Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A834T69 Lonicera japonica HOM05D006827 ORTHO05D008725 3.3e-139 498.4 266 100.0
Dinv15137 Davidia involucrata HOM05D006827 ORTHO05D008725 4.1e-81 305.4 261 63.2
COL.COLO4_34569 Corchorus olitorius HOM05D001281 ORTHO05D001139 5.2e-76 288.5 186 73.7
Gorai.011G202600 Gossypium raimondii HOM05D006827 ORTHO05D008725 1.2e-75 287.3 185 73.5
Hma1.2p1_0516F.1_g170510 Hydrangea macrophylla HOM05D006827 ORTHO05D008725 3.4e-75 285.8 233 64.8
Gohir.A10G174600 Gossypium hirsutum HOM05D006827 ORTHO05D008725 7.6e-75 284.6 186 73.1
Thecc.04G305900 Theobroma cacao HOM05D006827 ORTHO05D008725 7.6e-75 284.6 186 73.1
Actinidia31567 Actinidia chinensis HOM05D006827 ORTHO05D008725 1.3e-74 283.9 232 63.8
CAN.G281.10 Capsicum annuum HOM05D006827 ORTHO05D008725 1.3e-74 283.9 222 63.5
DCAR_023373 Daucus carota HOM05D006827 ORTHO05D008725 1.3e-74 283.9 186 75.8
Gohir.D10G181100 Gossypium hirsutum HOM05D006827 ORTHO05D008725 1.1e-73 280.8 223 63.2
Cc03_g00540 Coffea canephora HOM05D006827 ORTHO05D008725 2.4e-73 279.6 226 61.9
Nitab4.5_0002421g0010 Nicotiana tabacum HOM05D006827 ORTHO05D008725 2.4e-73 279.6 172 76.7
Sopen01g023660 Solanum pennellii HOM05D006827 ORTHO05D008725 4.1e-73 278.9 184 72.8
Solyc01g058190.4 Solanum lycopersicum HOM05D006827 ORTHO05D008725 5.4e-73 278.5 184 72.8
Ah.13g071520 Amaranthus hybridus HOM05D006827 ORTHO05D008725 7.1e-73 278.1 181 75.1
EL10Ac3g05552 Beta vulgaris HOM05D006827 ORTHO05D008725 7.1e-73 278.1 182 71.4
CiPaw.01G134600 Carya illinoinensis HOM05D006827 ORTHO05D008725 9.2e-73 277.7 233 63.9
Manes.03G207700 Manihot esculenta HOM05D006827 ORTHO05D008725 1.2e-72 277.3 186 74.7
Nitab4.5_0004047g0010 Nicotiana tabacum HOM05D006827 ORTHO05D008725 1.6e-72 276.9 172 76.7
PGSC0003DMG400015968 Solanum tuberosum HOM05D006827 ORTHO05D008725 1.6e-72 276.9 184 72.3
TAR365G1248 Trochodendron aralioides HOM05D006827 ORTHO05D008725 2.1e-72 276.6 186 71.0
AUR62016245 Chenopodium quinoa HOM05D002153 ORTHO05D002137 3.5e-72 275.8 181 73.5
Oeu014225.1 Olea europaea HOM05D006827 ORTHO05D008725 4.6e-72 275.4 266 56.0
THA.LOC104820318 Tarenaya hassleriana HOM05D006827 ORTHO05D008725 4.6e-72 275.4 185 71.9
Migut.N00027 Erythranthe guttata HOM05D006827 ORTHO05D008725 6.0e-72 275.0 237 58.2
Nn3g21791 Nelumbo nucifera HOM05D006827 ORTHO05D008725 1.3e-71 273.9 185 69.7
MSTRG.3845 Avicennia marina HOM05D006827 ORTHO05D008725 8.6e-71 271.2 190 68.9
Duzib212G0426 Durio zibethinus HOM05D006827 ORTHO05D008725 1.5e-70 270.4 185 70.3
Sc25g0003190 Simmondsia chinensis HOM05D006827 ORTHO05D008725 7.3e-70 268.1 173 74.0
