Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A844T51 Lonicera japonica HOM05D005205 ORTHO05D006155 8.8e-175 617.1 366 100.0
CSS0028662 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 2.2e-117 426.4 255 84.7
CSS0009404 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 4.9e-117 425.2 255 84.3
Actinidia18451 Actinidia chinensis HOM05D005205 ORTHO05D006155 4.6e-115 418.7 256 82.4
Dinv17655 Davidia involucrata HOM05D005205 ORTHO05D006155 3.0e-114 416.0 255 82.4
SGA_v2.0_scaffold34G13663 Striga asiatica HOM05D005205 ORTHO05D006155 2.8e-112 409.5 253 82.6
MSTRG.2087 Avicennia marina HOM05D005205 ORTHO05D006155 3.1e-111 406.0 253 83.0
Cc11_g00390 Coffea canephora HOM05D005205 ORTHO05D006155 4.0e-111 405.6 256 80.5
Manes.04G160800 Manihot esculenta HOM05D005205 ORTHO05D006155 1.0e-109 401.0 254 78.7
TAR622G1118 Trochodendron aralioides HOM05D005205 ORTHO05D006155 4.9e-109 398.7 255 78.4
Ciclev10015886m.g Citrus clementina HOM05D005205 ORTHO05D006155 4.2e-108 395.6 254 78.3
Sc06g0007780 Simmondsia chinensis HOM05D005205 ORTHO05D006155 4.2e-108 395.6 256 76.6
CiPaw.16G000600 Carya illinoinensis HOM05D005205 ORTHO05D006155 1.6e-107 393.7 251 78.9
Eucgr.J00330 Eucalyptus grandis HOM05D005205 ORTHO05D006155 2.1e-107 393.3 256 78.1
PGR044G0613 Punica granatum HOM05D005205 ORTHO05D006155 3.5e-107 392.5 255 78.4
Prupe.1G351900 Prunus persica HOM05D005205 ORTHO05D006155 4.6e-107 392.1 248 77.4
Atru.chr11.38 Acer truncatum HOM05D005205 ORTHO05D006155 6.0e-107 391.7 248 77.8
Cfa018669 Carpinus fangiana HOM05D001610 ORTHO05D001585 7.9e-107 391.3 241 79.7
MD16G1004900 Malus domestica HOM05D005205 ORTHO05D006155 7.9e-107 391.3 252 76.2
DCAR_023495 Daucus carota HOM05D005205 ORTHO05D006155 1.8e-106 390.2 256 77.7
FvH4_4g37340 Fragaria vesca HOM05D005205 ORTHO05D006155 2.3e-106 389.8 246 78.9
RcHm_v2.0_Chr4g0447201 Rosa chinensis HOM05D005205 ORTHO05D006155 3.9e-106 389.0 249 77.9
Potri.010G254800 Populus trichocarpa HOM05D005205 ORTHO05D006155 1.1e-105 387.5 263 75.3
CANSAT78G1147 Cannabis sativa HOM05D005205 ORTHO05D006155 1.9e-105 386.7 248 75.8
FAN17G1859 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.9e-105 386.7 246 78.0
Oeu006323.1 Olea europaea HOM05D005205 ORTHO05D006155 1.9e-105 386.7 259 76.4
PSO063G1005 Papaver somniferum HOM05D005205 ORTHO05D006155 2.5e-105 386.3 258 74.8
PSO782G4176 Papaver somniferum HOM05D005205 ORTHO05D006155 2.5e-105 386.3 258 74.8
GSVIVG01034351001 Vitis vinifera HOM05D005205 ORTHO05D006155 5.7e-105 385.2 256 75.4
Migut.E00589 Erythranthe guttata HOM05D005205 ORTHO05D006155 7.4e-105 384.8 318 67.3
FAN07G0818 Fragaria x ananassa HOM05D005205 ORTHO05D006155 7.4e-105 384.8 246 77.6
Glyma.09G286000 Glycine max HOM05D005205 ORTHO05D006155 7.4e-105 384.8 252 75.4
Nitab4.5_0003034g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 7.4e-105 384.8 246 77.2
MELO3C011767.2 Cucumis melo HOM05D005205 ORTHO05D006155 9.6e-105 384.4 247 76.9
ClCG11G012770 Citrullus lanatus HOM05D005205 ORTHO05D006155 1.3e-104 384.0 253 76.3
MBI03_g11900_MAGBIO Magnolia biondii HOM05D005205 ORTHO05D006155 1.6e-104 383.6 254 74.8
