Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3C988T3 Lonicera japonica HOM05D004644 ORTHO05D005700 2.6e-101 372.1 194 100.0
Lj3C987G12 Lonicera japonica HOM05D004644 ORTHO05D005700 3.9e-36 155.6 180 53.9
Peaxi162Scf00722g00210 Petunia axillaris HOM05D004644 ORTHO05D005700 2.9e-15 86.3 75 61.3
ECA238G2777 Erigeron canadensis HOM05D004644 ORTHO05D005700 3.8e-15 85.9 75 58.7
Oeu045234.3 Olea europaea HOM05D004644 ORTHO05D005700 8.4e-15 84.7 86 53.5
HanXRQChr14g0432961 Helianthus annuus HOM05D004644 ORTHO05D005700 2.4e-14 83.2 75 57.3
Lj2C119G5 Lonicera japonica HOM05D004644 ORTHO05D005700 4.2e-14 82.4 52 78.8
DCAR_009308 Daucus carota HOM05D004644 ORTHO05D005700 7.1e-14 81.6 90 53.3
Gohir.A09G145300 Gossypium hirsutum HOM05D004644 ORTHO05D005700 4.6e-13 79.0 75 56.0
vmacro07303 Vaccinium macrocarpon HOM05D004644 ORTHO05D005700 4.6e-13 79.0 82 56.1
FAN09G2255 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.7e-12 77.0 82 48.8
FAN05G3668 Fragaria x ananassa HOM05D004644 ORTHO05D005700 2.3e-12 76.6 82 48.8
FAN05G5479 Fragaria x ananassa HOM05D004644 ORTHO05D005700 3.0e-12 76.3 82 48.8
Cpa.g.sc102.17 Carica papaya HOM05D004644 ORTHO05D005700 8.7e-12 74.7 66 59.1
FvH4_6g16560 Fragaria vesca HOM05D004644 ORTHO05D005700 8.7e-12 74.7 82 47.6
Lalb_Chr20g0112551 Lupinus albus HOM05D004644 ORTHO05D005700 1.5e-11 73.9 73 53.4
Nitab4.5_0004476g0040 Nicotiana tabacum HOM05D004644 ORTHO05D005700 1.9e-11 73.6 53 69.8
Phvul.001G180000 Phaseolus vulgaris HOM05D004644 ORTHO05D005700 1.9e-11 73.6 75 50.7
HanXRQChr13g0400851 Helianthus annuus HOM05D004644 ORTHO05D005700 2.5e-11 73.2 49 73.5
Thecc.05G069300 Theobroma cacao HOM05D004644 ORTHO05D005700 3.3e-11 72.8 65 58.5
VMungo1383G2434 Vigna mungo HOM05D004644 ORTHO05D005700 4.3e-11 72.4 75 50.7
Prupe.7G127800 Prunus persica HOM05D004644 ORTHO05D005700 5.6e-11 72.0 50 72.0
Cfa017634 Carpinus fangiana HOM05D004644 ORTHO05D005700 7.3e-11 71.6 46 71.7
Solyc09g008330.3 Solanum lycopersicum HOM05D004644 ORTHO05D005700 7.3e-11 71.6 40 80.0
Sopen09g003150 Solanum pennellii HOM05D004644 ORTHO05D005700 7.3e-11 71.6 40 80.0
PGSC0003DMG402003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 7.3e-11 71.6 40 80.0
Sc02g0001570 Simmondsia chinensis HOM05D004644 ORTHO05D005700 1.6e-10 70.5 48 68.8
COL.COLO4_26937 Corchorus olitorius HOM05D004644 ORTHO05D005700 2.1e-10 70.1 59 59.3
Haze_20518 Corylus avellana HOM05D004644 ORTHO05D005700 2.1e-10 70.1 45 71.1
Lsat_1_v5_gn_2_30721 Lactuca sativa HOM05D004644 ORTHO05D005700 2.1e-10 70.1 44 72.7
