Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A931T47 Lonicera japonica HOM05D004585 ORTHO05D005640 4.6e-109 397.9 199 100.0
Hma1.2p1_0567F.1_g180100 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 4.8e-98 361.3 199 89.4
Dinv20840 Davidia involucrata HOM05D004585 ORTHO05D005640 9.9e-96 353.6 198 87.9
Actinidia18578 Actinidia chinensis HOM05D004585 ORTHO05D005640 1.9e-94 349.4 199 84.4
Hma1.2p1_0026F.1_g016750 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 3.9e-92 341.7 199 86.4
Actinidia06707 Actinidia chinensis HOM05D004585 ORTHO05D005640 9.6e-91 337.0 199 81.4
vmacro21510 Vaccinium macrocarpon HOM05D004585 ORTHO05D005640 6.2e-90 334.3 199 81.9
Cc02_g10240 Coffea canephora HOM05D004585 ORTHO05D005640 9.0e-89 330.5 203 82.3
Rhsim03G0106100 Rhododendron simsii HOM05D004585 ORTHO05D005640 1.5e-88 329.7 200 80.5
CSS0035600 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D000484 3.4e-88 328.6 199 79.9
Peaxi162Scf00150g00411 Petunia axillaris HOM05D004585 ORTHO05D005640 1.6e-85 319.7 200 80.0
Solyc06g074720.4 Solanum lycopersicum HOM05D004585 ORTHO05D005640 2.1e-85 319.3 201 80.1
TAR633G1318 Trochodendron aralioides HOM05D004585 ORTHO05D005640 2.7e-85 318.9 200 78.0
GSVIVG01021851001 Vitis vinifera HOM05D004585 ORTHO05D005640 2.7e-85 318.9 199 79.9
TAR633G2635 Trochodendron aralioides HOM05D004585 ORTHO05D005640 4.6e-85 318.2 200 78.5
Nitab4.5_0000442g0080 Nicotiana tabacum HOM05D004585 ORTHO05D005640 6.0e-85 317.8 199 80.4
Sopen06g031130 Solanum pennellii HOM05D004585 ORTHO05D005640 6.0e-85 317.8 201 79.6
Dinv30656 Davidia involucrata HOM05D004585 ORTHO05D005640 7.9e-85 317.4 199 79.9
Lsat_1_v5_gn_2_86220 Lactuca sativa HOM05D004585 ORTHO05D005640 1.8e-84 316.2 198 76.8
Sopen11g026360 Solanum pennellii HOM05D004585 ORTHO05D005640 6.7e-84 314.3 201 79.1
PGSC0003DMG400000462 Solanum tuberosum HOM05D004585 ORTHO05D005640 1.1e-83 313.5 201 78.6
PGSC0003DMG400007128 Solanum tuberosum HOM05D004585 ORTHO05D005640 1.1e-83 313.5 201 79.1
HanXRQChr14g0456901 Helianthus annuus HOM05D004585 ORTHO05D005640 1.5e-83 313.2 191 77.5
ECA238G4124 Erigeron canadensis HOM05D004585 ORTHO05D005640 2.5e-83 312.4 199 76.4
SGA_v2.0_scaffold113G31721 Striga asiatica HOM05D004585 ORTHO05D005640 3.3e-83 312.0 200 78.5
Nitab4.5_0003470g0110 Nicotiana tabacum HOM05D004585 ORTHO05D005640 3.7e-82 308.5 201 78.1
HanXRQChr10g0319081 Helianthus annuus HOM05D004585 ORTHO05D005640 4.8e-82 308.1 193 76.7
Cfa011225 Carpinus fangiana HOM05D004585 ORTHO05D005640 8.1e-82 307.4 199 76.4
Nn3g20167 Nelumbo nucifera HOM05D004585 ORTHO05D005640 3.1e-81 305.4 201 76.1
MSTRG.412 Avicennia marina HOM05D004585 ORTHO05D005640 6.9e-81 304.3 194 76.8
Haze_02611 Corylus avellana HOM05D004585 ORTHO05D005640 9.0e-81 303.9 199 75.9
Oeu027977.1 Olea europaea HOM05D004585 ORTHO05D005640 9.0e-81 303.9 200 76.0