TWI53G0012 Tripterygium wilfordii HOM05D005205 ORTHO05D006155 1.6e-104 383.6 248 75.0
Haze_17397 Corylus avellana HOM05D005205 ORTHO05D006155 2.1e-104 383.3 277 72.2
COL.COLO4_33151 Corchorus olitorius HOM05D005205 ORTHO05D006155 3.7e-104 382.5 254 76.4
MD13G1000800 Malus domestica HOM05D005205 ORTHO05D006155 3.7e-104 382.5 252 75.4
Nn3g18536 Nelumbo nucifera HOM05D005205 ORTHO05D006155 3.7e-104 382.5 255 74.1
Phvul.003G000300 Phaseolus vulgaris HOM05D005205 ORTHO05D006155 3.7e-104 382.5 249 75.1
Thecc.02G152000 Theobroma cacao HOM05D005205 ORTHO05D006155 3.7e-104 382.5 249 77.1
Aqoxy3G04336 Aquilegia oxysepala HOM05D005205 ORTHO05D006155 6.3e-104 381.7 255 75.7
Sopen02g008300 Solanum pennellii HOM05D005205 ORTHO05D006155 8.2e-104 381.3 246 76.4
THA.LOC104800388 Tarenaya hassleriana HOM05D005205 ORTHO05D006155 8.2e-104 381.3 248 76.2
Sed0014845 Sechium edule HOM05D005205 ORTHO05D006155 1.8e-103 380.2 253 75.1
Glyma.20G000300 Glycine max HOM05D005205 ORTHO05D006155 2.4e-103 379.8 252 74.2
Gorai.005G213800 Gossypium raimondii HOM05D005205 ORTHO05D006155 2.4e-103 379.8 253 75.1
Nitab4.5_0000067g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 2.4e-103 379.8 246 76.8
Lalb_Chr04g0259081 Lupinus albus HOM05D005205 ORTHO05D006155 3.1e-103 379.4 253 75.1
Solyc02g049070.4 Solanum lycopersicum HOM05D005205 ORTHO05D006155 3.1e-103 379.4 246 76.0
arahy.Tifrunner.gnm1.ann1.LXEK1C Arachis hypogaea HOM05D005205 ORTHO05D006155 4.1e-103 379.0 250 75.6
Gohir.D02G191000 Gossypium hirsutum HOM05D005205 ORTHO05D006155 5.3e-103 378.6 253 75.1
VMungo0251G0539 Vigna mungo HOM05D001906 ORTHO05D002083 6.9e-103 378.3 249 74.7
arahy.Tifrunner.gnm1.ann1.JXP1KB Arachis hypogaea HOM05D005205 ORTHO05D006155 9.0e-103 377.9 250 75.2
Duzib248G0811 Durio zibethinus HOM05D005205 ORTHO05D006155 9.0e-103 377.9 249 75.9
CsaV3_5G029150 Cucumis sativus L. HOM05D005205 ORTHO05D006155 1.2e-102 377.5 246 76.4
Gohir.A03G167900 Gossypium hirsutum HOM05D005205 ORTHO05D006155 2.6e-102 376.3 253 74.7
Lj2g0013395 Lotus japonicus HOM05D005205 ORTHO05D006155 7.6e-102 374.8 252 74.2
QL01p000318 Quercus lobata HOM05D005205 ORTHO05D006155 7.6e-102 374.8 255 75.3
ECA246G5176 Erigeron canadensis HOM05D005205 ORTHO05D006155 1.0e-101 374.4 253 75.1
Sabra10G0198100 Salix brachista HOM05D005205 ORTHO05D006155 1.0e-101 374.4 253 75.5
Ca_12345_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 2.2e-101 373.2 248 74.2
Duzib052G0598 Durio zibethinus HOM05D005205 ORTHO05D006155 2.9e-101 372.9 255 74.1
Sed0020094 Sechium edule HOM05D005205 ORTHO05D006155 6.5e-101 371.7 258 72.5
AUR62017757 Chenopodium quinoa HOM05D005205 ORTHO05D006155 3.2e-100 369.4 252 71.4
HanXRQChr04g0099271 Helianthus annuus HOM05D005205 ORTHO05D006155 3.2e-100 369.4 252 74.6
AUR62032894 Chenopodium quinoa HOM05D005205 ORTHO05D006155 7.2e-100 368.2 252 71.4
HanXRQChr06g0171581 Helianthus annuus HOM05D005205 ORTHO05D006155 2.1e-99 366.7 281 67.6
SalBow2G1531 Salvia bowleyana HOM05D005205 ORTHO05D006155 2.1e-99 366.7 264 71.6
unitig_27.g25294 Utricularia gibba HOM05D005205 ORTHO05D006155 7.9e-99 364.8 253 74.7
