Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3C413T4 Lonicera japonica HOM05D002724 ORTHO05D233928 1.5e-39 165.6 80 100.0
PSO210G5715 Papaver somniferum HOM05D002724 ORTHO05D002995 2.6e-10 68.6 39 89.7
PSO832G3329 Papaver somniferum HOM05D002724 ORTHO05D002995 2.6e-10 68.6 39 89.7
CSS0016915 Camellia sinensis var. sinensis HOM05D002724 ORTHO05D002995 4.4e-10 67.8 39 89.7
vmacro11862 Vaccinium macrocarpon HOM05D002724 ORTHO05D002995 4.4e-10 67.8 39 89.7
Actinidia09684 Actinidia chinensis HOM05D002724 ORTHO05D002995 5.7e-10 67.4 39 89.7
Actinidia12808 Actinidia chinensis HOM05D002724 ORTHO05D002995 5.7e-10 67.4 39 89.7
Aqoxy4G00812 Aquilegia oxysepala HOM05D002724 ORTHO05D002995 5.7e-10 67.4 39 87.2
Aqoxy7G02579 Aquilegia oxysepala HOM05D002724 ORTHO05D002995 5.7e-10 67.4 39 87.2
CSS0027753 Camellia sinensis var. sinensis HOM05D002724 ORTHO05D002995 5.7e-10 67.4 39 89.7
HPP92_011522 Vanilla planifolia HOM05D002724 ORTHO05D002995 7.5e-10 67.0 39 84.6
ATR0737G106 Amborella trichopoda HOM05D002724 ORTHO05D002995 1.3e-09 66.2 39 82.1
Hma1.2p1_0885F.1_g232610 Hydrangea macrophylla HOM05D002724 ORTHO05D002995 1.3e-09 66.2 39 87.2
Nitab4.5_0000207g0120 Nicotiana tabacum HOM05D002724 ORTHO05D002995 1.3e-09 66.2 39 87.2
Nitab4.5_0002383g0080 Nicotiana tabacum HOM05D002724 ORTHO05D002995 1.3e-09 66.2 39 87.2
Peaxi162Scf00027g00235 Petunia axillaris HOM05D002724 ORTHO05D002995 1.3e-09 66.2 39 87.2
Zm00001eb293810 Zea mays HOM05D002724 ORTHO05D002995 1.3e-09 66.2 39 87.2
Actinidia39068 Actinidia chinensis HOM05D002724 ORTHO05D002995 1.7e-09 65.9 39 84.6
Lj8A156G76 Lonicera japonica HOM05D002724 ORTHO05D002995 1.7e-09 65.9 39 89.7
Oeu011340.2 Olea europaea HOM05D002724 ORTHO05D002995 1.7e-09 65.9 39 87.2
Rhsim06G0198500 Rhododendron simsii HOM05D002724 ORTHO05D002995 1.7e-09 65.9 39 84.6
TAR629G0183 Trochodendron aralioides HOM05D002724 ORTHO05D002995 1.7e-09 65.9 39 87.2
Solyc01g104920.3 Solanum lycopersicum HOM05D002724 ORTHO05D002995 2.8e-09 65.1 39 84.6
Sopen01g047430 Solanum pennellii HOM05D002724 ORTHO05D002995 2.8e-09 65.1 39 84.6
PGSC0003DMG402029739 Solanum tuberosum HOM05D002724 ORTHO05D002995 2.8e-09 65.1 39 84.6
Lj1C843T17 Lonicera japonica HOM05D002724 ORTHO05D002995 3.7e-09 64.7 39 87.2
Nn1g04091 Nelumbo nucifera HOM05D002724 ORTHO05D002995 3.7e-09 64.7 39 84.6
Rhsim04G0021300 Rhododendron simsii HOM05D002724 ORTHO05D002995 3.7e-09 64.7 38 86.8
TAR627G0194 Trochodendron aralioides HOM05D002724 ORTHO05D002995 3.7e-09 64.7 39 84.6
GSVIVG01014341001 Vitis vinifera HOM05D002724 ORTHO05D002995 3.7e-09 64.7 39 84.6
CAN.G199.6 Capsicum annuum HOM05D002724 ORTHO05D002995 4.8e-09 64.3 39 84.6
Oeu019327.1 Olea europaea HOM05D002724 ORTHO05D002995 4.8e-09 64.3 39 84.6
Cc05_g12070 Coffea canephora HOM05D002724 ORTHO05D002995 6.3e-09 63.9 39 82.1
HanXRQChr11g0328421 Helianthus annuus HOM05D002724 ORTHO05D002995 6.3e-09 63.9 39 84.6
Lsat_1_v5_gn_7_105121 Lactuca sativa HOM05D002724 ORTHO05D002995 6.3e-09 63.9 39 84.6
