Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A833G37 Lonicera japonica HOM05D004725 ORTHO05D005683 7.0e-114 414.1 225 100.0
DCAR_030461 Daucus carota HOM05D004725 ORTHO05D005683 3.7e-91 338.6 223 78.9
Dinv15152 Davidia involucrata HOM05D004725 ORTHO05D005683 1.1e-90 337.0 208 82.7
Cc00_g03440 Coffea canephora HOM05D004725 ORTHO05D005683 9.5e-87 323.9 226 73.9
PGSC0003DMG400007347 Solanum tuberosum HOM05D004725 ORTHO05D005683 2.1e-86 322.8 225 74.7
Oeu038772.1 Olea europaea HOM05D004725 ORTHO05D005683 6.2e-86 321.2 225 74.7
Solyc11g065900.2 Solanum lycopersicum HOM05D004725 ORTHO05D005683 6.2e-86 321.2 225 74.7
Sopen11g025640 Solanum pennellii HOM05D004725 ORTHO05D005683 6.2e-86 321.2 225 74.7
SalBow8G1743 Salvia bowleyana HOM05D004725 ORTHO05D005683 1.1e-85 320.5 225 73.3
CSS0037380 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 4.0e-85 318.5 225 74.2
Oeu001165.1 Olea europaea HOM05D004725 ORTHO05D005683 1.2e-84 317.0 249 69.1
Lsat_1_v5_gn_8_139661 Lactuca sativa HOM05D004725 ORTHO05D005683 3.4e-84 315.5 225 71.6
MSTRG.3853 Avicennia marina HOM05D004725 ORTHO05D005683 4.4e-84 315.1 225 72.9
Nitab4.5_0000160g0190 Nicotiana tabacum HOM05D004725 ORTHO05D005683 2.9e-83 312.4 232 72.0
SGA_v2.0_scaffold157G37322 Striga asiatica HOM05D004725 ORTHO05D005683 8.3e-83 310.8 225 71.6
Migut.G00073 Erythranthe guttata HOM05D004725 ORTHO05D005683 3.2e-82 308.9 225 71.6
Peaxi162Scf00057g02232 Petunia axillaris HOM05D004725 ORTHO05D005683 5.4e-82 308.1 234 69.7
GSVIVG01034975001 Vitis vinifera HOM05D004725 ORTHO05D005683 2.1e-81 306.2 225 73.3
HanXRQChr10g0291591 Helianthus annuus HOM05D004725 ORTHO05D005683 1.0e-80 303.9 212 75.9
HanXRQChr17g0554971 Helianthus annuus HOM05D004725 ORTHO05D005683 2.3e-80 302.8 212 75.5
ECA236G4776 Erigeron canadensis HOM05D004725 ORTHO05D005683 1.9e-79 299.7 225 69.3
Actinidia31555 Actinidia chinensis HOM05D004725 ORTHO05D005683 5.6e-79 298.1 227 68.7
Nn3g21748 Nelumbo nucifera HOM05D004725 ORTHO05D005683 5.6e-79 298.1 225 69.8
unitig_37.g12782 Utricularia gibba HOM05D004725 ORTHO05D005683 2.6e-76 289.3 225 67.6
TAR376G0735 Trochodendron aralioides HOM05D004725 ORTHO05D005683 2.9e-75 285.8 225 67.6
Nitab4.5_0002789g0040 Nicotiana tabacum HOM05D004725 ORTHO05D005683 4.1e-74 282.0 225 68.9
MBI18_g03518_MAGBIO Magnolia biondii HOM05D004725 ORTHO05D005683 2.5e-71 272.7 221 67.4
TPR.G27119 Trifolium pratense HOM05D004725 ORTHO05D005683 9.6e-71 270.8 228 61.8
Aqoxy6G02121 Aquilegia oxysepala HOM05D004725 ORTHO05D005683 1.6e-70 270.0 231 65.4
CSS0018454 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 2.8e-70 269.2 224 65.6
SalBow6G0528 Salvia bowleyana HOM05D004725 ORTHO05D005683 2.8e-70 269.2 225 65.3
CDE02G0725 Ceratophyllum demersum HOM05D004725 ORTHO05D005683 8.1e-70 267.7 213 67.1
Lj3g0003769 Lotus japonicus HOM05D004725 ORTHO05D005683 2.4e-69 266.2 228 60.5
Os05g0143400 Oryza sativa ssp. japonica HOM05D004725 ORTHO05D005683 3.4e-68 262.3 203 69.0
Sc25g0003230 Simmondsia chinensis HOM05D004725 ORTHO05D005683 9.9e-68 260.8 224 62.9
CANSAT35G1772 Cannabis sativa HOM05D004725 ORTHO05D005683 2.9e-67 259.2 235 56.2