Ah.01g011460 Amaranthus hybridus HOM05D005205 ORTHO05D006155 2.3e-98 363.2 244 70.9
Lalb_Chr10g0094691 Lupinus albus HOM05D005205 ORTHO05D006155 3.0e-98 362.8 248 72.6
Thhalv10013959m.g Eutrema salsugineum HOM05D005205 ORTHO05D006155 6.7e-98 361.7 249 71.9
AT5G08540 Arabidopsis thaliana HOM05D005205 ORTHO05D006155 1.5e-97 360.5 246 72.0
Aa31LG3G17990 Aethionema arabicum HOM05D005205 ORTHO05D006155 1.9e-97 360.1 247 74.1
EL10Ac9g23020 Beta vulgaris HOM05D005205 ORTHO05D006155 2.5e-97 359.8 250 70.8
Oeu027937.2 Olea europaea HOM05D005205 ORTHO05D006155 5.7e-97 358.6 324 61.1
AL6G19250 Arabidopsis lyrata HOM05D005205 ORTHO05D006155 7.4e-97 358.2 247 72.5
Sp6g34350 Schrenkiella parvula HOM05D005205 ORTHO05D006155 7.4e-97 358.2 258 69.0
ATR0124G008 Amborella trichopoda HOM05D005205 ORTHO05D006155 9.7e-97 357.8 252 69.8
Carub.0006s0750 Capsella rubella HOM05D005205 ORTHO05D006155 1.3e-96 357.5 241 73.4
CARHR204440 Cardamine hirsuta HOM05D005205 ORTHO05D006155 2.8e-96 356.3 250 72.0
C09p68390 Brassica napus HOM05D005205 ORTHO05D006155 1.1e-95 354.4 258 68.2
BolC9t59586H Brassica oleracea HOM05D005205 ORTHO05D006155 1.1e-95 354.4 258 68.2
BcaB08g37247 Brassica carinata HOM05D005205 ORTHO05D006155 1.4e-95 354.0 248 69.8
A10p28180 Brassica napus HOM05D005205 ORTHO05D006155 1.8e-95 353.6 255 69.0
BraA10t44867Z Brassica rapa HOM05D005205 ORTHO05D006155 1.8e-95 353.6 255 69.0
Cpa.g.sc221.15 Carica papaya HOM05D005205 ORTHO05D006155 1.2e-94 350.9 248 73.0
HPP92_007317 Vanilla planifolia HOM05D005205 ORTHO05D006155 1.2e-91 340.9 250 68.0
Os04g0527800 Oryza sativa ssp. japonica HOM05D005205 ORTHO05D006155 1.0e-90 337.8 257 63.4
C03p04410 Brassica napus HOM05D005205 ORTHO05D006155 2.8e-88 329.7 248 65.7
BolC3t12972H Brassica oleracea HOM05D005205 ORTHO05D006155 1.4e-87 327.4 248 64.9
BcaB01g05587 Brassica carinata HOM05D005205 ORTHO05D006155 2.6e-86 323.2 252 63.5
A03p03920 Brassica napus HOM05D005205 ORTHO05D006155 2.6e-86 323.2 240 65.0
BraA03t09738Z Brassica rapa HOM05D005205 ORTHO05D006155 4.5e-86 322.4 240 65.0
Lsat_1_v5_gn_3_35240 Lactuca sativa HOM05D005205 ORTHO05D006155 1.0e-82 311.2 194 79.4
Medtr1g039490 Medicago truncatula HOM05D005205 ORTHO05D006155 1.1e-79 301.2 207 71.0
Peaxi162Scf00655g00330 Petunia axillaris HOM05D005205 ORTHO05D006155 1.0e-74 284.6 248 62.1
Zm00001eb076700 Zea mays HOM05D005205 ORTHO05D006155 9.7e-73 278.1 253 58.1
RcHm_v2.0_Chr6g0263291 Rosa chinensis HOM05D005205 ORTHO05D006155 8.2e-72 275.0 255 57.3
Mapoly0169s0014 Marchantia polymorpha HOM05D005205 ORTHO05D006155 4.0e-66 256.1 248 50.4
Pp3c3_33330 Physcomitrium patens HOM05D005205 ORTHO05D006155 1.2e-65 254.6 261 49.8
SMO367G0125 Selaginella moellendorffii HOM05D005205 ORTHO05D006155 2.0e-65 253.8 248 49.2
RcHm_v2.0_Chr1g0316621 Rosa chinensis HOM05D005205 ORTHO05D006155 1.6e-62 244.2 161 74.5
CBR_g39443 Chara braunii HOM05D005205 ORTHO05D006155 2.4e-55 220.3 238 48.3
FAN28G1115 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.0e-54 217.2 162 69.1
CDE05G2447 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 1.3e-53 214.5 134 76.9
