Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A998T32 Lonicera japonica HOM05D005183 ORTHO05D006684 2.2e-177 625.5 321 100.0
Dinv19828 Davidia involucrata HOM05D005183 ORTHO05D006684 4.7e-140 501.5 311 81.0
Oeu040539.1 Olea europaea HOM05D005183 ORTHO05D006684 2.6e-138 495.7 313 79.9
DCAR_029401 Daucus carota HOM05D005183 ORTHO05D006684 4.9e-137 491.5 312 78.5
DCAR_010653 Daucus carota HOM05D005183 ORTHO05D006684 6.4e-137 491.1 312 78.5
Lsat_1_v5_gn_4_35140 Lactuca sativa HOM05D005183 ORTHO05D006684 4.6e-135 485.0 290 83.4
Oeu013577.1 Olea europaea HOM05D005183 ORTHO05D006684 1.7e-134 483.0 313 78.0
Hma1.2p1_0611F.1_g188660 Hydrangea macrophylla HOM05D005183 ORTHO05D006684 1.6e-132 476.5 311 76.5
CSS0041546 Camellia sinensis var. sinensis HOM05D005183 ORTHO05D006684 4.8e-132 474.9 311 76.8
Actinidia10400 Actinidia chinensis HOM05D005183 ORTHO05D006684 8.1e-132 474.2 311 74.6
SGA_v2.0_scaffold40G15402 Striga asiatica HOM05D005183 ORTHO05D006684 6.9e-131 471.1 312 75.0
HanXRQChr02g0051911 Helianthus annuus HOM05D005183 ORTHO05D006684 1.2e-130 470.3 309 78.3
MSTRG.5807 Avicennia marina HOM05D005183 ORTHO05D006684 3.8e-129 465.3 314 74.2
HanXRQChr17g0545251 Helianthus annuus HOM05D005183 ORTHO05D006684 2.4e-128 462.6 309 77.3
SGA_v2.0_scaffold75G24795 Striga asiatica HOM05D005183 ORTHO05D006684 2.4e-128 462.6 312 73.4
Peaxi162Scf00110g02022 Petunia axillaris HOM05D005183 ORTHO05D006684 3.2e-128 462.2 312 74.4
GSVIVG01033782001 Vitis vinifera HOM05D005183 ORTHO05D006684 3.2e-128 462.2 313 73.2
ECA233G2114 Erigeron canadensis HOM05D005183 ORTHO05D006684 1.2e-127 460.3 286 80.4
PGSC0003DMG400028174 Solanum tuberosum HOM05D005183 ORTHO05D006684 2.7e-127 459.1 313 72.5
CAN.G1138.15 Capsicum annuum HOM05D005183 ORTHO05D006684 6.0e-127 458.0 308 73.4
Migut.J00983 Erythranthe guttata HOM05D005183 ORTHO05D006684 6.0e-127 458.0 311 73.0
Nn4g24833 Nelumbo nucifera HOM05D005183 ORTHO05D006684 1.3e-126 456.8 311 73.3
Solyc10g083600.2 Solanum lycopersicum HOM05D005183 ORTHO05D006684 1.3e-126 456.8 313 72.2
Cc09_g05380 Coffea canephora HOM05D005183 ORTHO05D006684 2.3e-126 456.1 311 72.3
Migut.N00918 Erythranthe guttata HOM05D005183 ORTHO05D006684 3.9e-126 455.3 318 72.0
Sopen10g033080 Solanum pennellii HOM05D005183 ORTHO05D006684 1.1e-125 453.8 313 71.9
Nitab4.5_0002715g0140 Nicotiana tabacum HOM05D005183 ORTHO05D006684 1.9e-125 453.0 313 72.8
PGR004G1465 Punica granatum HOM05D005183 ORTHO05D006684 1.9e-125 453.0 313 71.9
Sc20g0006050 Simmondsia chinensis HOM05D005183 ORTHO05D006684 1.9e-125 453.0 301 75.1
vmacro17863 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 2.5e-125 452.6 338 69.2
Nn2g14627 Nelumbo nucifera HOM05D005183 ORTHO05D006684 3.3e-125 452.2 311 71.7
Hund27408 Selenicereus undatus HOM05D005183 ORTHO05D006684 4.3e-125 451.8 309 73.5
QL07p040540 Quercus lobata HOM05D005183 ORTHO05D006684 7.4e-125 451.1 312 71.8
Eucgr.A01543 Eucalyptus grandis HOM05D005183 ORTHO05D006684 1.3e-124 450.3 308 73.1
Gorai.002G242600 Gossypium raimondii HOM05D005183 ORTHO05D006684 1.6e-124 449.9 313 71.6
Thecc.05G081000 Theobroma cacao HOM05D005183 ORTHO05D006684 2.8e-124 449.1 313 71.6
