus grandis HOM05D004552 ORTHO05D005501 3.6e-16 88.6 112 59.8
PSO832G0086 Papaver somniferum HOM05D004552 ORTHO05D005501 3.6e-16 88.6 110 60.9
Ca_22379_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 4.7e-16 88.2 117 60.7
vmacro04719 Vaccinium macrocarpon HOM05D004552 ORTHO05D005501 1.4e-15 86.7 108 62.0
Manes.09G080009 Manihot esculenta HOM05D004552 ORTHO05D005501 4.0e-15 85.1 119 50.4
Sc07g0006230 Simmondsia chinensis HOM05D004552 ORTHO05D005501 4.0e-15 85.1 106 65.1
Manes.09G079900 Manihot esculenta HOM05D004552 ORTHO05D005501 5.2e-15 84.7 118 50.0
SHI12593 Sapria himalayana HOM05D004552 ORTHO05D005501 5.2e-15 84.7 122 51.6
Sp6g39730 Schrenkiella parvula HOM05D004552 ORTHO05D005501 5.2e-15 84.7 107 63.6
Lj6g0013650 Lotus japonicus HOM05D004552 ORTHO05D005501 8.8e-15 84.0 124 54.0
TPR.G33503 Trifolium pratense HOM05D004552 ORTHO05D005501 1.2e-14 83.6 117 53.8
RcHm_v2.0_Chr1g0360161 Rosa chinensis HOM05D004552 ORTHO05D005501 2.0e-14 82.8 120 55.8
Aa31LG1G22060 Aethionema arabicum HOM05D004552 ORTHO05D005501 2.6e-14 82.4 108 68.5
Medtr6g089780 Medicago truncatula HOM05D004552 ORTHO05D005501 2.6e-14 82.4 118 57.6
SGA_v2.0_scaffold204G41624 Striga asiatica HOM05D004552 ORTHO05D005501 3.4e-14 82.0 105 66.7
Lj6g0002066 Lotus japonicus HOM05D004552 ORTHO05D005501 5.7e-14 81.3 124 50.8
PSO210G6420 Papaver somniferum HOM05D004552 ORTHO05D005501 5.7e-14 81.3 110 58.2
CANSAT56G3582 Cannabis sativa HOM05D004552 ORTHO05D005501 2.8e-13 79.0 105 62.9
CiPaw.09G181100 Carya illinoinensis HOM05D004552 ORTHO05D005501 6.3e-13 77.8 123 53.7
arahy.Tifrunner.gnm1.ann1.52IM1F Arachis hypogaea HOM05D004552 ORTHO05D005501 1.1e-12 77.0 101 58.4
AL6G12120 Arabidopsis lyrata HOM05D004552 ORTHO05D005501 1.8e-12 76.3 111 65.8
AT5G02850 Arabidopsis thaliana HOM05D004552 ORTHO05D005501 1.8e-12 76.3 114 62.3
BcaC06g32015 Brassica carinata HOM05D004552 ORTHO05D005501 1.8e-12 76.3 111 53.2
SGA_v2.0_scaffold94G28661 Striga asiatica HOM05D004552 ORTHO05D005501 1.8e-12 76.3 106 65.1
arahy.Tifrunner.gnm1.ann1.6MTV2V Arachis hypogaea HOM05D004552 ORTHO05D005501 2.4e-12 75.9 121 53.7
arahy.Tifrunner.gnm1.ann1.CZIV0N Arachis hypogaea HOM05D004552 ORTHO05D005501 2.4e-12 75.9 121 53.7
arahy.Tifrunner.gnm1.ann1.LN9G9C Arachis hypogaea HOM05D004552 ORTHO05D005501 2.4e-12 75.9 121 53.7
arahy.Tifrunner.gnm1.ann1.URH0Q0 Arachis hypogaea HOM05D004552 ORTHO05D005501 3.1e-12 75.5 108 56.5
Psat7g019080 Pisum sativum HOM05D004552 ORTHO05D005501 5.4e-12 74.7 136 47.8
C09p73810 Brassica napus HOM05D004552 ORTHO05D005501 7.0e-12 74.3 105 57.1
BolC9t60115H Brassica oleracea HOM05D004552 ORTHO05D005501 7.0e-12 74.3 105 57.1
BraA10t45325Z Brassica rapa HOM05D001414 ORTHO05D000619 9.1e-12 73.9 111 55.0
A10p32880 Brassica napus HOM05D004552 ORTHO05D005501 1.6e-11 73.2 111 54.1
FvH4_7g16920 Fragaria vesca HOM05D004552 ORTHO05D005501 1.6e-11 73.2 120 50.0
FAN01G0370 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.6e-11 73.2 120 50.0
FAN03G3426 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.6e-11 73.2 120 50.0
RcHm_v2.0_Chr1g0361081 Rosa chinensis HOM05D004552 ORTHO05D005501 2.0e-11 72.8 117 52.1
Carub.0006s0165 Capsella rubella HOM05D004552 ORTHO05D005501 3.5e-11 72.0 114 64.0
Lalb_Chr05g0229841 Lupinus albus HOM05D004552 ORTHO05D005501 3.5e-11 72.0 117 48.7
CDE04G3741 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 5.9e-11 71.2 104 55.8
FAN06G4506 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.0e-10 70.5 120 49.2
CDE07G0444 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 1.7e-10 69.7 109 52.3
FAN06G3324 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.7e-10 69.7 111 50.5
Psat4g100360 Pisum sativum HOM05D004552 ORTHO05D005501 2.3e-10 69.3 120 50.8
FvH4_7g17650 Fragaria vesca HOM05D004552 ORTHO05D005501 3.8e-10 68.6 122 50.0
Lj6g0014683 Lotus japonicus HOM05D004552 ORTHO05D005501 3.8e-10 68.6 78 62.8
Glyma.06G188800 Glycine max HOM05D004552 ORTHO05D005501 6.6e-10 67.8 108 57.4
Glyma.08G287300 Glycine max HOM05D004552 ORTHO05D005501 6.6e-10 67.8 108 57.4
MBI18_g25517_MAGBIO Magnolia biondii HOM05D004552 ORTHO05D005501 6.6e-10 67.8 124 53.2
Glyma.13G067700 Glycine max HOM05D004552 ORTHO05D005501 8.6e-10 67.4 108 57.4
C03p01200 Brassica napus HOM05D004552 ORTHO05D005501 1.9e-09 66.2 95 55.8
BolC3t12680H Brassica oleracea HOM05D004552 ORTHO05D005501 1.9e-09 66.2 95 55.8
Phvul.003G261400 Phaseolus vulgaris HOM05D004552 ORTHO05D005501 2.5e-09 65.9 108 57.4
FAN06G0991 Fragaria x ananassa HOM05D004552 ORTHO05D005501 9.5e-09 63.9 119 51.3
BraA03t09475Z Brassica rapa HOM05D004552 ORTHO05D005501 1.6e-08 63.2 115 45.2
FAN03G1811 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.6e-08 63.2 122 47.5
VMungo0251G2800 Vigna mungo HOM05D004552 ORTHO05D005501 1.6e-08 63.2 94 60.6
PSO675G1725 Papaver somniferum HOM05D004552 ORTHO05D005501 1.5e-06 56.6 111 41.4
TPR.G27980 Trifolium pratense HOM05D004552 ORTHO05D005501 7.5e-06 54.3 39 61.5


User provided reference genes

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