Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3C1010T10 Lonicera japonica HOM05D000115 ORTHO05D026883 1.8e-145 519.2 262 100.0
FAN14G2802 Fragaria x ananassa HOM05D000115 ORTHO05D005317 1.2e-56 224.2 291 50.2
FAN05G2006 Fragaria x ananassa HOM05D000115 ORTHO05D005317 1.9e-54 216.9 295 48.5
Haze_13473 Corylus avellana HOM05D000115 ORTHO05D005317 3.3e-54 216.1 285 46.7
FAN14G5116 Fragaria x ananassa HOM05D000115 ORTHO05D005317 3.3e-54 216.1 295 48.5
SGA_v2.0_scaffold9G04898 Striga asiatica HOM05D000115 ORTHO05D005317 3.3e-54 216.1 310 42.9
FAN09G3340 Fragaria x ananassa HOM05D000115 ORTHO05D005317 4.2e-54 215.7 295 47.5
Dinv12712 Davidia involucrata HOM05D000115 ORTHO05D005317 9.5e-54 214.5 292 45.5
Oeu013826.2 Olea europaea HOM05D000115 ORTHO05D005317 1.4e-52 210.7 306 48.4
Oeu032120.1 Olea europaea HOM05D000115 ORTHO05D005317 2.3e-52 209.9 292 46.9
Sabra14G0107000 Salix brachista HOM05D000115 ORTHO05D005317 1.2e-51 207.6 352 41.5
Ah.01g016030 Amaranthus hybridus HOM05D000115 ORTHO05D005317 1.5e-51 207.2 281 47.3
CSS0028049 Camellia sinensis var. sinensis HOM05D001875 ORTHO05D000106 2.6e-51 206.5 285 46.7
Lsat_1_v5_gn_3_36161 Lactuca sativa HOM05D000115 ORTHO05D005317 9.8e-51 204.5 278 45.7
COL.COLO4_33710 Corchorus olitorius HOM05D000115 ORTHO05D005317 2.2e-50 203.4 322 41.9
Cc05_g09190 Coffea canephora HOM05D000115 ORTHO05D005317 8.3e-50 201.4 283 43.5
CiPaw.03G188000 Carya illinoinensis HOM05D000115 ORTHO05D005317 3.2e-49 199.5 292 42.8
Oeu026480.1 Olea europaea HOM05D000115 ORTHO05D005317 3.2e-49 199.5 293 46.1
Prupe.3G168900 Prunus persica HOM05D000115 ORTHO05D005317 5.4e-49 198.7 300 44.7
MELO3C014459.2 Cucumis melo HOM05D000115 ORTHO05D005317 1.2e-48 197.6 283 43.8
Lsat_1_v5_gn_8_32001 Lactuca sativa HOM05D000115 ORTHO05D005317 1.2e-48 197.6 279 44.4
Lalb_Chr20g0114141 Lupinus albus HOM05D000115 ORTHO05D005317 1.2e-48 197.6 289 45.7
TAR626G1968 Trochodendron aralioides HOM05D000115 ORTHO05D005317 1.2e-48 197.6 292 43.8
Ah.01g004800 Amaranthus hybridus HOM05D000115 ORTHO05D005317 1.6e-48 197.2 279 44.8
ClCG02G018280 Citrullus lanatus HOM05D000115 ORTHO05D005317 2.7e-48 196.4 285 44.6
EL10Ac9g21017 Beta vulgaris HOM05D000115 ORTHO05D005317 3.5e-48 196.1 281 43.8
CsaV3_6G037960 Cucumis sativus L. HOM05D000115 ORTHO05D005317 4.5e-48 195.7 283 43.1
Medtr3g452710 Medicago truncatula HOM05D000115 ORTHO05D005317 5.9e-48 195.3 286 44.1
CAN.G1481.9 Capsicum annuum HOM05D000115 ORTHO05D005317 7.8e-48 194.9 293 44.7
PGSC0003DMG400017340 Solanum tuberosum HOM05D000115 ORTHO05D005317 1.0e-47 194.5 297 44.4
Atru.chr6.3552 Acer truncatum HOM05D000115 ORTHO05D005317 1.3e-47 194.1 294 43.5
ClCG09G022290 Citrullus lanatus HOM05D000115 ORTHO05D005317 2.3e-47 193.4 283 43.1