SGA_v2.0_scaffold10G05319 Striga asiatica HOM05D004585 ORTHO05D005640 3.4e-80 302.0 200 78.0
Thecc.10G109700 Theobroma cacao HOM05D004585 ORTHO05D005640 1.7e-79 299.7 199 74.9
Thecc.K0008500 Theobroma cacao HOM05D004585 ORTHO05D005640 1.7e-79 299.7 199 74.9
PGR142G4346 Punica granatum HOM05D004585 ORTHO05D005640 2.2e-79 299.3 200 76.0
Gorai.013G013300 Gossypium raimondii HOM05D004585 ORTHO05D005640 3.8e-79 298.5 199 74.9
Cfa013557 Carpinus fangiana HOM05D004585 ORTHO05D005640 4.9e-79 298.1 199 74.9
Prupe.1G580700 Prunus persica HOM05D004585 ORTHO05D005640 8.4e-79 297.4 203 75.9
THA.LOC104816458 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 1.4e-78 296.6 204 74.5
Gohir.D13G012100 Gossypium hirsutum HOM05D004585 ORTHO05D005640 3.2e-78 295.4 199 74.4
Cpa.g.sc128.48 Carica papaya HOM05D004585 ORTHO05D005640 4.2e-78 295.0 199 74.4
CiPaw.01G204400 Carya illinoinensis HOM05D004585 ORTHO05D005640 5.5e-78 294.7 199 74.9
Gohir.A13G011400 Gossypium hirsutum HOM05D004585 ORTHO05D005640 5.5e-78 294.7 199 73.9
Phvul.005G089300 Phaseolus vulgaris HOM05D004585 ORTHO05D005640 5.5e-78 294.7 199 73.4
PSO675G5749 Papaver somniferum HOM05D004585 ORTHO05D005640 9.3e-78 293.9 209 71.8
PSO717G0039 Papaver somniferum HOM05D004585 ORTHO05D005640 1.6e-77 293.1 211 71.1
Eucgr.G02711 Eucalyptus grandis HOM05D004585 ORTHO05D005640 3.5e-77 292.0 201 72.6
Manes.05G202500 Manihot esculenta HOM05D004585 ORTHO05D005640 3.5e-77 292.0 200 75.5
Psat6g221600 Pisum sativum HOM05D004585 ORTHO05D005640 3.5e-77 292.0 199 72.9
Sed0016970 Sechium edule HOM05D004585 ORTHO05D005640 4.6e-77 291.6 199 73.4
Sed0007729 Sechium edule HOM05D004585 ORTHO05D005640 7.9e-77 290.8 199 72.4
SGA_v2.0_scaffold154G37190 Striga asiatica HOM05D004585 ORTHO05D005640 7.9e-77 290.8 198 74.2
PSO173G0033 Papaver somniferum HOM05D004585 ORTHO05D005640 1.3e-76 290.0 211 70.1
ClCG08G008100 Citrullus lanatus HOM05D004585 ORTHO05D005640 1.8e-76 289.7 199 71.9
TPR.G4853 Trifolium pratense HOM05D004585 ORTHO05D005640 2.3e-76 289.3 199 72.9
MELO3C019883.2 Cucumis melo HOM05D004585 ORTHO05D005640 3.0e-76 288.9 199 72.4
CANSAT56G4487 Cannabis sativa HOM05D004585 ORTHO05D005640 5.1e-76 288.1 199 71.9
CsaV3_6G004080 Cucumis sativus L. HOM05D004585 ORTHO05D005640 8.7e-76 287.3 199 71.9
Ciclev10013752m.g Citrus clementina HOM05D004585 ORTHO05D005640 1.1e-75 287.0 201 74.1
CSS0012030 Camellia sinensis var. sinensis HOM05D004585 ORTHO05D005640 1.5e-75 286.6 220 67.7
Glyma.09G111400 Glycine max HOM05D004585 ORTHO05D005640 1.5e-75 286.6 203 71.9
Duzib128G1105 Durio zibethinus HOM05D004585 ORTHO05D005640 1.9e-75 286.2 204 72.1
Medtr1g108290 Medicago truncatula HOM05D004585 ORTHO05D005640 1.9e-75 286.2 199 71.4
THA.LOC104823192 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 2.5e-75 285.8 205 71.7
Ca_04982_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 3.3e-75 285.4 199 71.4
Ca_11096_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 3.3e-75 285.4 199 71.4
