Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3C930T7 Lonicera japonica HOM05D000103 ORTHO05D000049 6.8e-31 136.7 71 100.0
Lj2C29G18 Lonicera japonica HOM05D000103 ORTHO05D000049 7.3e-17 90.1 63 77.8
Dinv20805 Davidia involucrata HOM05D000103 ORTHO05D000049 6.2e-16 87.0 65 78.5
CSS0027742 Camellia sinensis var. sinensis HOM05D000103 ORTHO05D000049 1.4e-15 85.9 58 77.6
Actinidia18584 Actinidia chinensis HOM05D000103 ORTHO05D000049 1.8e-15 85.5 59 76.3
Migut.F01640 Erythranthe guttata HOM05D000103 ORTHO05D000049 2.9e-13 78.2 62 72.6
Lj3C930T9 Lonicera japonica HOM05D000103 ORTHO05D000049 8.3e-13 76.6 63 71.4
Cc02_g09960 Coffea canephora HOM05D000103 ORTHO05D000049 3.2e-12 74.7 61 70.5
CAN.G1550.8 Capsicum annuum HOM05D000103 ORTHO05D000049 7.1e-12 73.6 68 55.9
DCAR_019012 Daucus carota HOM05D000103 ORTHO05D000049 9.2e-12 73.2 61 62.3
SalBow6G0711 Salvia bowleyana HOM05D000103 ORTHO05D000049 1.2e-11 72.8 62 71.0
Cc02_g09950 Coffea canephora HOM05D000103 ORTHO05D000049 2.1e-11 72.0 63 65.1
Peaxi162Scf00004g00041 Petunia axillaris HOM05D000103 ORTHO05D000049 3.5e-11 71.2 72 56.9
Migut.F00897 Erythranthe guttata HOM05D000103 ORTHO05D000049 4.6e-11 70.9 66 62.1
Peaxi162Scf00244g01215 Petunia axillaris HOM05D000103 ORTHO05D000049 6.0e-11 70.5 62 62.9
PGSC0003DMG400023490 Solanum tuberosum HOM05D000103 ORTHO05D000049 1.3e-10 69.3 69 55.1
TWI77G0901 Tripterygium wilfordii HOM05D000103 ORTHO05D000049 1.3e-10 69.3 62 67.7
TAR369G0961 Trochodendron aralioides HOM05D000103 ORTHO05D000049 2.3e-10 68.6 60 70.0
Duzib114G0423 Durio zibethinus HOM05D000103 ORTHO05D000049 3.0e-10 68.2 66 66.7
Oeu026569.1 Olea europaea HOM05D000103 ORTHO05D000049 3.9e-10 67.8 68 60.3
CiPaw.09G010000 Carya illinoinensis HOM05D000103 ORTHO05D000049 5.1e-10 67.4 61 62.3
QL07p039925 Quercus lobata HOM05D000103 ORTHO05D000049 6.6e-10 67.0 60 63.3
TAR623G0536 Trochodendron aralioides HOM05D000103 ORTHO05D000049 6.6e-10 67.0 60 68.3
Lsat_1_v5_gn_8_24501 Lactuca sativa HOM05D000103 ORTHO05D000049 8.6e-10 66.6 61 60.7
QL04p043050 Quercus lobata HOM05D000103 ORTHO05D000049 8.6e-10 66.6 63 66.7
Sopen05g033770 Solanum pennellii HOM05D000103 ORTHO05D000049 8.6e-10 66.6 69 53.6
GSVIVG01031377001 Vitis vinifera HOM05D000103 ORTHO05D000049 8.6e-10 66.6 61 65.6
CSS0009588 Camellia sinensis var. sinensis HOM05D000103 ORTHO05D000049 1.1e-09 66.2 61 67.2
Lsat_1_v5_gn_0_7441 Lactuca sativa HOM05D000103 ORTHO05D000049 1.1e-09 66.2 73 54.8
