Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A720G71 Lonicera japonica HOM05D005575 ORTHO05D007355 1.5e-178 629.4 322 100.0
Dinv14070 Davidia involucrata HOM05D005575 ORTHO05D007355 2.1e-156 555.8 316 87.7
Dinv44604 Davidia involucrata HOM05D005575 ORTHO05D007355 4.7e-156 554.7 316 88.3
Actinidia08453 Actinidia chinensis HOM05D005575 ORTHO05D007355 6.8e-155 550.8 316 87.7
GSVIVG01018083001 Vitis vinifera HOM05D005575 ORTHO05D007355 9.9e-154 547.0 316 87.7
Haze_11258 Corylus avellana HOM05D005575 ORTHO05D007355 1.2e-151 540.0 316 85.1
Cfa008407 Carpinus fangiana HOM05D005575 ORTHO05D007355 2.7e-151 538.9 316 84.8
CSS0047423 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 1.9e-149 532.7 317 85.8
QL06p000355 Quercus lobata HOM05D005575 ORTHO05D007355 4.3e-149 531.6 316 83.9
ECA240G2677 Erigeron canadensis HOM05D005575 ORTHO05D007355 7.3e-149 530.8 318 84.6
DCAR_030703 Daucus carota HOM05D005575 ORTHO05D007355 2.1e-148 529.3 314 82.2
Lsat_1_v5_gn_3_124080 Lactuca sativa HOM05D005575 ORTHO05D007355 2.1e-148 529.3 316 85.1
Nn3g19479 Nelumbo nucifera HOM05D005575 ORTHO05D007355 1.1e-147 526.9 316 84.5
Thecc.04G242000 Theobroma cacao HOM05D005575 ORTHO05D007355 1.8e-147 526.2 316 82.9
CSS0022244 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 4.0e-147 525.0 318 84.3
Cpa.g.sc58.3 Carica papaya HOM05D005575 ORTHO05D007355 4.0e-147 525.0 316 82.9
CiPaw.01G193100 Carya illinoinensis HOM05D005575 ORTHO05D007355 5.3e-147 524.6 316 82.9
CSS0045755 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 1.2e-146 523.5 318 84.0
Cc03_g04530 Coffea canephora HOM05D005575 ORTHO05D007355 2.0e-146 522.7 318 83.3
Peaxi162Scf00467g00914 Petunia axillaris HOM05D005575 ORTHO05D007355 2.6e-146 522.3 316 83.2
Manes.15G034800 Manihot esculenta HOM05D005575 ORTHO05D007355 4.4e-146 521.5 316 82.9
Nitab4.5_0012347g0010 Nicotiana tabacum HOM05D005575 ORTHO05D007355 1.3e-145 520.0 318 79.6
COL.COLO4_13167 Corchorus olitorius HOM05D005575 ORTHO05D007355 1.7e-145 519.6 316 81.3
COL.COLO4_26929 Corchorus olitorius HOM05D005575 ORTHO05D007355 1.7e-145 519.6 316 81.0
Nitab4.5_0000941g0050 Nicotiana tabacum HOM05D005575 ORTHO05D007355 1.7e-145 519.6 318 80.5
SalBow3G3314 Salvia bowleyana HOM05D005575 ORTHO05D007355 1.7e-145 519.6 318 79.9
Nitab4.5_0000977g0090 Nicotiana tabacum HOM05D005575 ORTHO05D007355 2.2e-145 519.2 316 83.2
VMungo0720G2094 Vigna mungo HOM05D005575 ORTHO05D007355 2.2e-145 519.2 316 82.3
Ciclev10004932m.g Citrus clementina HOM05D005575 ORTHO05D007355 2.9e-145 518.8 317 82.6
CANSAT78G2185 Cannabis sativa HOM05D005575 ORTHO05D007355 4.9e-145 518.1 316 83.2
TWI53G0136 Tripterygium wilfordii HOM05D005575 ORTHO05D007355 4.9e-145 518.1 320 82.5