Thhalv10014607m.g Eutrema salsugineum HOM05D004585 ORTHO05D005640 3.3e-75 285.4 206 68.0
arahy.Tifrunner.gnm1.ann1.48LUDE Arachis hypogaea HOM05D004585 ORTHO05D005640 5.7e-75 284.6 201 72.1
Atru.chr12.969 Acer truncatum HOM05D004585 ORTHO05D005640 7.4e-75 284.3 199 73.4
arahy.Tifrunner.gnm1.ann1.CB8VHN Arachis hypogaea HOM05D004585 ORTHO05D005640 1.3e-74 283.5 201 72.1
Migut.F01706 Erythranthe guttata HOM05D004585 ORTHO05D005640 1.6e-74 283.1 204 70.1
QL04p041242 Quercus lobata HOM05D004585 ORTHO05D005640 2.8e-74 282.3 201 70.6
TWI38G0710 Tripterygium wilfordii HOM05D004585 ORTHO05D005640 3.7e-74 282.0 199 70.4
Glyma.02G173000 Glycine max HOM05D004585 ORTHO05D005640 1.1e-73 280.4 201 71.1
Sp6g38180 Schrenkiella parvula HOM05D004585 ORTHO05D005640 1.4e-73 280.0 206 66.0
Sc09g0005570 Simmondsia chinensis HOM05D004585 ORTHO05D005640 1.4e-73 280.0 192 70.3
Aa31LG3G3420 Aethionema arabicum HOM05D004585 ORTHO05D005640 1.8e-73 279.6 203 68.0
VMungo1080G1669 Vigna mungo HOM05D004585 ORTHO05D005640 2.4e-73 279.3 199 69.8
BcaC06g32168 Brassica carinata HOM05D004585 ORTHO05D005640 4.1e-73 278.5 207 65.7
C09p72190 Brassica napus HOM05D004585 ORTHO05D005640 6.9e-73 277.7 207 65.7
BolC9t59963H Brassica oleracea HOM05D004585 ORTHO05D005640 6.9e-73 277.7 207 65.7
CDE02G2408 Ceratophyllum demersum HOM05D000251 ORTHO05D002506 6.9e-73 277.7 200 71.5
SalBow6G2458 Salvia bowleyana HOM05D004585 ORTHO05D005640 6.9e-73 277.7 234 64.1
CARHR208690 Cardamine hirsuta HOM05D004585 ORTHO05D005640 9.0e-73 277.3 206 66.0
COL.COLO4_33895 Corchorus olitorius HOM05D004585 ORTHO05D005640 9.0e-73 277.3 171 77.8
Potri.010G234800 Populus trichocarpa HOM05D004585 ORTHO05D005640 1.2e-72 276.9 200 70.0
A10p31500 Brassica napus HOM05D004585 ORTHO05D005640 2.6e-72 275.8 207 65.2
BraA10t45196Z Brassica rapa HOM05D004585 ORTHO05D005640 2.6e-72 275.8 207 65.2
CDE04G0123 Ceratophyllum demersum HOM05D004585 ORTHO05D005640 2.6e-72 275.8 200 70.0
BraA02t04819Z Brassica rapa HOM05D004585 ORTHO05D005640 4.5e-72 275.0 203 66.5
Lalb_Chr14g0365991 Lupinus albus HOM05D004585 ORTHO05D005640 5.9e-72 274.6 198 71.2
Carub.0006s0352 Capsella rubella HOM05D004585 ORTHO05D005640 7.6e-72 274.2 204 66.7
C02p02000 Brassica napus HOM05D004585 ORTHO05D005640 1.0e-71 273.9 207 65.2
Hund06922 Selenicereus undatus HOM05D004585 ORTHO05D005640 1.0e-71 273.9 192 69.8
Lalb_Chr22g0354511 Lupinus albus HOM05D004585 ORTHO05D005640 2.2e-71 272.7 200 70.0
MD08G1243300 Malus domestica HOM05D004585 ORTHO05D005640 3.8e-71 271.9 206 66.5
Hund13887 Selenicereus undatus HOM05D004585 ORTHO05D005640 5.0e-71 271.6 194 67.0
BcaC03g12939 Brassica carinata HOM05D004585 ORTHO05D005640 8.5e-71 270.8 207 64.3
RcHm_v2.0_Chr4g0433501 Rosa chinensis HOM05D004585 ORTHO05D005640 8.5e-71 270.8 202 68.8
Sabra10G0182000 Salix brachista HOM05D004585 ORTHO05D005640 5.5e-70 268.1 200 68.0