MD14G1018100 Malus domestica HOM05D000103 ORTHO05D000049 1.1e-09 66.2 60 65.0
HanXRQChr11g0322271 Helianthus annuus HOM05D000103 ORTHO05D000049 1.5e-09 65.9 60 66.7
CAN.G534.9 Capsicum annuum HOM05D000103 ORTHO05D000049 1.9e-09 65.5 70 52.9
Lsat_1_v5_gn_2_104821 Lactuca sativa HOM05D000103 ORTHO05D000049 1.9e-09 65.5 64 68.8
TAR369G0543 Trochodendron aralioides HOM05D000103 ORTHO05D000049 1.9e-09 65.5 60 68.3
Actinidia34711 Actinidia chinensis HOM05D000103 ORTHO05D000049 2.5e-09 65.1 61 63.9
Nn6g35005 Nelumbo nucifera HOM05D000103 ORTHO05D000049 2.5e-09 65.1 60 63.3
RcHm_v2.0_Chr5g0055131 Rosa chinensis HOM05D000103 ORTHO05D000049 2.5e-09 65.1 62 64.5
SalBow6G7100 Salvia bowleyana HOM05D000103 ORTHO05D000049 3.3e-09 64.7 49 67.3
TWI15G0425 Tripterygium wilfordii HOM05D000103 ORTHO05D000049 3.3e-09 64.7 71 60.6
Atru.chr12.978 Acer truncatum HOM05D000103 ORTHO05D000049 4.3e-09 64.3 66 62.1
ECA232G3756 Erigeron canadensis HOM05D000103 ORTHO05D000049 4.3e-09 64.3 69 53.6
Nn2g14053 Nelumbo nucifera HOM05D000103 ORTHO05D000049 4.3e-09 64.3 60 63.3
Solyc05g055330.3 Solanum lycopersicum HOM05D000103 ORTHO05D000049 4.3e-09 64.3 69 50.7
TAR636G0374 Trochodendron aralioides HOM05D000103 ORTHO05D000049 4.3e-09 64.3 60 66.7
Nitab4.5_0005390g0020 Nicotiana tabacum HOM05D000103 ORTHO05D000049 5.6e-09 63.9 61 60.7
TAR633G2791 Trochodendron aralioides HOM05D000103 ORTHO05D000049 5.6e-09 63.9 60 63.3
MD11G1159200 Malus domestica HOM05D000103 ORTHO05D000049 9.5e-09 63.2 62 64.5
Nitab4.5_0025805g0010 Nicotiana tabacum HOM05D000103 ORTHO05D000049 9.5e-09 63.2 63 55.6
GSVIVG01034741001 Vitis vinifera HOM05D000103 ORTHO05D000049 9.5e-09 63.2 62 69.4
TWI53G1819 Tripterygium wilfordii HOM05D000103 ORTHO05D000049 1.2e-08 62.8 62 62.9
DCAR_015421 Daucus carota HOM05D000103 ORTHO05D000049 1.6e-08 62.4 58 55.2
HanXRQChr12g0368161 Helianthus annuus HOM05D000103 ORTHO05D000049 1.6e-08 62.4 61 60.7
Oeu060255.1 Olea europaea HOM05D000103 ORTHO05D000049 1.6e-08 62.4 45 66.7
Potri.006G115000 Populus trichocarpa HOM05D000103 ORTHO05D000049 1.6e-08 62.4 63 61.9
Eucgr.G02707 Eucalyptus grandis HOM05D000103 ORTHO05D000049 2.1e-08 62.0 69 56.5
FvH4_6g18150 Fragaria vesca HOM05D000103 ORTHO05D000049 2.1e-08 62.0 62 61.3
FAN14G2407 Fragaria x ananassa HOM05D000103 ORTHO05D000049 2.1e-08 62.0 62 61.3
Peaxi162Scf00244g01216 Petunia axillaris HOM05D000103 ORTHO05D000049 2.1e-08 62.0 71 54.9