Cfa022004 Carpinus fangiana HOM05D000115 ORTHO05D005317 2.9e-47 193.0 292 43.2
HPP92_021772 Vanilla planifolia HOM05D000115 ORTHO05D005317 6.6e-47 191.8 288 43.1
HanXRQChr17g0541261 Helianthus annuus HOM05D000115 ORTHO05D005317 8.6e-47 191.4 288 42.4
arahy.Tifrunner.gnm1.ann1.LX1LZF Arachis hypogaea HOM05D000115 ORTHO05D005317 1.5e-46 190.7 295 44.1
Lj6g0018112 Lotus japonicus HOM05D000115 ORTHO05D005317 2.5e-46 189.9 289 43.3
Rhsim06G0121700 Rhododendron simsii HOM05D000115 ORTHO05D005317 2.5e-46 189.9 343 39.9
Aa31LG1G24560 Aethionema arabicum HOM05D000115 ORTHO05D005317 7.3e-46 188.3 292 43.8
Actinidia11189 Actinidia chinensis HOM05D000115 ORTHO05D005317 9.5e-46 188.0 293 42.7
MD17G1142100 Malus domestica HOM05D000115 ORTHO05D005317 9.5e-46 188.0 292 41.1
Peaxi162Scf00154g00714 Petunia axillaris HOM05D000115 ORTHO05D005317 9.5e-46 188.0 288 43.1
A05p03220 Brassica napus HOM05D000115 ORTHO05D005317 1.2e-45 187.6 288 42.4
BraA05t19312Z Brassica rapa HOM05D000115 ORTHO05D005317 1.2e-45 187.6 288 42.4
AUR62024011 Chenopodium quinoa HOM05D000115 ORTHO05D005317 1.2e-45 187.6 288 42.0
Potri.014G141800 Populus trichocarpa HOM05D000115 ORTHO05D005317 1.2e-45 187.6 292 41.8
Sed0025939 Sechium edule HOM05D000115 ORTHO05D005317 1.6e-45 187.2 296 41.6
Psat5g183840 Pisum sativum HOM05D000115 ORTHO05D005317 2.8e-45 186.4 293 43.0
Hma1.2p1_0178F.1_g078130 Hydrangea macrophylla HOM05D000115 ORTHO05D005317 3.6e-45 186.0 296 42.9
CANSAT64G1624 Cannabis sativa HOM05D000115 ORTHO05D005317 4.7e-45 185.7 294 43.2
Aqoxy1G01905 Aquilegia oxysepala HOM05D000115 ORTHO05D005317 8.0e-45 184.9 292 44.2
HanXRQChr06g0170821 Helianthus annuus HOM05D000115 ORTHO05D005317 8.0e-45 184.9 287 41.5
Sopen07g029230 Solanum pennellii HOM05D000115 ORTHO05D005317 8.0e-45 184.9 292 42.1
Ca_14623_v3 Cicer arietinum L. HOM05D000115 ORTHO05D005317 1.0e-44 184.5 292 41.1
MD09G1156000 Malus domestica HOM05D000115 ORTHO05D005317 1.0e-44 184.5 292 40.8
Nitab4.5_0001121g0140 Nicotiana tabacum HOM05D000115 ORTHO05D005317 1.0e-44 184.5 292 41.4
SalBow7G3865 Salvia bowleyana HOM05D000115 ORTHO05D005317 1.0e-44 184.5 316 38.9
arahy.Tifrunner.gnm1.ann1.I1PD8T Arachis hypogaea HOM05D000115 ORTHO05D005317 1.4e-44 184.1 311 43.1
C04p03870 Brassica napus HOM05D000115 ORTHO05D005317 1.4e-44 184.1 287 41.8
BolC4t22023H Brassica oleracea HOM05D000115 ORTHO05D005317 1.4e-44 184.1 287 41.8
FvH4_6g37780 Fragaria vesca HOM05D000115 ORTHO05D005317 1.8e-44 183.7 292 42.1
Manes.01G128800 Manihot esculenta HOM05D000115 ORTHO05D005317 3.1e-44 183.0 292 41.8
BolC4t28491H Brassica oleracea HOM05D000115 ORTHO05D005317 4.0e-44 182.6 291 42.3
A04p32400 Brassica napus HOM05D000115 ORTHO05D005317 5.2e-44 182.2 291 42.6
Duzib264G0129 Durio zibethinus HOM05D000115 ORTHO05D005317 5.2e-44 182.2 288 42.7