Lj6g0005217 Lotus japonicus HOM05D004585 ORTHO05D005640 7.2e-70 267.7 198 67.2
Ah.03g136890 Amaranthus hybridus HOM05D004585 ORTHO05D005640 1.6e-69 266.5 177 70.6
PSO210G0756 Papaver somniferum HOM05D004585 ORTHO05D005640 1.6e-69 266.5 189 70.4
AL6G14230 Arabidopsis lyrata HOM05D004585 ORTHO05D005640 2.1e-69 266.2 205 65.9
Ah.16g102420 Amaranthus hybridus HOM05D004585 ORTHO05D005640 1.0e-68 263.8 178 70.8
EL10Ac2g03709 Beta vulgaris HOM05D004585 ORTHO05D005640 1.8e-68 263.1 171 72.5
EL10Ac4g08678 Beta vulgaris HOM05D004585 ORTHO05D005640 1.8e-68 263.1 171 72.5
Lj9A82T44 Lonicera japonica HOM05D004585 ORTHO05D005640 1.9e-67 259.6 150 89.3
FvH4_5g27351 Fragaria vesca HOM05D004585 ORTHO05D005640 3.3e-67 258.8 211 64.5
AT5G04600 Arabidopsis thaliana HOM05D004585 ORTHO05D005640 9.7e-67 257.3 205 63.9
EL10Ac4g08675 Beta vulgaris HOM05D004585 ORTHO05D005640 9.7e-67 257.3 171 71.3
Atru.chr10.1244 Acer truncatum HOM05D004585 ORTHO05D005640 2.2e-66 256.1 167 77.2
HPP92_008213 Vanilla planifolia HOM05D004585 ORTHO05D005640 2.2e-66 256.1 199 65.8
FAN26G1691 Fragaria x ananassa HOM05D004585 ORTHO05D005640 4.8e-66 255.0 211 63.5
AUR62003699 Chenopodium quinoa HOM05D004585 ORTHO05D005640 1.8e-65 253.1 172 69.8
Haze_22178 Corylus avellana HOM05D004585 ORTHO05D005640 3.4e-64 248.8 202 67.8
Os08g0412200 Oryza sativa ssp. japonica HOM05D004585 ORTHO05D005640 3.4e-64 248.8 200 62.5
Medtr4g127330 Medicago truncatula HOM05D004585 ORTHO05D005640 5.9e-64 248.1 182 69.2
Zm00001eb178930 Zea mays HOM05D004585 ORTHO05D005640 5.0e-63 245.0 193 65.8
ATR0068G115 Amborella trichopoda HOM05D004585 ORTHO05D005640 4.2e-62 241.9 200 59.5
FAN13G1680 Fragaria x ananassa HOM05D005925 ORTHO05D007270 4.2e-62 241.9 244 55.7
FAN18G1621 Fragaria x ananassa HOM05D005925 ORTHO05D007270 4.2e-62 241.9 244 55.7
BolC2t06157H Brassica oleracea HOM05D004585 ORTHO05D005640 7.9e-53 211.1 158 62.7
COL.COLO4_27310 Corchorus olitorius HOM05D004585 ORTHO05D005640 7.9e-53 211.1 129 79.1
DCAR_012470 Daucus carota HOM05D004585 ORTHO05D005640 2.3e-52 209.5 130 76.2
Ciclev10033004m.g Citrus clementina HOM05D004585 ORTHO05D005640 2.0e-51 206.5 130 77.7
Oeu046197.1 Olea europaea HOM05D004585 ORTHO05D005640 3.1e-49 199.1 139 69.1
TPR.G31410 Trifolium pratense HOM05D004585 ORTHO05D005640 2.0e-48 196.4 138 72.5
Pp3c8_3240 Physcomitrium patens HOM05D004585 ORTHO05D005640 6.5e-47 191.4 209 47.8
Pp3c3_32540 Physcomitrium patens HOM05D004585 ORTHO05D005640 4.7e-45 185.3 207 47.3
Mapoly0059s0023 Marchantia polymorpha HOM05D004585 ORTHO05D005640 5.7e-43 178.3 147 55.1
DCAR_001331 Daucus carota HOM05D004585 ORTHO05D005640 8.2e-42 174.5 130 66.9
AUR62018007 Chenopodium quinoa HOM05D004585 ORTHO05D005640 6.5e-39 164.9 110 71.8
Lj6g0027575 Lotus japonicus HOM05D004585 ORTHO05D005640 1.1e-38 164.1 124 66.9
SMO117G0347 Selaginella moellendorffii HOM05D004585 ORTHO05D005640 1.4e-36 157.1 186 42.5