Duzib052G1036 Durio zibethinus HOM05D005575 ORTHO05D007355 6.4e-145 517.7 320 81.2
Manes.03G170700 Manihot esculenta HOM05D005575 ORTHO05D007355 6.4e-145 517.7 318 82.7
Atru.chr4.2312 Acer truncatum HOM05D005575 ORTHO05D007355 1.9e-144 516.2 317 82.0
MSTRG.24710 Avicennia marina HOM05D005575 ORTHO05D007355 1.9e-144 516.2 318 81.8
vmacro15397 Vaccinium macrocarpon HOM05D005575 ORTHO05D007355 1.9e-144 516.2 313 82.7
Nitab4.5_0003815g0070 Nicotiana tabacum HOM05D005575 ORTHO05D007355 2.4e-144 515.8 316 83.2
Peaxi162Scf00788g00114 Petunia axillaris HOM05D005575 ORTHO05D007355 2.4e-144 515.8 318 79.6
MD16G1218200 Malus domestica HOM05D005575 ORTHO05D007355 5.4e-144 514.6 323 82.4
Psat6g136600 Pisum sativum HOM05D005575 ORTHO05D007355 5.4e-144 514.6 318 82.1
Solyc03g005310.4 Solanum lycopersicum HOM05D005575 ORTHO05D007355 5.4e-144 514.6 316 82.3
Phvul.007G279400 Phaseolus vulgaris HOM05D005575 ORTHO05D007355 7.1e-144 514.2 316 81.6
Sopen03g001350 Solanum pennellii HOM05D005575 ORTHO05D007355 7.1e-144 514.2 316 82.3
Medtr1g041115 Medicago truncatula HOM05D005575 ORTHO05D007355 1.6e-143 513.1 318 81.1
Rhsim02G0032000 Rhododendron simsii HOM05D005575 ORTHO05D007355 1.6e-143 513.1 318 82.1
arahy.Tifrunner.gnm1.ann1.XPT1GW Arachis hypogaea HOM05D005575 ORTHO05D007355 2.1e-143 512.7 316 82.3
Lj6g0016373 Lotus japonicus HOM05D005575 ORTHO05D007355 2.1e-143 512.7 317 81.7
PGR004G2878 Punica granatum HOM05D005575 ORTHO05D007355 7.9e-143 510.8 316 80.1
SGA_v2.0_scaffold79G25614 Striga asiatica HOM05D005575 ORTHO05D007355 1.0e-142 510.4 318 78.6
EL10Ac8g19543 Beta vulgaris HOM05D005575 ORTHO05D007355 1.3e-142 510.0 316 81.3
arahy.Tifrunner.gnm1.ann1.0U5UXQ Arachis hypogaea HOM05D005575 ORTHO05D007355 1.7e-142 509.6 316 82.0
Gohir.A10G117000 Gossypium hirsutum HOM05D005575 ORTHO05D007355 1.7e-142 509.6 316 81.3
PGSC0003DMG400013391 Solanum tuberosum HOM05D005575 ORTHO05D007355 2.3e-142 509.2 316 81.3
Eucgr.H03187 Eucalyptus grandis HOM05D005575 ORTHO05D007355 3.0e-142 508.8 318 80.8
Potri.008G159900 Populus trichocarpa HOM05D005575 ORTHO05D007355 3.9e-142 508.4 318 82.7
Gohir.D10G150300 Gossypium hirsutum HOM05D005575 ORTHO05D007355 6.6e-142 507.7 314 81.5
MD13G1203000 Malus domestica HOM05D005575 ORTHO05D007355 6.6e-142 507.7 323 81.1
Glyma.10G001900 Glycine max HOM05D005575 ORTHO05D007355 8.7e-142 507.3 316 80.4
HanXRQChr13g0423561 Helianthus annuus HOM05D005575 ORTHO05D007355 8.7e-142 507.3 316 81.3
Gorai.011G167300 Gossypium raimondii HOM05D005575 ORTHO05D007355 1.1e-141 506.9 314 81.8
Lalb_Chr01g0020841 Lupinus albus HOM05D005575 ORTHO05D007355 1.5e-141 506.5 317 80.4