Rhsim09G0143800 Rhododendron simsii HOM05D000103 ORTHO05D000049 2.1e-08 62.0 62 64.5
GSVIVG01034748001 Vitis vinifera HOM05D000103 ORTHO05D000049 2.1e-08 62.0 62 69.4
Haze_02584 Corylus avellana HOM05D000103 ORTHO05D000049 2.8e-08 61.6 62 64.5
Gohir.A05G395200 Gossypium hirsutum HOM05D000103 ORTHO05D000049 2.8e-08 61.6 72 55.6
Gohir.D04G019800 Gossypium hirsutum HOM05D000103 ORTHO05D000049 2.8e-08 61.6 72 55.6
Gorai.012G023600 Gossypium raimondii HOM05D000103 ORTHO05D000049 2.8e-08 61.6 72 55.6
Prupe.6G122100 Prunus persica HOM05D000103 ORTHO05D000049 2.8e-08 61.6 62 61.3
RcHm_v2.0_Chr5g0055111 Rosa chinensis HOM05D000103 ORTHO05D000049 2.8e-08 61.6 62 61.3
Sopen11g003170 Solanum pennellii HOM05D000103 ORTHO05D000049 2.8e-08 61.6 66 57.6
MSTRG.9107 Avicennia marina HOM05D000103 ORTHO05D000049 3.6e-08 61.2 68 57.4
Cfa020758 Carpinus fangiana HOM05D000103 ORTHO05D000049 3.6e-08 61.2 60 58.3
FvH4_3g29740 Fragaria vesca HOM05D000103 ORTHO05D000049 3.6e-08 61.2 62 61.3
FAN16G0724 Fragaria x ananassa HOM05D000103 ORTHO05D000049 3.6e-08 61.2 62 61.3
Sabra06G0089900 Salix brachista HOM05D000103 ORTHO05D000049 3.6e-08 61.2 63 61.9
Solyc11g007280.3 Solanum lycopersicum HOM05D000103 ORTHO05D000049 3.6e-08 61.2 66 56.1
Atru.chr8.1606 Acer truncatum HOM05D000103 ORTHO05D000049 4.7e-08 60.8 62 64.5
FvH4_3g29710 Fragaria vesca HOM05D000103 ORTHO05D000049 4.7e-08 60.8 62 59.7
FAN05G3743 Fragaria x ananassa HOM05D000103 ORTHO05D000049 4.7e-08 60.8 62 59.7
FAN11G1485 Fragaria x ananassa HOM05D000103 ORTHO05D000049 4.7e-08 60.8 62 59.7
FAN16G3329 Fragaria x ananassa HOM05D000103 ORTHO05D000049 4.7e-08 60.8 62 59.7
FAN21G3842 Fragaria x ananassa HOM05D000103 ORTHO05D000049 4.7e-08 60.8 62 59.7
FAN25G1577 Fragaria x ananassa HOM05D000103 ORTHO05D000049 4.7e-08 60.8 62 59.7
RcHm_v2.0_Chr5g0055091 Rosa chinensis HOM05D000103 ORTHO05D000049 4.7e-08 60.8 62 59.7
CiPaw.10G006800 Carya illinoinensis HOM05D000103 ORTHO05D000049 6.2e-08 60.5 60 58.3
FvH4_3g29781 Fragaria vesca HOM05D000103 ORTHO05D000049 6.2e-08 60.5 59 62.7
Prupe.2G084300 Prunus persica HOM05D000103 ORTHO05D000049 6.2e-08 60.5 63 61.9
SGA_v2.0_scaffold13G06496 Striga asiatica HOM05D000103 ORTHO05D000049 8.1e-08 60.1 47 66.0
vmacro10282 Vaccinium macrocarpon HOM05D000103 ORTHO05D000049 8.1e-08 60.1 64 62.5
FAN05G5465 Fragaria x ananassa HOM05D000103 ORTHO05D000049 1.1e-07 59.7 62 59.7
Gorai.006G157100 Gossypium raimondii HOM05D000103 ORTHO05D000049 1.1e-07 59.7 60 56.7