Aa31LG8G4170 Aethionema arabicum HOM05D006827 ORTHO05D008725 1.2e-69 267.3 186 67.2
arahy.Tifrunner.gnm1.ann1.7T6EZL Arachis hypogaea HOM05D006827 ORTHO05D008725 1.2e-69 267.3 231 60.6
arahy.Tifrunner.gnm1.ann1.W8AIPN Arachis hypogaea HOM05D006827 ORTHO05D008725 1.2e-69 267.3 231 60.6
Potri.008G101900 Populus trichocarpa HOM05D006827 ORTHO05D008725 1.2e-69 267.3 189 67.7
MBI18_g27379_MAGBIO Magnolia biondii HOM05D006827 ORTHO05D008725 2.1e-69 266.5 264 54.9
GSVIVG01034952001 Vitis vinifera HOM05D006827 ORTHO05D008725 2.1e-69 266.5 186 69.4
Lsat_1_v5_gn_6_116121 Lactuca sativa HOM05D006827 ORTHO05D008725 2.8e-69 266.2 234 60.7
MD13G1149000 Malus domestica HOM05D006827 ORTHO05D008725 2.8e-69 266.2 186 68.8
SGA_v2.0_scaffold227G43227 Striga asiatica HOM05D006827 ORTHO05D008725 3.6e-69 265.8 182 70.3
TWI53G1816 Tripterygium wilfordii HOM05D006827 ORTHO05D008725 3.6e-69 265.8 185 68.1
CARHR092440 Cardamine hirsuta HOM05D006827 ORTHO05D008725 4.7e-69 265.4 186 66.1
PSO761G0463 Papaver somniferum HOM05D006827 ORTHO05D008725 4.7e-69 265.4 186 68.3
unitig_88.g27700 Utricularia gibba HOM05D006827 ORTHO05D008725 6.2e-69 265.0 186 68.3
Glyma.15G137900 Glycine max HOM05D006827 ORTHO05D008725 1.1e-68 264.2 232 60.3
BraA01t03774Z Brassica rapa HOM05D006827 ORTHO05D008725 1.4e-68 263.8 186 66.7
TWI09G0591 Tripterygium wilfordii HOM05D006827 ORTHO05D008725 1.4e-68 263.8 184 69.0
Hund11994 Selenicereus undatus HOM05D006827 ORTHO05D008725 1.8e-68 263.5 231 60.6
ATR1120G107 Amborella trichopoda HOM05D006827 ORTHO05D008725 2.4e-68 263.1 185 68.1
AL3G30170 Arabidopsis lyrata HOM05D006827 ORTHO05D008725 2.4e-68 263.1 171 70.2
ClCG06G004410 Citrullus lanatus HOM05D006827 ORTHO05D008725 2.4e-68 263.1 185 71.4
PSO210G0119 Papaver somniferum HOM05D006827 ORTHO05D008725 2.4e-68 263.1 186 67.7
Lj6g0001147 Lotus japonicus HOM05D001281 ORTHO05D001139 3.1e-68 262.7 224 62.1
Ca_00959_v3 Cicer arietinum L. HOM05D006827 ORTHO05D008725 5.2e-68 261.9 175 72.0
Glyma.09G032900 Glycine max HOM05D001281 ORTHO05D008725 5.2e-68 261.9 225 59.6
Sp3g15370 Schrenkiella parvula HOM05D006827 ORTHO05D008725 5.2e-68 261.9 173 70.5
PGR031G1277 Punica granatum HOM05D006827 ORTHO05D008725 6.9e-68 261.5 173 73.4
BcaB04g20857 Brassica carinata HOM05D006827 ORTHO05D008725 1.2e-67 260.8 174 69.0
Carub.0003s1692 Capsella rubella HOM05D006827 ORTHO05D008725 1.2e-67 260.8 174 69.0
ECA246G4663 Erigeron canadensis HOM05D002153 ORTHO05D002137 1.2e-67 260.8 171 73.1
QL06p013028 Quercus lobata HOM05D006827 ORTHO05D008725 1.5e-67 260.4 186 71.5
CANSAT78G0077 Cannabis sativa HOM05D006827 ORTHO05D008725 2.0e-67 260.0 187 66.8