PSO782G1146 Papaver somniferum HOM05D004725 ORTHO05D005683 2.9e-67 259.2 227 63.9
CiPaw.02G073900 Carya illinoinensis HOM05D004725 ORTHO05D005683 3.8e-67 258.8 210 62.4
Phvul.010G140100 Phaseolus vulgaris HOM05D004725 ORTHO05D005683 3.8e-67 258.8 224 59.8
VMungo0331G0107 Vigna mungo HOM05D004725 ORTHO05D005683 7.1e-66 254.6 226 60.6
Glyma.08G194400 Glycine max HOM05D004725 ORTHO05D005683 2.1e-65 253.1 226 60.2
Psat1g138600 Pisum sativum HOM05D004725 ORTHO05D005683 2.1e-65 253.1 216 59.3
Zm00001eb108600 Zea mays HOM05D004725 ORTHO05D005683 2.7e-65 252.7 204 65.7
PSO384G4206 Papaver somniferum HOM05D004725 ORTHO05D005683 1.3e-64 250.4 226 61.9
PSO063G5877 Papaver somniferum HOM05D004725 ORTHO05D005683 5.1e-64 248.4 226 61.5
vmacro08028 Vaccinium macrocarpon HOM05D004725 ORTHO05D005683 2.5e-63 246.1 240 60.4
ClCG05G001400 Citrullus lanatus HOM05D004725 ORTHO05D005683 2.8e-62 242.7 224 56.7
CsaV3_3G008790 Cucumis sativus L. HOM05D004725 ORTHO05D005683 3.6e-62 242.3 224 55.4
QL06p012630 Quercus lobata HOM05D004725 ORTHO05D005683 6.2e-62 241.5 189 66.1
Dinv44275 Davidia involucrata HOM05D004725 ORTHO05D005683 8.1e-62 241.1 161 80.1
Eucgr.D00314 Eucalyptus grandis HOM05D004725 ORTHO05D005683 5.3e-61 238.4 230 56.5
RcHm_v2.0_Chr4g0425721 Rosa chinensis HOM05D004725 ORTHO05D005683 6.9e-61 238.0 235 54.0
Sed0009995 Sechium edule HOM05D004725 ORTHO05D005683 6.9e-61 238.0 225 55.1
FvH4_4g13700 Fragaria vesca HOM05D004725 ORTHO05D005683 1.5e-60 236.9 233 54.5
Manes.03G206000 Manihot esculenta HOM05D004725 ORTHO05D005683 3.4e-60 235.7 221 56.6
Medtr2g044210 Medicago truncatula HOM05D004725 ORTHO05D005683 3.4e-60 235.7 198 61.1
arahy.Tifrunner.gnm1.ann1.ASV3U0 Arachis hypogaea HOM05D004725 ORTHO05D005683 5.8e-60 235.0 271 49.4
Ciclev10005849m.g Citrus clementina HOM05D004725 ORTHO05D005683 7.6e-60 234.6 225 55.6
Potri.008G103800 Populus trichocarpa HOM05D004725 ORTHO05D005683 9.9e-60 234.2 214 57.0
SEGI_00745 Sequoiadendron giganteum HOM05D004725 ORTHO05D005683 1.3e-59 233.8 219 55.7
Sabra08G0078400 Salix brachista HOM05D004725 ORTHO05D005683 2.2e-59 233.0 214 56.1
Carub.0008s0897 Capsella rubella HOM05D004725 ORTHO05D005683 2.9e-59 232.6 224 53.1
AL8G22680 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 3.8e-59 232.3 212 54.2
THA.LOC104827096 Tarenaya hassleriana HOM05D004725 ORTHO05D005683 6.4e-59 231.5 210 55.2
FAN07G1636 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.1e-58 230.7 235 53.6
Carub.0008s0882 Capsella rubella HOM05D004725 ORTHO05D005683 1.4e-58 230.3 225 52.0
CAN.G598.3 Capsicum annuum HOM05D004725 ORTHO05D005683 3.2e-58 229.2 165 73.3
Glyma.07G011200 Glycine max HOM05D004725 ORTHO05D005683 4.2e-58 228.8 206 59.7
AT5G49010 Arabidopsis thaliana HOM05D004725 ORTHO05D005683 5.4e-58 228.4 212 53.3
Thhalv10004892m.g Eutrema salsugineum HOM05D004725 ORTHO05D005683 3.5e-57 225.7 212 52.4
Thecc.04G302700 Theobroma cacao HOM05D004725 ORTHO05D005683 1.3e-56 223.8 232 55.2
Rhsim05G0134600 Rhododendron simsii HOM05D004725 ORTHO05D005683 2.3e-56 223.0 314 46.2