Gorai.006G157200 Gossypium raimondii HOM05D000103 ORTHO05D000049 1.1e-07 59.7 60 56.7
HanXRQChr11g0321251 Helianthus annuus HOM05D000103 ORTHO05D000049 1.1e-07 59.7 81 45.7
FAN21G0401 Fragaria x ananassa HOM05D000103 ORTHO05D000049 1.4e-07 59.3 58 60.3
PGR142G3037 Punica granatum HOM05D000103 ORTHO05D000049 1.4e-07 59.3 71 54.9
RcHm_v2.0_Chr3g0472451 Rosa chinensis HOM05D000103 ORTHO05D000049 1.4e-07 59.3 62 59.7
Solyc11g007300.2 Solanum lycopersicum HOM05D000103 ORTHO05D000049 1.4e-07 59.3 62 56.5
CiPaw.13G139800 Carya illinoinensis HOM05D000103 ORTHO05D000049 1.8e-07 58.9 61 59.0
FAN16G1541 Fragaria x ananassa HOM05D000103 ORTHO05D000049 1.8e-07 58.9 59 59.3
MD03G1137000 Malus domestica HOM05D000103 ORTHO05D000049 1.8e-07 58.9 60 63.3
GSVIVG01031378001 Vitis vinifera HOM05D000103 ORTHO05D000049 1.8e-07 58.9 61 63.9
FAN09G4677 Fragaria x ananassa HOM05D000103 ORTHO05D000049 2.4e-07 58.5 62 59.7
Nitab4.5_0010538g0010 Nicotiana tabacum HOM05D000103 ORTHO05D000049 2.4e-07 58.5 63 52.4
Actinidia05447 Actinidia chinensis HOM05D000103 ORTHO05D000049 3.1e-07 58.2 64 56.2
CAN.G534.12 Capsicum annuum HOM05D000103 ORTHO05D000049 3.1e-07 58.2 53 60.4
Gohir.A09G137700 Gossypium hirsutum HOM05D000103 ORTHO05D000049 3.1e-07 58.2 60 56.7
Peaxi162Scf00004g00036 Petunia axillaris HOM05D000103 ORTHO05D000049 3.1e-07 58.2 66 47.0
PGSC0003DMG400023388 Solanum tuberosum HOM05D000103 ORTHO05D000049 3.1e-07 58.2 60 48.3
Eucgr.J00454 Eucalyptus grandis HOM05D000103 ORTHO05D000049 4.0e-07 57.8 61 59.0
FAN17G0459 Fragaria x ananassa HOM05D000103 ORTHO05D000049 4.0e-07 57.8 62 59.7
FAN25G2579 Fragaria x ananassa HOM05D000103 ORTHO05D000049 4.0e-07 57.8 59 59.3
MD12G1020800 Malus domestica HOM05D000103 ORTHO05D000049 4.0e-07 57.8 62 59.7
Haze_19563 Corylus avellana HOM05D000103 ORTHO05D000049 5.2e-07 57.4 60 55.0
Hma1.2p1_0084F.1_g043410 Hydrangea macrophylla HOM05D000103 ORTHO05D000049 5.2e-07 57.4 63 55.6
PSO443G0054 Papaver somniferum HOM05D000103 ORTHO05D000049 5.2e-07 57.4 55 52.7
CSS0001133 Camellia sinensis var. sinensis HOM05D000103 ORTHO05D000049 6.8e-07 57.0 69 53.6
FvH4_3g29760 Fragaria vesca HOM05D000103 ORTHO05D000049 6.8e-07 57.0 62 58.1
FAN16G1808 Fragaria x ananassa HOM05D000103 ORTHO05D000049 6.8e-07 57.0 62 58.1
FAN21G1910 Fragaria x ananassa HOM05D000103 ORTHO05D000049 6.8e-07 57.0 62 58.1
FAN25G1030 Fragaria x ananassa HOM05D000103 ORTHO05D000049 6.8e-07 57.0 62 58.1
