Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 1.2e-283 979.2 480 100.0
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 2.7e-208 728.8 487 74.7
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 1.2e-195 686.8 489 69.7
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 8.5e-194 680.6 492 70.1
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 2.5e-193 679.1 492 69.9
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 1.7e-186 656.4 491 68.0
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 2.8e-184 649.0 489 65.8
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 6.1e-184 647.9 489 66.1
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 2.3e-183 646.0 490 67.3
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 1.2e-182 643.7 468 67.5
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 1.3e-181 640.2 489 66.9
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 4.9e-181 638.3 489 65.4
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 7.0e-180 634.4 500 63.4
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 2.0e-179 632.9 489 66.1
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 4.5e-179 631.7 468 67.1
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 7.8e-179 630.9 557 61.0
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 1.0e-178 630.6 492 65.9
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 2.3e-178 629.4 469 68.0
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 5.0e-178 628.2 472 67.4
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 5.0e-178 628.2 491 64.2
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 2.8e-176 622.5 501 62.9
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 5.2e-175 618.2 477 66.2
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 6.8e-175 617.8 477 65.6
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 8.9e-175 617.5 467 67.0
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 2.0e-174 616.3 490 65.1
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 2.6e-174 615.9 477 65.4
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 3.7e-173 612.1 495 63.4
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 1.7e-170 603.2 474 64.1
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 6.6e-170 601.3 488 62.9
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 1.2e-168 597.0 467 65.3
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 6.8e-167 591.3 444 66.4
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 2.0e-166 589.7 446 65.5
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 4.4e-166 588.6 485 63.3
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 4.4e-166 588.6 488 62.7
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 9.8e-166 587.4 485 63.1
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 2.2e-165 586.3 447 65.5
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 2.9e-165 585.9 488 61.3
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 3.7e-165 585.5 487 62.8
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 8.3e-165 584.3 488 60.5
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 2.4e-164 582.8 487 60.4
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 3.2e-164 582.4 455 64.8
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 3.2e-164 582.4 474 62.4
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 5.4e-164 581.6 488 60.2
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 1.6e-163 580.1 486 60.9
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 2.7e-163 579.3 472 60.8
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 6.0e-163 578.2 472 60.8
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 1.7e-162 576.6 400 70.0
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 2.3e-162 576.2 489 60.5
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 2.3e-162 576.2 489 60.5
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 5.1e-162 575.1 479 62.2
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 6.6e-162 574.7 561 56.1
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 1.1e-161 573.9 486 59.9
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 1.5e-161 573.5 438 64.6
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 5.6e-161 571.6 399 70.7
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 1.2e-160 570.5 489 60.7
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 2.8e-160 569.3 496 61.5
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 4.7e-160 568.5 486 59.7
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 4.7e-160 568.5 459 62.3
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 4.7e-160 568.5 489 60.1
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 1.4e-159 567.0 489 59.1
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 9.9e-158 560.8 454 61.0
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.3e-157 560.5 500 59.2
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 1.7e-157 560.1 393 68.4
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 1.7e-157 560.1 406 68.7
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 2.2e-157 559.7 399 69.2
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 2.2e-157 559.7 406 68.7
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 2.9e-157 559.3 505 59.0
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 6.4e-157 558.1 460 63.3
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 1.1e-156 557.4 459 60.1
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 3.2e-156 555.8 395 67.6
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 1.6e-155 553.5 402 68.4
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 2.7e-155 552.7 465 61.5
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 1.3e-154 550.4 484 57.0
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 1.3e-154 550.4 457 60.0
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 3.0e-154 549.3 474 59.9
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 8.6e-154 547.7 509 57.2
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 1.9e-153 546.6 485 57.9
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 5.6e-153 545.0 501 57.7
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 1.6e-152 543.5 459 60.8
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 1.6e-152 543.5 506 57.9
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 1.8e-151 540.0 499 56.9
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 2.4e-151 539.7 482 56.6
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 3.1e-151 539.3 443 62.1
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 8.9e-151 537.7 400 64.8
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 8.9e-151 537.7 445 60.2
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 1.5e-150 537.0 470 59.6
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 2.0e-150 536.6 741 43.2