Os05g0519400 Oryza sativa ssp. japonica HOM05D002724 ORTHO05D002995 6.3e-09 63.9 39 82.1
Ca_18540_v3 Cicer arietinum L. HOM05D002724 ORTHO05D002995 8.2e-09 63.5 39 76.9
ECA236G0664 Erigeron canadensis HOM05D002724 ORTHO05D002995 8.2e-09 63.5 39 84.6
HanXRQChr15g0494651 Helianthus annuus HOM05D002724 ORTHO05D002995 8.2e-09 63.5 39 84.6
Psat7g113520 Pisum sativum HOM05D002724 ORTHO05D002995 8.2e-09 63.5 39 76.9
Potri.004G043900 Populus trichocarpa HOM05D002724 ORTHO05D002995 8.2e-09 63.5 39 82.1
Sabra04G0027100 Salix brachista HOM05D002724 ORTHO05D002995 8.2e-09 63.5 39 82.1
SEGI_14067 Sequoiadendron giganteum HOM05D002724 ORTHO05D002995 8.2e-09 63.5 39 79.5
AL6G48420 Arabidopsis lyrata HOM05D002724 ORTHO05D002995 1.1e-08 63.2 39 79.5
Carub.0006s3283 Capsella rubella HOM05D002724 ORTHO05D002995 1.1e-08 63.2 39 79.5
CARHR252620 Cardamine hirsuta HOM05D002724 ORTHO05D002995 1.1e-08 63.2 39 79.5
Cfa000464 Carpinus fangiana HOM05D002724 ORTHO05D002995 1.1e-08 63.2 39 79.5
COL.COLO4_31469 Corchorus olitorius HOM05D002724 ORTHO05D002995 1.1e-08 63.2 39 79.5
Haze_06453 Corylus avellana HOM05D002724 ORTHO05D002995 1.1e-08 63.2 39 79.5
Lalb_Chr09g0327631 Lupinus albus HOM05D002724 ORTHO05D002995 1.1e-08 63.2 39 76.9
MD05G1339600 Malus domestica HOM05D002724 ORTHO05D002995 1.1e-08 63.2 39 79.5
MD10G1294300 Malus domestica HOM05D002724 ORTHO05D002995 1.1e-08 63.2 39 79.5
QL05p060587 Quercus lobata HOM05D002724 ORTHO05D002995 1.1e-08 63.2 39 79.5
SalBow7G4564 Salvia bowleyana HOM05D002724 ORTHO05D002995 1.1e-08 63.2 39 82.1
TWI38G0591 Tripterygium wilfordii HOM05D002724 ORTHO05D002995 1.1e-08 63.2 39 79.5
vmacro09533 Vaccinium macrocarpon HOM05D002724 ORTHO05D002995 1.1e-08 63.2 39 79.5
AT4G04910 Arabidopsis thaliana HOM05D002724 ORTHO05D002995 1.4e-08 62.8 39 76.9
arahy.Tifrunner.gnm1.ann1.9ZT65R Arachis hypogaea HOM05D002724 ORTHO05D002995 1.4e-08 62.8 39 76.9
arahy.Tifrunner.gnm1.ann1.JB3DWX Arachis hypogaea HOM05D002724 ORTHO05D002995 1.4e-08 62.8 39 76.9
Cpa.g.sc27.27 Carica papaya HOM05D002724 ORTHO05D002995 1.4e-08 62.8 39 79.5
Duzib160G0569 Durio zibethinus HOM05D002724 ORTHO05D002995 1.4e-08 62.8 39 79.5
Migut.H01936 Erythranthe guttata HOM05D002724 ORTHO05D002995 1.4e-08 62.8 39 79.5
Gohir.A06G126900 Gossypium hirsutum HOM05D002724 ORTHO05D002995 1.4e-08 62.8 39 79.5
Gohir.A06G210200 Gossypium hirsutum HOM05D002724 ORTHO05D002995 1.4e-08 62.8 39 79.5
Gohir.D06G131800 Gossypium hirsutum HOM05D002724 ORTHO05D002995 1.4e-08 62.8 39 79.5
Gohir.D06G210800 Gossypium hirsutum HOM05D002724 ORTHO05D002995 1.4e-08 62.8 39 79.5
Gorai.010G153600 Gossypium raimondii HOM05D002724 ORTHO05D002995 1.4e-08 62.8 39 79.5
Gorai.010G255500 Gossypium raimondii HOM05D002724 ORTHO05D002995 1.4e-08 62.8 39 79.5
Lalb_Chr05g0218441 Lupinus albus HOM05D002724 ORTHO05D002995 1.4e-08 62.8 39 76.9
Manes.16G027900 Manihot esculenta HOM05D002724 ORTHO05D002995 1.4e-08 62.8 39 79.5
Phvul.002G228500 Phaseolus vulgaris HOM05D002724 ORTHO05D002995 1.4e-08 62.8 39 76.9