CARHR056790 Cardamine hirsuta HOM05D004725 ORTHO05D005683 5.1e-56 221.9 203 54.2
Sp2g19380 Schrenkiella parvula HOM05D004725 ORTHO05D005683 5.1e-56 221.9 212 51.9
GSVIVG01034912001 Vitis vinifera HOM05D004725 ORTHO05D005683 5.1e-56 221.9 205 62.0
Aa31LG11G8130 Aethionema arabicum HOM05D004725 ORTHO05D005683 6.6e-56 221.5 219 51.1
Gohir.A10G173400 Gossypium hirsutum HOM05D004725 ORTHO05D005683 1.1e-55 220.7 232 53.4
Gohir.D10G179900 Gossypium hirsutum HOM05D004725 ORTHO05D005683 1.9e-55 219.9 232 53.9
AL8G22360 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 2.5e-55 219.5 229 49.8
Gorai.011G201500 Gossypium raimondii HOM05D004725 ORTHO05D005683 2.5e-55 219.5 233 53.2
BolC7t44486H Brassica oleracea HOM05D004725 ORTHO05D005683 3.3e-55 219.2 212 52.4
C07p39630 Brassica napus HOM05D004725 ORTHO05D005683 7.4e-55 218.0 212 52.4
Prupe.1G115500 Prunus persica HOM05D004725 ORTHO05D005683 9.6e-55 217.6 188 59.0
Ca_09654_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 1.3e-54 217.2 207 57.5
Duzib212G0103 Durio zibethinus HOM05D004725 ORTHO05D005683 1.6e-54 216.9 232 53.4
COL.COLO4_09634 Corchorus olitorius HOM05D004725 ORTHO05D005683 3.6e-54 215.7 231 53.2
MELO3C006096.2 Cucumis melo HOM05D004725 ORTHO05D005683 4.8e-54 215.3 239 49.4
A06p38630 Brassica napus HOM05D004725 ORTHO05D005683 1.1e-53 214.2 212 51.9
BraA06t26778Z Brassica rapa HOM05D004725 ORTHO05D005683 1.1e-53 214.2 212 51.9
Rhsim04G0240300 Rhododendron simsii HOM05D004725 ORTHO05D005683 1.4e-53 213.8 267 49.8
Ah.13g071340 Amaranthus hybridus HOM05D004725 ORTHO05D005683 1.8e-53 213.4 215 55.8
FAN12G0808 Fragaria x ananassa HOM05D004725 ORTHO05D005683 3.1e-53 212.6 233 51.1
ATR0691G022 Amborella trichopoda HOM05D004725 ORTHO05D005683 2.0e-52 209.9 170 65.3
Haze_01314 Corylus avellana HOM05D004725 ORTHO05D005683 2.0e-52 209.9 158 69.0
COL.COLO4_34597 Corchorus olitorius HOM05D004725 ORTHO05D005683 5.8e-52 208.4 198 57.6
SHI00123 Sapria himalayana HOM05D004725 ORTHO05D005683 5.8e-52 208.4 225 50.2
TWI09G0594 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 5.8e-52 208.4 225 52.9
arahy.Tifrunner.gnm1.ann1.NMZ4WG Arachis hypogaea HOM05D004725 ORTHO05D005683 9.3e-50 201.1 356 37.9
PGR031G0191 Punica granatum HOM05D004725 ORTHO05D005683 1.2e-49 200.7 224 49.1
Mapoly0029s0136 Marchantia polymorpha HOM05D004725 ORTHO05D005683 5.1e-48 195.3 226 46.9
HPP92_027744 Vanilla planifolia HOM05D004725 ORTHO05D005683 6.7e-48 194.9 176 58.0
SMO351G0117 Selaginella moellendorffii HOM05D004725 ORTHO05D005683 1.9e-47 193.4 217 48.4
BcaC06g30733 Brassica carinata HOM05D004725 ORTHO05D005683 3.3e-47 192.6 167 58.7
AUR62039263 Chenopodium quinoa HOM05D004725 ORTHO05D005683 4.3e-47 192.2 226 50.4
Hma1.2p1_0013F.1_g008380 Hydrangea macrophylla HOM05D004725 ORTHO05D005683 1.6e-46 190.3 131 71.0
Pp3c12_20580 Physcomitrium patens HOM05D004725 ORTHO05D005683 3.7e-46 189.1 201 49.8
FAN12G0673 Fragaria x ananassa HOM05D004725 ORTHO05D005683 8.1e-46 188.0 260 43.8
Atru.chr4.3042 Acer truncatum HOM05D004725 ORTHO05D005683 1.4e-45 187.2 146 69.9
MD13G1151200 Malus domestica HOM05D004725 ORTHO05D005683 5.3e-45 185.3 223 49.8