AUR62042062 Chenopodium quinoa HOM05D004644 ORTHO05D005700 2.8e-10 69.7 52 65.4
Dinv35798 Davidia involucrata HOM05D004644 ORTHO05D005700 2.8e-10 69.7 89 47.2
Lsat_1_v5_gn_6_24480 Lactuca sativa HOM05D004644 ORTHO05D005700 2.8e-10 69.7 110 40.9
Gohir.D09G141400 Gossypium hirsutum HOM05D004644 ORTHO05D005700 3.6e-10 69.3 45 68.9
TWI53G0078 Tripterygium wilfordii HOM05D004644 ORTHO05D005700 3.6e-10 69.3 45 73.3
SGA_v2.0_scaffold40G15487 Striga asiatica HOM05D004644 ORTHO05D005700 4.8e-10 68.9 45 71.1
Atru.chr8.1779 Acer truncatum HOM05D004644 ORTHO05D005700 6.2e-10 68.6 58 60.3
Atru.chr8.1780 Acer truncatum HOM05D004644 ORTHO05D005700 6.2e-10 68.6 43 74.4
Lsat_1_v5_gn_6_24500 Lactuca sativa HOM05D004644 ORTHO05D005700 6.2e-10 68.6 99 44.4
RcHm_v2.0_Chr3g0470481 Rosa chinensis HOM05D004644 ORTHO05D005700 6.2e-10 68.6 76 47.4
Actinidia28913 Actinidia chinensis HOM05D004644 ORTHO05D005700 1.1e-09 67.8 44 70.5
Gorai.006G162300 Gossypium raimondii HOM05D004644 ORTHO05D005700 1.1e-09 67.8 44 68.2
QL07p043006 Quercus lobata HOM05D004644 ORTHO05D005700 1.4e-09 67.4 41 75.6
MD12G1109200 Malus domestica HOM05D004644 ORTHO05D005700 1.8e-09 67.0 44 70.5
MELO3C024470.2 Cucumis melo HOM05D004644 ORTHO05D005700 2.4e-09 66.6 73 49.3
PGR004G1497 Punica granatum HOM05D004644 ORTHO05D005700 2.4e-09 66.6 48 64.6
AUR62026918 Chenopodium quinoa HOM05D004644 ORTHO05D005700 4.0e-09 65.9 95 43.2
Migut.J00643 Erythranthe guttata HOM05D004644 ORTHO05D005700 4.0e-09 65.9 45 68.9
Manes.09G065000 Manihot esculenta HOM05D004644 ORTHO05D005700 4.0e-09 65.9 54 59.3
Atru.chr8.1778 Acer truncatum HOM05D004644 ORTHO05D005700 5.3e-09 65.5 186 33.9
arahy.Tifrunner.gnm1.ann1.W70S5M Arachis hypogaea HOM05D004644 ORTHO05D005700 5.3e-09 65.5 42 71.4
Eucgr.A01659 Eucalyptus grandis HOM05D004644 ORTHO05D005700 5.3e-09 65.5 44 70.5
Sed0011501 Sechium edule HOM05D004644 ORTHO05D005700 5.3e-09 65.5 43 69.8
FAN02G4433 Fragaria x ananassa HOM05D004644 ORTHO05D005700 6.9e-09 65.1 43 67.4
Lj1g0007058 Lotus japonicus HOM05D004644 ORTHO05D005700 6.9e-09 65.1 102 39.2
SGA_v2.0_scaffold75G24833 Striga asiatica HOM05D004644 ORTHO05D005700 6.9e-09 65.1 51 60.8
arahy.Tifrunner.gnm1.ann1.K7JVCN Arachis hypogaea HOM05D004644 ORTHO05D005700 9.0e-09 64.7 42 71.4
Psat3g041720 Pisum sativum HOM05D004644 ORTHO05D005700 9.0e-09 64.7 43 67.4
Potri.006G122800 Populus trichocarpa HOM05D004644 ORTHO05D005700 9.0e-09 64.7 68 48.5
ClCG04G009350 Citrullus lanatus HOM05D004644 ORTHO05D005700 1.2e-08 64.3 47 66.0