QL05p060484 Quercus lobata HOM05D002724 ORTHO05D002995 1.4e-08 62.8 39 79.5
QL05p060533 Quercus lobata HOM05D002724 ORTHO05D002995 1.4e-08 62.8 39 79.5
QL05p088131 Quercus lobata HOM05D000176 ORTHO05D000106 1.4e-08 62.8 39 79.5
Thecc.06G187300 Theobroma cacao HOM05D002724 ORTHO05D002995 1.4e-08 62.8 39 79.5
unitig_747.g22010 Utricularia gibba HOM05D002724 ORTHO05D002995 1.4e-08 62.8 39 76.9
VMungo0251G0637 Vigna mungo HOM05D002724 ORTHO05D002995 1.4e-08 62.8 39 76.9
MELO3C025549.2 Cucumis melo HOM05D002724 ORTHO05D002995 1.8e-08 62.4 39 82.1
CsaV3_1G017090 Cucumis sativus L. HOM05D002724 ORTHO05D002995 1.8e-08 62.4 39 82.1
DCAR_013103 Daucus carota HOM05D002724 ORTHO05D002995 1.8e-08 62.4 39 79.5
DCAR_019550 Daucus carota HOM05D002724 ORTHO05D002995 1.8e-08 62.4 39 79.5
Duzib192G0701 Durio zibethinus HOM05D002724 ORTHO05D002995 1.8e-08 62.4 39 76.9
FvH4_3g09180 Fragaria vesca HOM05D002724 ORTHO05D002995 1.8e-08 62.4 39 79.5
FAN11G1358 Fragaria x ananassa HOM05D002724 ORTHO05D002995 1.8e-08 62.4 39 79.5
FAN16G0141 Fragaria x ananassa HOM05D002724 ORTHO05D002995 1.8e-08 62.4 39 79.5
FAN21G2993 Fragaria x ananassa HOM05D002724 ORTHO05D002995 1.8e-08 62.4 39 79.5
Potri.011G052800 Populus trichocarpa HOM05D002724 ORTHO05D002995 1.8e-08 62.4 39 79.5
RcHm_v2.0_Chr5g0005931 Rosa chinensis HOM05D002724 ORTHO05D002995 1.8e-08 62.4 39 79.5
RcHm_v2.0_Chr5g0008441 Rosa chinensis HOM05D002724 ORTHO05D002995 1.8e-08 62.4 39 79.5
Sabra11G0036700 Salix brachista HOM05D002724 ORTHO05D002995 1.8e-08 62.4 39 79.5
Sc03g0009950 Simmondsia chinensis HOM05D002724 ORTHO05D002995 1.8e-08 62.4 39 82.1
Atru.chr12.2148 Acer truncatum HOM05D002724 ORTHO05D002995 2.4e-08 62.0 39 79.5
FvH4_4g01380 Fragaria vesca HOM05D002724 ORTHO05D002995 2.4e-08 62.0 39 79.5
Lj4g0025106 Lotus japonicus HOM05D002724 ORTHO05D002995 2.4e-08 62.0 39 74.4
MBI07_g30175_MAGBIO Magnolia biondii HOM05D002724 ORTHO05D002995 2.4e-08 62.0 39 76.9
Medtr4g088885 Medicago truncatula HOM05D002724 ORTHO05D002995 2.4e-08 62.0 39 76.9
Prupe.4G047600 Prunus persica HOM05D002724 ORTHO05D002995 2.4e-08 62.0 39 76.9
SGA_v2.0_scaffold4G02196 Striga asiatica HOM05D002724 ORTHO05D002995 2.4e-08 62.0 39 79.5
Aa31LG9G9580 Aethionema arabicum HOM05D002724 ORTHO05D002995 3.1e-08 61.6 39 79.5
BcaB01g01846 Brassica carinata HOM05D002724 ORTHO05D002995 3.1e-08 61.6 39 76.9
BcaC04g21344 Brassica carinata HOM05D002724 ORTHO05D002995 3.1e-08 61.6 39 76.9
A09p26000 Brassica napus HOM05D002724 ORTHO05D002995 3.1e-08 61.6 39 76.9
C09p32960 Brassica napus HOM05D002724 ORTHO05D002995 3.1e-08 61.6 39 76.9
BolC9t56131H Brassica oleracea HOM05D002724 ORTHO05D002995 3.1e-08 61.6 39 76.9
BraA09t38166Z Brassica rapa HOM05D002724 ORTHO05D002995 3.1e-08 61.6 39 76.9
CDE08G0699 Ceratophyllum demersum HOM05D002724 ORTHO05D002995 3.1e-08 61.6 39 76.9
Eucgr.E03294 Eucalyptus grandis HOM05D002724 ORTHO05D002995 3.1e-08 61.6 39 76.9