Thhalv10021204m.g Eutrema salsugineum HOM05D006827 ORTHO05D008725 2.0e-67 260.0 171 69.0
TPR.G33906 Trifolium pratense HOM05D006827 ORTHO05D008725 2.0e-67 260.0 235 57.0
Cfa015277 Carpinus fangiana HOM05D006827 ORTHO05D008725 3.4e-67 259.2 232 59.5
A01p37130 Brassica napus HOM05D006827 ORTHO05D008725 5.8e-67 258.5 171 69.6
Aqoxy2G02656 Aquilegia oxysepala HOM05D006827 ORTHO05D008725 7.6e-67 258.1 215 61.9
BcaC09g48673 Brassica carinata HOM05D006827 ORTHO05D008725 7.6e-67 258.1 171 69.6
BcaC09g48674 Brassica carinata HOM05D006827 ORTHO05D008725 7.6e-67 258.1 171 69.6
C01p47070 Brassica napus HOM05D006827 ORTHO05D008725 7.6e-67 258.1 171 69.6
Prupe.1G113000 Prunus persica HOM05D006827 ORTHO05D008725 7.6e-67 258.1 169 73.4
AT3G17170 Arabidopsis thaliana HOM05D006827 ORTHO05D008725 1.3e-66 257.3 170 68.2
FvH4_4g20660 Fragaria vesca HOM05D006827 ORTHO05D008725 1.7e-66 256.9 185 66.5
FAN12G3056 Fragaria x ananassa HOM05D006827 ORTHO05D008725 1.7e-66 256.9 185 66.5
BolC1t04673H Brassica oleracea HOM05D006827 ORTHO05D008725 3.8e-66 255.8 171 69.0
Phvul.006G120200 Phaseolus vulgaris HOM05D006827 ORTHO05D008725 3.8e-66 255.8 227 58.6
HanXRQChr05g0148611 Helianthus annuus HOM05D006827 ORTHO05D008725 6.4e-66 255.0 171 72.5
Rhsim04G0242100 Rhododendron simsii HOM05D006827 ORTHO05D008725 6.4e-66 255.0 178 70.2
Sed0009970 Sechium edule HOM05D006827 ORTHO05D008725 8.4e-66 254.6 174 69.5
Eucgr.B03980 Eucalyptus grandis HOM05D006827 ORTHO05D008725 1.1e-65 254.2 185 67.0
Ciclev10005460m.g Citrus clementina HOM05D006827 ORTHO05D008725 2.4e-65 253.1 167 73.7
VMungo0540G1290 Vigna mungo HOM05D006827 ORTHO05D008725 9.3e-65 251.1 227 58.1
FAN07G0118 Fragaria x ananassa HOM05D006827 ORTHO05D008725 1.2e-64 250.8 191 63.9
Medtr2g033490 Medicago truncatula HOM05D006827 ORTHO05D008725 1.2e-64 250.8 172 69.2
arahy.Tifrunner.gnm1.ann1.GV6LK0 Arachis hypogaea HOM05D006827 ORTHO05D008725 1.6e-64 250.4 231 58.4
MELO3C021255.2 Cucumis melo HOM05D006827 ORTHO05D008725 2.1e-64 250.0 281 50.9
RcHm_v2.0_Chr4g0426061 Rosa chinensis HOM05D006827 ORTHO05D008725 1.3e-63 247.3 170 69.4
CAN.G582.1 Capsicum annuum HOM05D006827 ORTHO05D008725 4.3e-62 242.3 185 64.3
Psat1g161800 Pisum sativum HOM05D006827 ORTHO05D008725 4.3e-62 242.3 168 69.0
Os12g0563200 Oryza sativa ssp. japonica HOM05D006827 ORTHO05D008725 7.3e-62 241.5 173 64.7
Zm00001eb136900 Zea mays HOM05D006827 ORTHO05D008725 1.3e-61 240.7 180 61.7
Lalb_Chr18g0058551 Lupinus albus HOM05D006827 ORTHO05D008725 2.1e-61 240.0 216 60.2
QL03p023650 Quercus lobata HOM05D006827 ORTHO05D008725 3.6e-61 239.2 230 57.8