ECA233G2118 Erigeron canadensis HOM05D004644 ORTHO05D005700 1.2e-08 64.3 48 64.6
TPR.G32811 Trifolium pratense HOM05D004644 ORTHO05D005700 1.2e-08 64.3 75 48.0
GSVIVG01033660001 Vitis vinifera HOM05D004644 ORTHO05D005700 1.2e-08 64.3 40 72.5
Medtr7g102280 Medicago truncatula HOM05D004644 ORTHO05D005700 1.5e-08 63.9 43 67.4
EL10Ac7g16657 Beta vulgaris HOM05D004644 ORTHO05D005700 2.0e-08 63.5 47 61.7
CsaV3_6G039930 Cucumis sativus L. HOM05D004644 ORTHO05D005700 2.0e-08 63.5 46 65.2
TAR633G1934 Trochodendron aralioides HOM05D004644 ORTHO05D005700 2.0e-08 63.5 73 52.1
CSS0046520 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 4.5e-08 62.4 38 73.7
Lj1g0025951 Lotus japonicus HOM05D004644 ORTHO05D005700 4.5e-08 62.4 48 62.5
unitig_8.g4114 Utricularia gibba HOM05D004644 ORTHO05D005700 4.5e-08 62.4 46 60.9
Duzib093G1101 Durio zibethinus HOM05D004644 ORTHO05D005700 5.8e-08 62.0 46 63.0
Glyma.03G184600 Glycine max HOM05D004644 ORTHO05D005700 5.8e-08 62.0 75 46.7
Sabra06G0097000 Salix brachista HOM05D004644 ORTHO05D005700 5.8e-08 62.0 112 39.3
Nitab4.5_0000578g0020 Nicotiana tabacum HOM05D004644 ORTHO05D005700 7.6e-08 61.6 73 50.7
THA.LOC104816355 Tarenaya hassleriana HOM05D004644 ORTHO05D005700 9.9e-08 61.2 61 52.5
MSTRG.5768 Avicennia marina HOM05D004644 ORTHO05D005700 2.9e-07 59.7 43 60.5
CARHR209890 Cardamine hirsuta HOM05D004644 ORTHO05D005700 3.8e-07 59.3 98 35.7
Cc06_g04380 Coffea canephora HOM05D004644 ORTHO05D005700 4.9e-07 58.9 74 48.6
BcaB05g21841 Brassica carinata HOM05D004644 ORTHO05D005700 6.4e-07 58.5 68 45.6
Sp6g39290 Schrenkiella parvula HOM05D004644 ORTHO05D005700 6.4e-07 58.5 66 43.9
BolC2t06098H Brassica oleracea HOM05D004644 ORTHO05D005700 8.4e-07 58.2 67 43.3
Carub.0006s0226 Capsella rubella HOM05D004644 ORTHO05D005700 8.4e-07 58.2 76 40.8
BraA02t04761Z Brassica rapa HOM05D004644 ORTHO05D005700 1.4e-06 57.4 67 43.3
Thhalv10013047m.g Eutrema salsugineum HOM05D004644 ORTHO05D005700 1.4e-06 57.4 62 46.8
Rhsim03G0090100 Rhododendron simsii HOM05D004644 ORTHO05D005700 2.4e-06 56.6 38 68.4
AL6G12810 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 4.2e-06 55.8 60 45.0
Ca_08912_v3 Cicer arietinum L. HOM05D004644 ORTHO05D005700 4.2e-06 55.8 66 45.5
Prupe.7G127600 Prunus persica HOM05D004644 ORTHO05D005700 4.2e-06 55.8 38 65.8
Sc02g0001560 Simmondsia chinensis HOM05D004644 ORTHO05D005700 4.2e-06 55.8 49 55.1
C02p01080 Brassica napus HOM05D004644 ORTHO05D005700 7.1e-06 55.1 62 43.5


User provided reference genes

Program Settings