Nitab4.5_0002737g0050 Nicotiana tabacum HOM05D000115 ORTHO05D005317 6.8e-44 181.8 272 41.9
PGR042G1481 Punica granatum HOM05D000115 ORTHO05D005317 6.8e-44 181.8 291 41.9
RcHm_v2.0_Chr2g0150851 Rosa chinensis HOM05D000115 ORTHO05D005317 6.8e-44 181.8 288 42.7
ATR0602G177 Amborella trichopoda HOM05D000115 ORTHO05D005317 8.9e-44 181.4 288 41.3
Cpa.g.sc50.66 Carica papaya HOM05D000115 ORTHO05D005317 8.9e-44 181.4 273 44.0
DCAR_013303 Daucus carota HOM05D000115 ORTHO05D005317 8.9e-44 181.4 292 43.5
BraA04t18693Z Brassica rapa HOM05D000115 ORTHO05D005317 1.5e-43 180.6 290 42.4
Gorai.001G079700 Gossypium raimondii HOM05D000115 ORTHO05D005317 2.0e-43 180.3 289 42.2
Nn3g20994 Nelumbo nucifera HOM05D000115 ORTHO05D005317 2.6e-43 179.9 291 41.9
C04p69920 Brassica napus HOM05D000115 ORTHO05D005317 3.4e-43 179.5 291 41.9
Thecc.01G159200 Theobroma cacao HOM05D000115 ORTHO05D005317 4.4e-43 179.1 288 41.3
TPR.G1867 Trifolium pratense HOM05D000115 ORTHO05D005317 4.4e-43 179.1 286 40.9
arahy.Tifrunner.gnm1.ann1.F88V81 Arachis hypogaea HOM05D000115 ORTHO05D005317 5.8e-43 178.7 292 40.8
Glyma.08G311000 Glycine max HOM05D000115 ORTHO05D005317 5.8e-43 178.7 292 40.4
AT2G42810 Arabidopsis thaliana HOM05D000115 ORTHO05D005317 7.5e-43 178.3 290 41.0
TWI59G1105 Tripterygium wilfordii HOM05D000115 ORTHO05D005317 7.5e-43 178.3 303 41.9
Lj1A585G39 Lonicera japonica HOM05D000115 ORTHO05D005317 9.8e-43 177.9 274 43.1
MSTRG.15059 Avicennia marina HOM05D000115 ORTHO05D005317 1.7e-42 177.2 288 41.0
Duzib187G1471 Durio zibethinus HOM05D000115 ORTHO05D005317 1.7e-42 177.2 288 41.3
Gohir.A10G100700 Gossypium hirsutum HOM05D000115 ORTHO05D005317 1.7e-42 177.2 287 42.2
Eucgr.A01959 Eucalyptus grandis HOM05D000115 ORTHO05D005317 2.2e-42 176.8 288 39.2
Gohir.D07G075500 Gossypium hirsutum HOM05D000115 ORTHO05D005317 2.9e-42 176.4 288 40.6
ECA246G1880 Erigeron canadensis HOM05D000115 ORTHO05D005317 3.7e-42 176.0 292 40.1
Gohir.A07G070900 Gossypium hirsutum HOM05D000115 ORTHO05D005317 4.9e-42 175.6 288 40.6
Lalb_Chr10g0106801 Lupinus albus HOM05D000115 ORTHO05D005317 6.4e-42 175.3 292 40.4
Phvul.006G035200 Phaseolus vulgaris HOM05D000115 ORTHO05D005317 6.4e-42 175.3 292 42.1
BcaB06g29264 Brassica carinata HOM05D000115 ORTHO05D005317 1.4e-41 174.1 288 40.3
Gohir.D10G088200 Gossypium hirsutum HOM05D000115 ORTHO05D005317 1.4e-41 174.1 287 41.5
SEGI_20856 Sequoiadendron giganteum HOM05D000115 ORTHO05D005317 1.4e-41 174.1 287 39.7
Gorai.011G097000 Gossypium raimondii HOM05D000115 ORTHO05D005317 2.4e-41 173.3 287 41.1
Lalb_Chr17g0348361 Lupinus albus HOM05D000115 ORTHO05D005317 2.4e-41 173.3 288 40.6
CSS0025244 Camellia sinensis var. sinensis HOM05D000115 ORTHO05D005317 7.0e-41 171.8 292 43.2
Sed0008288 Sechium edule HOM05D000115 ORTHO05D005317 1.2e-40 171.0 292 39.7