SEGI_05908 Sequoiadendron giganteum HOM05D002724 ORTHO05D002995 3.1e-08 61.6 39 76.9
BcaB05g23705 Brassica carinata HOM05D002724 ORTHO05D002995 4.1e-08 61.2 39 76.9
A03p30230 Brassica napus HOM05D002724 ORTHO05D002995 4.1e-08 61.2 39 76.9
C03p36480 Brassica napus HOM05D002724 ORTHO05D002995 4.1e-08 61.2 39 76.9
BolC3t15961H Brassica oleracea HOM05D002724 ORTHO05D002995 4.1e-08 61.2 39 76.9
BraA03t12207Z Brassica rapa HOM05D002724 ORTHO05D002995 4.1e-08 61.2 39 76.9
CANSAT35G0352 Cannabis sativa HOM05D002724 ORTHO05D002995 4.1e-08 61.2 39 76.9
Thhalv10028462m.g Eutrema salsugineum HOM05D002724 ORTHO05D002995 4.1e-08 61.2 39 76.9
Glyma.07G195900 Glycine max HOM05D002724 ORTHO05D002995 4.1e-08 61.2 39 74.4
Manes.17G045800 Manihot esculenta HOM05D002724 ORTHO05D002995 4.1e-08 61.2 39 76.9
Sp6g04050 Schrenkiella parvula HOM05D002724 ORTHO05D002995 4.1e-08 61.2 39 76.9
SpUn0051_0030 Schrenkiella parvula HOM05D002724 ORTHO05D002995 4.1e-08 61.2 39 76.9
SGA_v2.0_scaffold158G37495 Striga asiatica HOM05D002724 ORTHO05D002995 4.1e-08 61.2 39 79.5
THA.LOC104806293 Tarenaya hassleriana HOM05D002724 ORTHO05D002995 4.1e-08 61.2 39 76.9
MSTRG.12912 Avicennia marina HOM05D002724 ORTHO05D002995 5.3e-08 60.8 39 76.9
CiPaw.13G137300 Carya illinoinensis HOM05D002724 ORTHO05D002995 5.3e-08 60.8 39 76.9
Glyma.13G180100 Glycine max HOM05D002724 ORTHO05D002995 5.3e-08 60.8 39 71.8
EL10Ac4g08172 Beta vulgaris HOM05D002724 ORTHO05D002995 7.0e-08 60.5 39 79.5
AUR62004451 Chenopodium quinoa HOM05D002724 ORTHO05D002995 7.0e-08 60.5 39 79.5
AUR62034292 Chenopodium quinoa HOM05D002724 ORTHO05D002995 7.0e-08 60.5 39 79.5
Nn1g06543 Nelumbo nucifera HOM05D002724 ORTHO05D002995 7.0e-08 60.5 39 79.5
Ciclev10011146m.g Citrus clementina HOM05D002724 ORTHO05D002995 9.1e-08 60.1 39 76.9
FAN13G1355 Fragaria x ananassa HOM05D002724 ORTHO05D002995 9.1e-08 60.1 39 74.4
PGR004G1438 Punica granatum HOM05D002724 ORTHO05D002995 1.6e-07 59.3 39 71.8
Sed0008019 Sechium edule HOM05D002724 ORTHO05D002995 1.6e-07 59.3 39 79.5
Migut.H01935 Erythranthe guttata HOM05D002724 ORTHO05D002995 2.0e-07 58.9 39 74.4
Eucgr.E03103 Eucalyptus grandis HOM05D002724 ORTHO05D002995 3.5e-07 58.2 39 71.8
Eucgr.E03298 Eucalyptus grandis HOM05D002724 ORTHO05D002995 3.5e-07 58.2 39 71.8
Sc16g0006970 Simmondsia chinensis HOM05D002724 ORTHO05D002995 5.9e-07 57.4 39 74.4
CARHR228460 Cardamine hirsuta HOM05D002724 ORTHO05D002995 1.0e-06 56.6 39 69.2
Haze_06451 Corylus avellana HOM05D002724 ORTHO05D002995 1.0e-06 56.6 39 69.2
THA.LOC104812936 Tarenaya hassleriana HOM05D002724 ORTHO05D002995 1.0e-06 56.6 39 71.8
Ah.06g184140 Amaranthus hybridus HOM05D002724 ORTHO05D002995 1.3e-06 56.2 37 78.4
AL7G50070 Arabidopsis lyrata HOM05D002724 ORTHO05D002995 1.3e-06 56.2 39 69.2
Eucgr.E03297 Eucalyptus grandis HOM05D002724 ORTHO05D002995 3.8e-06 54.7 39 66.7
Sed0015434 Sechium edule HOM05D002724 ORTHO05D002995 3.8e-06 54.7 39 71.8


User provided reference genes

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