Gohir.D01G198400 Gossypium hirsutum HOM05D005183 ORTHO05D006684 6.2e-124 448.0 313 71.2
unitig_0.g1556 Utricularia gibba HOM05D005183 ORTHO05D006684 8.1e-124 447.6 311 71.4
Aqoxy2G03309 Aquilegia oxysepala HOM05D005183 ORTHO05D006684 1.1e-123 447.2 312 71.8
Lalb_Chr06g0173361 Lupinus albus HOM05D005183 ORTHO05D006684 1.4e-123 446.8 312 71.8
TAR371G0749 Trochodendron aralioides HOM05D005183 ORTHO05D006684 2.4e-123 446.0 314 71.0
Gohir.A01G209300 Gossypium hirsutum HOM05D005183 ORTHO05D006684 4.0e-123 445.3 313 70.6
Cpa.g.sc111.25 Carica papaya HOM05D005183 ORTHO05D006684 1.5e-122 443.4 312 71.2
Manes.08G020900 Manihot esculenta HOM05D005183 ORTHO05D006684 1.5e-122 443.4 313 70.0
Ah.09g233440 Amaranthus hybridus HOM05D005183 ORTHO05D006684 2.0e-122 443.0 312 69.6
Hund17099 Selenicereus undatus HOM05D005183 ORTHO05D006684 2.0e-122 443.0 312 72.4
ClCG10G019350 Citrullus lanatus HOM05D005183 ORTHO05D006684 3.4e-122 442.2 318 69.2
Ca_06436_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 5.8e-122 441.4 312 69.9
COL.COLO4_29815 Corchorus olitorius HOM05D005183 ORTHO05D006684 7.6e-122 441.0 313 70.0
THA.LOC104808666 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 9.9e-122 440.7 312 69.9
Ciclev10028864m.g Citrus clementina HOM05D005183 ORTHO05D006684 2.2e-121 439.5 311 69.8
CiPaw.09G008700 Carya illinoinensis HOM05D005183 ORTHO05D006684 2.9e-121 439.1 312 70.2
Duzib128G1222 Durio zibethinus HOM05D005183 ORTHO05D006684 3.8e-121 438.7 313 69.3
AUR62013753 Chenopodium quinoa HOM05D005183 ORTHO05D006684 1.1e-120 437.2 312 69.6
AUR62023398 Chenopodium quinoa HOM05D005183 ORTHO05D006684 1.4e-120 436.8 312 69.2
EL10Ac1g00750 Beta vulgaris HOM05D005183 ORTHO05D006684 1.9e-120 436.4 312 70.8
Glyma.10G066200 Glycine max HOM05D005183 ORTHO05D006684 2.5e-120 436.0 309 70.9
Sed0001030 Sechium edule HOM05D005183 ORTHO05D006684 2.5e-120 436.0 294 70.7
Lj5g0003294 Lotus japonicus HOM05D005183 ORTHO05D006684 5.5e-120 434.9 312 68.9
Potri.015G088700 Populus trichocarpa HOM05D005183 ORTHO05D006684 5.5e-120 434.9 311 69.1
CsaV3_3G036840 Cucumis sativus L. HOM05D005183 ORTHO05D006684 7.1e-120 434.5 299 69.9
Cfa016373 Carpinus fangiana HOM05D005183 ORTHO05D006684 9.3e-120 434.1 299 68.9
Psat6g078200 Pisum sativum HOM05D005183 ORTHO05D006684 9.3e-120 434.1 312 67.9
Glyma.13G151300 Glycine max HOM05D005183 ORTHO05D006684 1.6e-119 433.3 309 70.2
Haze_00122 Corylus avellana HOM05D005183 ORTHO05D006684 2.1e-119 433.0 326 65.0
MELO3C018272.2 Cucumis melo HOM05D005183 ORTHO05D006684 2.1e-119 433.0 316 67.4
VMungo0720G1906 Vigna mungo HOM05D005183 ORTHO05D006684 2.1e-119 433.0 311 69.5
Phvul.007G223300 Phaseolus vulgaris HOM05D005183 ORTHO05D006684 2.7e-119 432.6 311 69.5
Aa31LG8G10050 Aethionema arabicum HOM05D005183 ORTHO05D006684 1.8e-118 429.9 312 69.2
Prupe.7G117100 Prunus persica HOM05D005183 ORTHO05D006684 2.3e-118 429.5 304 68.8
Cfa008157 Carpinus fangiana HOM05D005183 ORTHO05D006684 3.9e-118 428.7 310 68.7
Nitab4.5_0005311g0010 Nicotiana tabacum HOM05D005183 ORTHO05D006684 3.3e-117 425.6 294 72.4