arahy.Tifrunner.gnm1.ann1.8KB6JI Arachis hypogaea HOM05D000115 ORTHO05D005317 1.6e-40 170.6 292 40.4
Glyma.18G104600 Glycine max HOM05D000115 ORTHO05D005317 1.6e-40 170.6 292 39.4
Zm00001eb283980 Zea mays HOM05D000115 ORTHO05D005317 1.6e-40 170.6 288 37.5
PSO675G6449 Papaver somniferum HOM05D000115 ORTHO05D005317 2.7e-40 169.9 283 41.0
Hund00828 Selenicereus undatus HOM05D000115 ORTHO05D005317 2.7e-40 169.9 289 41.9
Os05g0204900 Oryza sativa ssp. japonica HOM05D000115 ORTHO05D005317 3.5e-40 169.5 286 37.8
THA.LOC104803104 Tarenaya hassleriana HOM05D000115 ORTHO05D005317 4.6e-40 169.1 293 41.3
PSO541G0742 Papaver somniferum HOM05D000115 ORTHO05D005317 6.0e-40 168.7 283 40.6
Sp4g24930 Schrenkiella parvula HOM05D000115 ORTHO05D005317 1.3e-39 167.5 288 39.2
Actinidia04671 Actinidia chinensis HOM05D000115 ORTHO05D005317 3.9e-39 166.0 287 41.1
CDE02G1626 Ceratophyllum demersum HOM05D000115 ORTHO05D005317 3.9e-39 166.0 264 42.0
BcaC02g07219 Brassica carinata HOM05D000115 ORTHO05D005317 5.0e-39 165.6 288 38.9
AL4G41420 Arabidopsis lyrata HOM05D000115 ORTHO05D005317 6.6e-39 165.2 290 39.0
CARHR137890 Cardamine hirsuta HOM05D000115 ORTHO05D005317 8.6e-39 164.9 289 38.8
Thhalv10016582m.g Eutrema salsugineum HOM05D000115 ORTHO05D005317 1.5e-38 164.1 289 38.4
CSS0012954 Camellia sinensis var. sinensis HOM05D000115 ORTHO05D005317 1.9e-38 163.7 292 40.1
CDE06G1396 Ceratophyllum demersum HOM05D000115 ORTHO05D005317 9.5e-38 161.4 281 39.5
Migut.M00220 Erythranthe guttata HOM05D000115 ORTHO05D005317 2.8e-37 159.8 287 38.0
Carub.0004s2525 Capsella rubella HOM05D000115 ORTHO05D005317 6.2e-37 158.7 289 37.7
CsaV3_6G015680 Cucumis sativus L. HOM05D000115 ORTHO05D005317 1.4e-36 157.5 288 38.5
MELO3C019702.2 Cucumis melo HOM05D000115 ORTHO05D005317 1.8e-36 157.1 288 38.5
Pp3c7_11180 Physcomitrium patens HOM05D000115 ORTHO05D005317 2.6e-35 153.3 286 34.3
QL08p043628 Quercus lobata HOM05D000115 ORTHO05D005317 3.4e-35 152.9 454 30.4
vmacro12438 Vaccinium macrocarpon HOM05D000115 ORTHO05D005317 2.9e-34 149.8 200 48.0
SHI24462 Sapria himalayana HOM05D000115 ORTHO05D005317 4.9e-34 149.1 272 37.1
Pp3c11_17000 Physcomitrium patens HOM05D000115 ORTHO05D005317 6.4e-34 148.7 288 33.7
Mapoly0014s0155 Marchantia polymorpha HOM05D000115 ORTHO05D005317 4.1e-33 146.0 288 36.5
GSVIVG01000823001 Vitis vinifera HOM05D000115 ORTHO05D005317 1.2e-32 144.4 215 47.0
AUR62041331 Chenopodium quinoa HOM05D000115 ORTHO05D005317 1.6e-32 144.1 149 53.0
SMO301G0033 Selaginella moellendorffii HOM05D000115 ORTHO05D005317 5.2e-28 129.0 284 33.5
Sc12g0003720 Simmondsia chinensis HOM05D000115 ORTHO05D005317 5.8e-27 125.6 200 41.5
Manes.02G086700 Manihot esculenta HOM05D000115 ORTHO05D005317 9.9e-27 124.8 200 40.5
VMungo0540G0597 Vigna mungo HOM05D001206 ORTHO05D005935 8.3e-26 121.7 151 47.7