AagrBONN_evm.TU.Sc2ySwM_228.2354 Anthoceros agrestis HOM05D005205 ORTHO05D006155 1.2e-51 208.0 194 51.0
FAN03G0776 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.2e-49 201.4 183 59.6
Rhsim04G0130700 Rhododendron simsii HOM05D005205 ORTHO05D006155 1.2e-49 201.4 159 65.4
vmacro08834 Vaccinium macrocarpon HOM05D005205 ORTHO05D006155 1.7e-48 197.6 141 68.8
Hma1.2p1_3386F.1_g335770 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 1.3e-45 188.0 184 58.7
Nn1g04118 Nelumbo nucifera HOM05D005205 ORTHO05D006155 3.6e-43 179.9 127 71.7
TPR.G30235 Trifolium pratense HOM05D005205 ORTHO05D006155 8.3e-40 168.7 162 56.8
RcHm_v2.0_Chr4g0403031 Rosa chinensis HOM05D005205 ORTHO05D006155 5.6e-36 156.0 162 56.2
Ca_12346_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 7.3e-36 155.6 105 68.6
BcaB01g05586 Brassica carinata HOM05D005205 ORTHO05D006155 2.1e-35 154.1 106 69.8
Psat0s5832g0080 Pisum sativum HOM05D005205 ORTHO05D006155 4.7e-35 152.9 105 67.6
FAN14G4394 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.0e-33 147.5 102 70.6
Hma1.2p1_3386F.1_g335780 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 5.4e-31 139.4 103 72.8
HanXRQChr01g0001451 Helianthus annuus HOM05D005205 ORTHO05D006155 2.1e-30 137.5 94 74.5
SEGI_15080 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 3.9e-29 133.3 102 60.8
Nn7g36511 Nelumbo nucifera HOM05D005205 ORTHO05D006155 4.7e-27 126.3 73 84.9
CDE05G2109 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 5.2e-26 122.9 70 75.7
RcHm_v2.0_Chr3g0483731 Rosa chinensis HOM05D005205 ORTHO05D006155 1.4e-23 114.8 80 71.2
PRCOL_00005587 Prasinoderma coloniale HOM05D005205 ORTHO05D006155 1.9e-23 114.4 200 33.0
Cc00_g03890 Coffea canephora HOM05D005205 ORTHO05D006155 1.7e-21 107.8 90 66.7
RcHm_v2.0_Chr3g0483721 Rosa chinensis HOM05D005205 ORTHO05D006155 6.6e-21 105.9 67 68.7
SHI21163 Sapria himalayana HOM05D005205 ORTHO05D006155 2.8e-19 100.5 79 54.4
SEGI_28687 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 3.1e-18 97.1 86 59.3
FAN01G2591 Fragaria x ananassa HOM05D005205 ORTHO05D006155 6.9e-18 95.9 91 58.2
TPR.G15012 Trifolium pratense HOM05D005205 ORTHO05D006155 3.8e-16 90.1 56 76.8
TPR.G39699 Trifolium pratense HOM05D005205 ORTHO05D006155 3.8e-16 90.1 50 84.0
Nn5g29101 Nelumbo nucifera HOM05D005205 ORTHO05D006155 8.4e-16 89.0 55 80.0
SHI21160 Sapria himalayana HOM05D005205 ORTHO05D006155 6.0e-14 82.8 96 51.0
Mapoly0067s0101 Marchantia polymorpha HOM05D005205 ORTHO05D006155 1.7e-13 81.3 183 29.5
Mapoly0067s0100 Marchantia polymorpha HOM05D005205 ORTHO05D006155 1.1e-12 78.6 160 33.1
MBI16_g05633_MAGBIO Magnolia biondii HOM05D000869 ORTHO05D000685 8.1e-11 72.4 133 33.1
Mapoly0067s0102 Marchantia polymorpha HOM05D005205 ORTHO05D006155 8.1e-11 72.4 147 32.0
SHI21161 Sapria himalayana HOM05D005205 ORTHO05D006155 9.9e-09 65.5 38 76.3
Sabra08G0000800 Salix brachista HOM05D005205 ORTHO05D006155 3.8e-08 63.5 71 52.1
Psat5g249280 Pisum sativum HOM05D005205 ORTHO05D006155 9.3e-07 58.9 32 81.2


User provided reference genes

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