TPR.G28986 Trifolium pratense HOM05D005183 ORTHO05D006684 4.3e-117 425.2 308 66.9
PSO478G0399 Papaver somniferum HOM05D005183 ORTHO05D006684 9.6e-117 424.1 310 68.7
FvH4_6g17900 Fragaria vesca HOM05D005183 ORTHO05D006684 1.3e-116 423.7 325 64.9
FAN02G4090 Fragaria x ananassa HOM05D005183 ORTHO05D006684 1.3e-116 423.7 325 64.9
FAN14G3711 Fragaria x ananassa HOM05D005183 ORTHO05D006684 1.3e-116 423.7 325 64.9
CDE08G0191 Ceratophyllum demersum HOM05D005183 ORTHO05D006684 2.1e-116 422.9 307 68.4
PSO017G1745 Papaver somniferum HOM05D005183 ORTHO05D006684 3.7e-116 422.2 310 68.7
MD12G1018000 Malus domestica HOM05D005183 ORTHO05D006684 4.8e-116 421.8 304 67.4
TWI74G1514 Tripterygium wilfordii HOM05D005183 ORTHO05D006684 6.2e-116 421.4 290 68.6
Zm00001eb255650 Zea mays HOM05D005183 ORTHO05D006684 6.2e-116 421.4 312 66.7
Sp3g21310 Schrenkiella parvula HOM05D005183 ORTHO05D006684 8.2e-116 421.0 312 66.7
RcHm_v2.0_Chr3g0472151 Rosa chinensis HOM05D005183 ORTHO05D006684 1.1e-115 420.6 325 64.9
FAN05G1411 Fragaria x ananassa HOM05D005183 ORTHO05D006684 1.8e-115 419.9 325 64.0
Os01g0513800 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 2.4e-115 419.5 312 66.3
Zm00001eb292270 Zea mays HOM05D005183 ORTHO05D006684 5.3e-115 418.3 312 66.3
BcaC06g35547 Brassica carinata HOM05D005183 ORTHO05D006684 1.2e-114 417.2 312 66.0
BolC7t41857H Brassica oleracea HOM05D005183 ORTHO05D006684 1.2e-114 417.2 312 66.0
A07p08780 Brassica napus HOM05D005183 ORTHO05D006684 2.6e-114 416.0 312 66.3
FAN09G1214 Fragaria x ananassa HOM05D005183 ORTHO05D006684 4.5e-114 415.2 335 63.0
Medtr1g061160 Medicago truncatula HOM05D005183 ORTHO05D006684 4.5e-114 415.2 310 65.5
BraA07t28669Z Brassica rapa HOM05D005183 ORTHO05D006684 5.8e-114 414.8 312 66.0
Carub.0003s2385 Capsella rubella HOM05D005183 ORTHO05D006684 5.8e-114 414.8 297 67.0
AT3G23620 Arabidopsis thaliana HOM05D005183 ORTHO05D006684 7.6e-114 414.5 307 66.1
vmacro00782 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 1.0e-113 414.1 311 68.5
BcaB04g20435 Brassica carinata HOM05D005183 ORTHO05D006684 1.7e-113 413.3 312 66.0
C07p13620 Brassica napus HOM05D005183 ORTHO05D006684 1.7e-113 413.3 312 65.7
Thhalv10021169m.g Eutrema salsugineum HOM05D005183 ORTHO05D006684 8.4e-113 411.0 311 64.6
BolC1t03963H Brassica oleracea HOM05D005183 ORTHO05D006684 1.1e-112 410.6 294 68.4
C01p40070 Brassica napus HOM05D005183 ORTHO05D006684 2.5e-112 409.5 294 68.0
BcaB06g26517 Brassica carinata HOM05D005183 ORTHO05D006684 3.2e-112 409.1 312 64.7
A01p31440 Brassica napus HOM05D005183 ORTHO05D006684 3.2e-112 409.1 294 67.7
BraA01t03270Z Brassica rapa HOM05D005183 ORTHO05D006684 3.2e-112 409.1 294 67.7
CARHR099550 Cardamine hirsuta HOM05D005183 ORTHO05D006684 4.2e-112 408.7 310 65.5
Sabra15G0111600 Salix brachista HOM05D005183 ORTHO05D006684 4.2e-112 408.7 311 65.6
ATR0559G171 Amborella trichopoda HOM05D005183 ORTHO05D006684 9.3e-112 407.5 310 67.4
AL3G38300 Arabidopsis lyrata HOM05D005183 ORTHO05D006684 4.6e-111 405.2 311 64.3
HPP92_026689 Vanilla planifolia HOM05D005183 ORTHO05D006684 1.0e-110 404.1 311 63.7
TPR.G5686 Trifolium pratense HOM05D005183 ORTHO05D006684 3.9e-110 402.1 292 67.5