arahy.Tifrunner.gnm1.ann1.P96M7D Arachis hypogaea HOM05D000115 ORTHO05D026883 3.5e-24 116.3 183 41.5
CBR_g3721 Chara braunii HOM05D000115 ORTHO05D005317 4.3e-22 109.4 147 42.2
CSS0031690 Camellia sinensis var. sinensis HOM05D005920 ORTHO05D005317 1.1e-20 104.8 73 68.5
vmacro12439 Vaccinium macrocarpon HOM05D005920 ORTHO05D007211 2.0e-19 100.5 68 73.5
Ciclev10015499m.g Citrus clementina HOM05D000115 ORTHO05D005317 2.2e-18 97.1 67 71.6
arahy.Tifrunner.gnm1.ann1.URE1QT Arachis hypogaea HOM05D000115 ORTHO05D026883 4.2e-17 92.8 53 86.8
SHI23353 Sapria himalayana HOM05D000115 ORTHO05D005317 1.5e-14 84.3 188 32.4
AagrBONN_evm.TU.Sc2ySwM_117.3245 Anthoceros agrestis HOM05D000115 ORTHO05D005317 5.6e-14 82.4 287 26.1
Medtr2g100160 Medicago truncatula HOM05D000115 ORTHO05D005317 7.3e-14 82.0 55 70.9
PRCOL_00004674 Prasinoderma coloniale HOM05D000115 ORTHO05D005317 7.3e-14 82.0 146 37.7
Actinidia32526 Actinidia chinensis HOM05D000115 ORTHO05D056394 9.6e-14 81.6 59 69.5
SHI29318 Sapria himalayana HOM05D000115 ORTHO05D005317 3.6e-13 79.7 55 65.5
Medtr2g100130 Medicago truncatula HOM05D000115 ORTHO05D005317 4.0e-12 76.3 68 57.4
MCO11G918 Micromonas commoda HOM05D000115 ORTHO05D005317 6.9e-12 75.5 283 25.8
HanXRQChr12g0356211 Helianthus annuus HOM05D005920 ORTHO05D019809 9.0e-12 75.1 98 46.9
Cre07.g326800 Chlamydomonas reinhardtii HOM05D000115 ORTHO05D005317 2.0e-11 73.9 285 25.3
Gohir.A01G190800 Gossypium hirsutum HOM05D001271 ORTHO05D007211 3.4e-11 73.2 51 64.7
Gohir.A02G136701 Gossypium hirsutum HOM05D000115 ORTHO05D019809 3.4e-11 73.2 52 65.4
Solyc07g055860.4 Solanum lycopersicum HOM05D000115 ORTHO05D005317 1.6e-08 64.3 34 88.2
MD12G1049700 Malus domestica HOM05D000115 ORTHO05D005317 3.5e-08 63.2 43 69.8
Haze_26991 Corylus avellana HOM05D000115 ORTHO05D005317 1.7e-07 60.8 135 32.6
SHI31213 Sapria himalayana HOM05D000115 ORTHO05D005317 2.3e-07 60.5 38 71.1
CSS0010128 Camellia sinensis var. sinensis HOM05D000115 ORTHO05D005317 3.0e-07 60.1 34 85.3
arahy.Tifrunner.gnm1.ann1.DEU23A Arachis hypogaea HOM05D000115 ORTHO05D019809 1.5e-06 57.8 41 65.9
BcaC04g18743 Brassica carinata HOM05D000115 ORTHO05D005317 1.9e-06 57.4 54 50.0
BolC9t58756H Brassica oleracea HOM05D000115 ORTHO05D026883 1.9e-06 57.4 54 50.0
arahy.Tifrunner.gnm1.ann1.ZBU6CW Arachis hypogaea HOM05D033213 ORTHO05D086985 4.3e-06 56.2 46 60.9
C09p59110 Brassica napus HOM05D000115 ORTHO05D005317 4.3e-06 56.2 54 50.0
Gorai.007G325000 Gossypium raimondii HOM05D000115 ORTHO05D019809 7.3e-06 55.5 39 64.1
SHI15671 Sapria himalayana HOM05D000115 ORTHO05D005317 9.6e-06 55.1 70 42.9
SHI25960 Sapria himalayana HOM05D000360 ORTHO05D000234 9.6e-06 55.1 49 57.1


User provided reference genes

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