Peaxi162Scf00228g00735 Petunia axillaris HOM05D006827 ORTHO05D008725 6.2e-61 238.4 150 74.7
Sabra08G0077100 Salix brachista HOM05D006827 ORTHO05D007631 6.2e-61 238.4 181 64.1
Haze_01351 Corylus avellana HOM05D002153 ORTHO05D002137 8.1e-61 238.0 301 47.8
HPP92_027958 Vanilla planifolia HOM05D006827 ORTHO05D008725 8.1e-61 238.0 186 61.8
vmacro07963 Vaccinium macrocarpon HOM05D006827 ORTHO05D008725 1.7e-58 230.3 214 58.4
CsaV3_UNG230110 Cucumis sativus L. HOM05D006827 ORTHO05D008725 1.3e-53 214.2 164 66.5
CsaV3_6G028440 Cucumis sativus L. HOM05D006827 ORTHO05D008725 3.0e-47 193.0 208 52.4
Hma1.2p1_0013F.1_g008250 Hydrangea macrophylla HOM05D006827 ORTHO05D008725 9.0e-44 181.4 109 75.2
Atru.chr4.3069 Acer truncatum HOM05D006827 ORTHO05D008725 3.4e-43 179.5 129 69.8
MD16G1149200 Malus domestica HOM05D006827 ORTHO05D008725 1.6e-40 170.6 135 65.2
arahy.Tifrunner.gnm1.ann1.25F6GK Arachis hypogaea HOM05D006827 ORTHO05D008725 8.5e-34 148.3 151 54.3
Mapoly0005s0049 Marchantia polymorpha HOM05D006827 ORTHO05D008725 7.2e-33 145.2 158 44.9
SEGI_22692 Sequoiadendron giganteum HOM05D006827 ORTHO05D008725 2.1e-32 143.7 106 61.3
Pp3c14_11410 Physcomitrium patens HOM05D006827 ORTHO05D008725 7.4e-30 135.2 145 43.4
Pp3c14_11414 Physcomitrium patens HOM05D006827 ORTHO05D008725 7.4e-30 135.2 145 43.4
AUR62032776 Chenopodium quinoa HOM05D006827 ORTHO05D008725 1.3e-29 134.4 97 70.1
Cpa.g.sc9.7 Carica papaya HOM05D001281 ORTHO05D008725 3.1e-28 129.8 96 68.8
CBR_g38487 Chara braunii HOM05D006827 ORTHO05D008725 5.5e-25 119.0 145 39.3
SMO351G0308 Selaginella moellendorffii HOM05D006827 ORTHO05D008725 1.2e-24 117.9 98 52.0
Hma1.2p1_0013F.1_g008240 Hydrangea macrophylla HOM05D006827 ORTHO05D008725 3.8e-18 96.3 75 65.3
BcaC05g28821 Brassica carinata HOM05D006827 ORTHO05D023991 8.5e-18 95.1 97 51.5
Psat7g189800 Pisum sativum HOM05D006827 ORTHO05D008725 4.2e-17 92.8 66 62.1
A05p32600 Brassica napus HOM05D006827 ORTHO05D008725 1.1e-14 84.7 79 53.2
BraA05t22084Z Brassica rapa HOM05D006827 ORTHO05D008725 1.1e-14 84.7 79 53.2
PRCOL_00004690 Prasinoderma coloniale HOM05D006827 ORTHO05D008725 4.8e-13 79.3 101 40.6
Zm00001eb028550 Zea mays HOM05D006608 ORTHO05D008316 1.1e-12 78.2 145 34.5
C05p49280 Brassica napus HOM05D006827 ORTHO05D008725 3.1e-12 76.6 87 47.1
Psat4g040600 Pisum sativum HOM05D006827 ORTHO05D008725 5.0e-10 69.3 126 34.1
BcaB06g25810 Brassica carinata HOM05D006827 ORTHO05D023991 4.4e-06 56.2 30 73.3
Ca_29226_v3 Cicer arietinum L. HOM05D006252 ORTHO05D008725 9.7e-06 55.1 66 39.4


User provided reference genes

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