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 9.9e-150 534.3 524 55.9
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 1.7e-149 533.5 398 65.6
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 2.2e-149 533.1 400 67.8
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 2.9e-149 532.7 485 57.3
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 2.4e-148 529.6 482 55.8
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 6.0e-147 525.0 620 49.7
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 1.3e-146 523.9 400 65.0
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 1.7e-146 523.5 413 64.2
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 7.3e-145 518.1 490 55.3
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 9.6e-145 517.7 484 54.5
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 1.6e-144 516.9 486 55.3
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 2.8e-144 516.2 487 55.0
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 2.4e-143 513.1 423 59.8
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 2.0e-142 510.0 425 61.9
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 7.6e-142 508.1 424 60.8
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 4.9e-141 505.4 421 62.9
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 6.4e-141 505.0 384 63.0
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 8.4e-141 504.6 425 61.9
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 3.2e-140 502.7 426 58.7
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 5.4e-140 501.9 459 56.9
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 5.4e-140 501.9 425 60.7
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 7.1e-140 501.5 446 55.6
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 7.1e-140 501.5 492 54.1
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 9.3e-140 501.1 426 58.7
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 9.3e-140 501.1 426 58.7
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 9.3e-140 501.1 429 59.0
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 1.2e-139 500.7 399 61.7
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 1.2e-139 500.7 495 55.4
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 4.6e-139 498.8 468 55.1
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 6.0e-139 498.4 408 62.3
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 7.9e-139 498.0 471 55.6
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 1.7e-138 496.9 485 54.2
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 3.0e-138 496.1 399 61.2
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 5.1e-138 495.4 398 59.5
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 1.9e-137 493.4 398 60.3
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 2.5e-137 493.0 454 56.2
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 2.5e-137 493.0 454 56.2
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 2.5e-137 493.0 454 56.2
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 3.3e-137 492.7 317 76.0
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 4.3e-137 492.3 456 55.7
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 5.6e-137 491.9 411 59.1
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 9.6e-137 491.1 426 58.2
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 8.1e-136 488.0 455 56.3
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 8.1e-136 488.0 484 53.9
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 1.1e-135 487.6 427 58.1
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 1.1e-135 487.6 455 56.3
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 1.8e-135 486.9 398 60.6
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 2.4e-135 486.5 433 57.3
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 6.9e-135 485.0 405 61.7
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 1.0e-130 471.1 471 52.4
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 2.3e-130 469.9 359 64.3
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 1.3e-128 464.2 352 64.8
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 1.7e-125 453.8 364 61.3
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 4.9e-125 452.2 342 67.0
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 8.2e-120 434.9 396 54.3
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 4.5e-118 429.1 311 65.9
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 1.1e-111 407.9 403 51.4
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 5.0e-109 399.1 396 49.2
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 5.3e-103 379.0 375 52.3
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 4.7e-99 365.9 324 60.5
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 5.0e-93 345.9 257 68.1
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 5.9e-86 322.4 229 70.7
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 3.2e-84 316.6 223 71.3
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 1.2e-75 288.1 279 56.3
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 1.3e-72 278.1 201 65.2
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 8.3e-72 275.4 215 61.4
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 5.0e-61 239.6 311 43.4
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 8.6e-61 238.8 241 51.9
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.1e-60 238.4 414 42.3
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 1.4e-55 221.5 276 45.7
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 4.1e-47 193.4 482 31.7
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 1.2e-38 165.2 263 42.2
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 1.1e-34 152.1 139 57.6
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 5.2e-34 149.8 157 51.6
Actinidia03477 Actinidia chinensis HOM05D004013 ORTHO05D004710 4.9e-32 143.3 137 59.9
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 5.4e-31 139.8 286 31.5
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 7.8e-30 136.0 116 59.5
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 7.3e-28 129.4 121 57.9
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 8.4e-24 115.9 92 60.9
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 3.6e-19 100.5 121 47.9
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 6.2e-19 99.8 202 32.7
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.8e-13 81.6 97 48.5
Atru.chr3.2624 Acer truncatum HOM05D004013 ORTHO05D004710 3.0e-13 80.9 236 32.6
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 5.6e-12 76.6 332 25.6
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 1.1e-10 72.4 83 47.0
ATR0807G053 Amborella trichopoda HOM05D004013 ORTHO05D004710 5.8e-09 66.6 47 61.7


User provided reference genes

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