MCO05G308 Micromonas commoda HOM05D004585 ORTHO05D005640 2.0e-35 153.3 143 47.6
AagrBONN_evm.TU.Sc2ySwM_228.827 Anthoceros agrestis HOM05D004585 ORTHO05D005640 1.7e-34 150.2 127 55.9
Cre08.g368500 Chlamydomonas reinhardtii HOM05D004585 ORTHO05D005640 6.3e-34 148.3 160 45.6
PRCOL_00003387 Prasinoderma coloniale HOM05D004585 ORTHO05D005640 6.3e-34 148.3 141 47.5
Aqoxy1G00240 Aquilegia oxysepala HOM05D004585 ORTHO05D005640 1.1e-33 147.5 93 72.0
unitig_26.g9455 Utricularia gibba HOM05D004585 ORTHO05D005640 1.6e-32 143.7 210 45.7
CBR_g11154 Chara braunii HOM05D004585 ORTHO05D005640 5.9e-32 141.7 210 39.0
Cfa021710 Carpinus fangiana HOM05D004585 ORTHO05D005640 6.1e-29 131.7 167 39.5
Oeu060262.1 Olea europaea HOM05D004585 ORTHO05D005640 2.7e-24 116.3 91 69.2
Haze_26093 Corylus avellana HOM05D004585 ORTHO05D005640 8.9e-20 101.3 143 37.8
BcaC06g32170 Brassica carinata HOM05D004585 ORTHO05D005640 2.4e-17 93.2 60 70.0
COL.COLO4_14104 Corchorus olitorius HOM05D004585 ORTHO05D005736 1.6e-16 90.5 75 58.7
EL10Ac7g17659 Beta vulgaris HOM05D004585 ORTHO05D005640 1.3e-15 87.4 69 56.5
COL.COLO4_17533 Corchorus olitorius HOM05D001240 ORTHO05D002450 3.0e-15 86.3 49 75.5
MD15G1437000 Malus domestica HOM05D004585 ORTHO05D005640 3.9e-15 85.9 49 79.6
TPR.G32073 Trifolium pratense HOM05D004585 ORTHO05D005640 3.9e-15 85.9 60 65.0
Oeu053518.1 Olea europaea HOM05D004585 ORTHO05D005640 5.0e-15 85.5 49 77.6
MD15G1436900 Malus domestica HOM05D004585 ORTHO05D005640 2.1e-13 80.1 60 61.7
MD15G1437100 Malus domestica HOM05D004585 ORTHO05D005640 8.0e-13 78.2 60 63.3
Glyma.09G232800 Glycine max HOM05D004585 ORTHO05D005640 2.6e-11 73.2 71 59.2
EL10Ac2g02998 Beta vulgaris HOM05D000461 ORTHO05D005640 1.1e-09 67.8 56 58.9
vmacro07224 Vaccinium macrocarpon HOM05D004585 ORTHO05D037280 2.0e-08 63.5 44 65.9
PSO478G2622 Papaver somniferum HOM05D004585 ORTHO05D037280 1.3e-07 60.8 33 78.8
DCAR_009360 Daucus carota HOM05D003145 ORTHO05D003586 2.3e-07 60.1 90 34.4
CAN.G530.9 Capsicum annuum HOM05D000115 ORTHO05D000645 3.0e-07 59.7 38 73.7
PSO447G0101 Papaver somniferum HOM05D004585 ORTHO05D037280 8.6e-07 58.2 33 75.8
BcaB01g05909 Brassica carinata HOM05D004585 ORTHO05D005640 1.5e-06 57.4 41 65.9
THA.LOC104815287 Tarenaya hassleriana HOM05D005326 ORTHO05D006734 2.5e-06 56.6 140 26.4
Psat1g082200 Pisum sativum HOM05D004585 ORTHO05D005640 3.3e-06 56.2 47 55.3
vmacro02513 Vaccinium macrocarpon HOM05D001495 ORTHO05D001391 4.3e-06 55.8 74 37.8
Cre06.g288750 Chlamydomonas reinhardtii HOM05D006251 ORTHO05D007695 5.6e-06 55.5 122 28.7
BcaB06g26544 Brassica carinata HOM05D000540 ORTHO05D008105 7.3e-06 55.1 75 34.7
Cre09.g386731 Chlamydomonas reinhardtii HOM05D003145 ORTHO05D003586 7.3e-06 55.1 68 38.2
Lj1P996T49 Lonicera japonica HOM05D003145 ORTHO05D003586 9.5e-06 54.7 72 36.1


User provided reference genes

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