AagrBONN_evm.TU.Sc2ySwM_228.2917 Anthoceros agrestis HOM05D004725 ORTHO05D005683 2.6e-44 183.0 225 45.3
CARHR182700 Cardamine hirsuta HOM05D004725 ORTHO05D005683 1.2e-41 174.1 187 47.1
BcaC06g30731 Brassica carinata HOM05D004725 ORTHO05D005683 4.6e-41 172.2 138 63.8
EL10Ac3g05524 Beta vulgaris HOM05D004725 ORTHO05D005683 1.8e-40 170.2 251 44.2
Lalb_Chr20g0110441 Lupinus albus HOM05D004725 ORTHO05D005683 8.7e-40 167.9 115 73.0
Ca_02282_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 1.5e-39 167.2 129 69.0
Cpa.g.sc9.42 Carica papaya HOM05D004725 ORTHO05D005683 6.9e-37 158.3 164 57.9
MD16G1152100 Malus domestica HOM05D004725 ORTHO05D005683 3.2e-34 149.4 188 50.5
CBR_g34308 Chara braunii HOM05D004725 ORTHO05D005683 2.7e-33 146.4 211 37.4
HPP92_026068 Vanilla planifolia HOM05D004725 ORTHO05D005683 1.8e-29 133.7 120 59.2
FAN07G0549 Fragaria x ananassa HOM05D004725 ORTHO05D005683 4.1e-29 132.5 144 50.0
Potri.010G147050 Populus trichocarpa HOM05D004725 ORTHO05D005683 2.2e-27 126.7 225 36.4
FvH4_4g20000 Fragaria vesca HOM05D004725 ORTHO05D005683 3.8e-27 125.9 162 44.4
CAN.G327.11 Capsicum annuum HOM05D004725 ORTHO05D005683 1.4e-26 124.0 165 46.1
CSS0006068 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 5.5e-26 122.1 87 72.4
HPP92_026067 Vanilla planifolia HOM05D004725 ORTHO05D005683 2.5e-23 113.2 92 64.1
MCO14G052 Micromonas commoda HOM05D004725 ORTHO05D005683 5.7e-23 112.1 213 34.7
FAN22G2356 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.7e-22 110.5 92 64.1
AUR62016226 Chenopodium quinoa HOM05D004725 ORTHO05D005683 2.4e-21 106.7 218 37.6
Lalb_Chr20g0115601 Lupinus albus HOM05D004725 ORTHO05D005683 2.4e-21 106.7 100 56.0
Atru.chr3.3242 Acer truncatum HOM05D004725 ORTHO05D005683 3.0e-16 89.7 211 31.8
Nitab4.5_0007792g0050 Nicotiana tabacum HOM05D004725 ORTHO05D005683 2.8e-14 83.2 78 56.4
Actinidia18458 Actinidia chinensis HOM05D004725 ORTHO05D005683 4.8e-14 82.4 54 74.1
RcHm_v2.0_Chr7g0210081 Rosa chinensis HOM05D004725 ORTHO05D005683 1.8e-13 80.5 99 45.5
Cre09.g393600 Chlamydomonas reinhardtii HOM05D004725 ORTHO05D005683 3.1e-13 79.7 208 27.4
Zm00001eb143530 Zea mays HOM05D004725 ORTHO05D005683 2.0e-12 77.0 85 54.1
GSVIVG01034926001 Vitis vinifera HOM05D004725 ORTHO05D005683 2.6e-12 76.6 76 63.2
RcHm_v2.0_Chr6g0255221 Rosa chinensis HOM05D004725 ORTHO05D005683 1.0e-11 74.7 84 53.6
Zm00001eb401350 Zea mays HOM05D004725 ORTHO05D005683 1.3e-11 74.3 132 41.7
TWI73G0983 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 1.7e-11 73.9 66 63.6
Zm00001eb417800 Zea mays HOM05D004725 ORTHO05D005683 9.4e-10 68.2 201 30.8
CARHR287810 Cardamine hirsuta HOM05D004725 ORTHO05D005683 1.2e-09 67.8 175 33.7
Zm00001eb228430 Zea mays HOM05D004725 ORTHO05D005683 1.4e-08 64.3 80 47.5
Lalb_Chr20g0110431 Lupinus albus HOM05D004725 ORTHO05D005683 5.2e-08 62.4 64 48.4
PRCOL_00004769 Prasinoderma coloniale HOM05D004725 ORTHO05D005683 8.8e-08 61.6 211 27.0
CARHR286240 Cardamine hirsuta HOM05D004725 ORTHO05D005683 3.3e-07 59.7 63 38.1


User provided reference genes

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