RcHm_v2.0_Chr5g0055121 Rosa chinensis HOM05D000103 ORTHO05D000049 6.8e-07 57.0 62 58.1
CAN.G534.10 Capsicum annuum HOM05D000103 ORTHO05D000049 8.9e-07 56.6 67 59.7
ECA238G0934 Erigeron canadensis HOM05D000103 ORTHO05D000049 8.9e-07 56.6 65 53.8
vmacro10292 Vaccinium macrocarpon HOM05D000103 ORTHO05D000049 8.9e-07 56.6 67 58.2
CAN.G566.23 Capsicum annuum HOM05D000103 ORTHO05D012838 1.2e-06 56.2 40 57.5
PGR142G1460 Punica granatum HOM05D000103 ORTHO05D000049 1.2e-06 56.2 64 62.5
Eucgr.J00449 Eucalyptus grandis HOM05D000103 ORTHO05D000049 1.5e-06 55.8 61 57.4
Eucgr.J00451 Eucalyptus grandis HOM05D000103 ORTHO05D000049 1.5e-06 55.8 61 57.4
Gohir.A05G288600 Gossypium hirsutum HOM05D000103 ORTHO05D000049 1.5e-06 55.8 85 49.4
QL03p030592 Quercus lobata HOM05D000103 ORTHO05D000049 2.0e-06 55.5 59 54.2
GSVIVG01036184001 Vitis vinifera HOM05D000103 ORTHO05D000049 2.0e-06 55.5 61 62.3
PGR119G0083 Punica granatum HOM05D000103 ORTHO05D000049 2.6e-06 55.1 65 55.4
Rhsim03G0078700 Rhododendron simsii HOM05D000103 ORTHO05D000049 2.6e-06 55.1 66 57.6
Gohir.D05G289900 Gossypium hirsutum HOM05D000103 ORTHO05D000049 3.4e-06 54.7 85 48.2
SGA_v2.0_scaffold13G06495 Striga asiatica HOM05D000103 ORTHO05D000049 3.4e-06 54.7 47 59.6
Thecc.09G289600 Theobroma cacao HOM05D000103 ORTHO05D000049 3.4e-06 54.7 62 53.2
COL.COLO4_20100 Corchorus olitorius HOM05D000103 ORTHO05D000049 4.4e-06 54.3 66 54.5
Duzib093G1150 Durio zibethinus HOM05D000103 ORTHO05D000049 4.4e-06 54.3 62 59.7
Eucgr.A01530 Eucalyptus grandis HOM05D000103 ORTHO05D000049 4.4e-06 54.3 68 55.9
Lsat_1_v5_gn_2_104861 Lactuca sativa HOM05D000103 ORTHO05D000049 4.4e-06 54.3 58 65.5
QL01p013408 Quercus lobata HOM05D000103 ORTHO05D000049 4.4e-06 54.3 60 58.3
CANSAT54G0630 Cannabis sativa HOM05D000103 ORTHO05D000049 5.8e-06 53.9 63 52.4
Sopen11g003190 Solanum pennellii HOM05D000103 ORTHO05D000049 5.8e-06 53.9 62 51.6
PGSC0003DMG400019478 Solanum tuberosum HOM05D000103 ORTHO05D000049 5.8e-06 53.9 62 51.6
vmacro03288 Vaccinium macrocarpon HOM05D000103 ORTHO05D000049 5.8e-06 53.9 63 55.6
Ciclev10010901m.g Citrus clementina HOM05D000103 ORTHO05D000049 7.6e-06 53.5 61 60.7
Phvul.007G104000 Phaseolus vulgaris HOM05D000103 ORTHO05D000049 7.6e-06 53.5 62 56.5
Duzib170G0003 Durio zibethinus HOM05D000103 ORTHO05D000049 9.9e-06 53.1 62 53.2
Gorai.009G304900 Gossypium raimondii HOM05D000103 ORTHO05D000049 9.9e-06 53.1 85 48.2


User provided reference genes

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