MD14G1016000 Malus domestica HOM05D005183 ORTHO05D006684 5.7e-109 398.3 326 61.7
THA.LOC104804771 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 5.7e-109 398.3 254 75.2
FAN05G2784 Fragaria x ananassa HOM05D005183 ORTHO05D006684 6.3e-108 394.8 250 74.8
HPP92_017999 Vanilla planifolia HOM05D005183 ORTHO05D006684 1.1e-107 394.0 288 65.3
SEGI_13997 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 2.0e-106 389.8 311 64.6
SEGI_31815 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 5.9e-106 388.3 309 64.4
Atru.chr8.1634 Acer truncatum HOM05D005183 ORTHO05D006684 5.5e-104 381.7 269 68.4
Gohir.A01G215950 Gossypium hirsutum HOM05D005183 ORTHO05D006684 6.7e-102 374.8 324 61.1
Actinidia31290 Actinidia chinensis HOM05D005183 ORTHO05D006684 1.6e-95 353.6 311 60.5
Rhsim11G0063800 Rhododendron simsii HOM05D005183 ORTHO05D006684 4.7e-95 352.1 311 60.5
Pp3c4_19370 Physcomitrium patens HOM05D005183 ORTHO05D006684 3.1e-91 339.3 305 54.4
Nitab4.5_0000132g0170 Nicotiana tabacum HOM05D005183 ORTHO05D006684 1.3e-84 317.4 240 68.3
SMO367G0957 Selaginella moellendorffii HOM05D005183 ORTHO05D006684 2.8e-84 316.2 313 51.8
Lalb_Chr02g0155161 Lupinus albus HOM05D005183 ORTHO05D006684 3.7e-84 315.8 223 71.7
Mapoly0098s0050 Marchantia polymorpha HOM05D005183 ORTHO05D006684 1.8e-83 313.5 295 55.3
Haze_19538 Corylus avellana HOM05D005183 ORTHO05D006684 2.2e-81 306.6 269 58.7
Pp3c26_6490 Physcomitrium patens HOM05D005183 ORTHO05D006684 5.5e-80 302.0 300 51.0
Ca_28565_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 6.1e-79 298.5 223 67.7
AagrBONN_evm.TU.Sc2ySwM_344.5577 Anthoceros agrestis HOM05D005183 ORTHO05D006684 7.5e-77 291.6 299 50.5
CBR_g32692 Chara braunii HOM05D012618 ORTHO05D006684 3.5e-74 282.7 293 52.6
Cre03.g197000 Chlamydomonas reinhardtii HOM05D005183 ORTHO05D006684 1.9e-72 276.9 296 48.6
MCO10G188 Micromonas commoda HOM05D005183 ORTHO05D006684 4.1e-67 259.2 295 45.8
Oeu037537.3 Olea europaea HOM05D005183 ORTHO05D006684 7.7e-66 255.0 231 61.9
HanXRQChr08g0223931 Helianthus annuus HOM05D005183 ORTHO05D006684 2.5e-48 196.8 186 61.8
PRCOL_00004600 Prasinoderma coloniale HOM05D005183 ORTHO05D006684 3.6e-47 193.0 300 37.7
Ca_11626_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 3.0e-33 146.7 99 72.7
Lalb_Chr02g0155171 Lupinus albus HOM05D005183 ORTHO05D006684 2.4e-30 137.1 90 71.1
Os05g0506900 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 6.8e-30 135.6 91 68.1
MSTRG.19230 Avicennia marina HOM05D005183 ORTHO05D026969 3.4e-29 133.3 88 73.9
MELO3C028534.2 Cucumis melo HOM05D005183 ORTHO05D006684 5.3e-22 109.4 76 65.8
C04p39730 Brassica napus HOM05D005183 ORTHO05D026969 1.9e-16 90.9 89 51.7
BolC4t25545H Brassica oleracea HOM05D005183 ORTHO05D026969 1.9e-16 90.9 89 51.7
TAR371G0095 Trochodendron aralioides HOM05D005183 ORTHO05D045124 6.2e-15 85.9 114 48.2
BolC6t35803H Brassica oleracea HOM05D005183 ORTHO05D026969 2.9e-12 77.0 89 47.2
Dinv21257 Davidia involucrata HOM05D005183 ORTHO05D045124 1.4e-11 74.7 96 52.1


User provided reference genes

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