Ca_01767_v3 Cicer arietinum L. HOM05D005575 ORTHO05D007355 2.5e-141 505.8 316 80.7
ClCG05G004730 Citrullus lanatus HOM05D005575 ORTHO05D007355 2.5e-141 505.8 320 80.6
Oeu064221.1 Olea europaea HOM05D005575 ORTHO05D007355 3.3e-141 505.4 335 76.7
Hund21566 Selenicereus undatus HOM05D005575 ORTHO05D007355 3.3e-141 505.4 309 80.9
vmacro08393 Vaccinium macrocarpon HOM05D005575 ORTHO05D007355 3.3e-141 505.4 313 80.8
Rhsim04G0195700 Rhododendron simsii HOM05D005575 ORTHO05D007355 5.6e-141 504.6 313 81.2
TPR.G32768 Trifolium pratense HOM05D005575 ORTHO05D007355 5.6e-141 504.6 318 79.9
Prupe.1G025500 Prunus persica HOM05D005575 ORTHO05D007355 9.6e-141 503.8 323 81.1
Glyma.02G001600 Glycine max HOM05D005575 ORTHO05D007355 1.3e-140 503.4 316 80.4
TWI09G0420 Tripterygium wilfordii HOM05D005575 ORTHO05D007355 3.6e-140 501.9 318 80.5
MELO3C006485.2 Cucumis melo HOM05D005575 ORTHO05D007355 1.8e-139 499.6 320 79.7
Duzib151G0571 Durio zibethinus HOM05D005575 ORTHO05D007355 4.0e-139 498.4 316 79.7
CsaV3_3G012740 Cucumis sativus L. HOM05D005575 ORTHO05D007355 5.3e-139 498.0 320 79.1
Sed0020385 Sechium edule HOM05D005575 ORTHO05D007355 5.3e-139 498.0 318 79.6
Sabra08G0121800 Salix brachista HOM05D005575 ORTHO05D007355 2.6e-138 495.7 345 75.9
PSO461G0077 Papaver somniferum HOM05D005575 ORTHO05D007355 3.4e-138 495.4 316 80.1
CAN.G749.16 Capsicum annuum HOM05D005575 ORTHO05D007355 9.9e-138 493.8 318 77.7
Migut.N00227 Erythranthe guttata HOM05D005575 ORTHO05D007355 6.4e-137 491.1 322 75.8
PSO210G5698 Papaver somniferum HOM05D005575 ORTHO05D007355 1.9e-136 489.6 316 79.1
PGSC0003DMG401006082 Solanum tuberosum HOM05D005575 ORTHO05D007355 4.2e-136 488.4 318 77.0
Sc25g0004210 Simmondsia chinensis HOM05D005575 ORTHO05D007355 5.4e-136 488.0 316 78.5
AUR62034661 Chenopodium quinoa HOM05D005575 ORTHO05D007355 9.3e-136 487.3 318 78.0
Solyc09g083000.3 Solanum lycopersicum HOM05D005575 ORTHO05D007355 4.6e-135 485.0 318 77.0
Sopen09g031870 Solanum pennellii HOM05D005575 ORTHO05D007355 6.0e-135 484.6 318 77.0
Aa31LG8G9490 Aethionema arabicum HOM05D005575 ORTHO05D007355 5.6e-133 478.0 322 75.8
RcHm_v2.0_Chr4g0388931 Rosa chinensis HOM05D005575 ORTHO05D007355 7.4e-133 477.6 323 74.9
FAN12G1274 Fragaria x ananassa HOM05D005575 ORTHO05D007355 1.6e-132 476.5 323 74.3
FvH4_4g01960 Fragaria vesca HOM05D005575 ORTHO05D007355 4.8e-132 474.9 323 74.0
BcaB06g26421 Brassica carinata HOM05D005575 ORTHO05D007355 6.2e-132 474.6 316 75.3
Thhalv10020692m.g Eutrema salsugineum HOM05D005575 ORTHO05D007355 6.2e-132 474.6 322 74.2
AT3G22990 Arabidopsis thaliana HOM05D005575 ORTHO05D007355 8.1e-132 474.2 322 73.0
AL3G37400 Arabidopsis lyrata HOM05D005575 ORTHO05D007355 1.1e-131 473.8 322 73.3
CARHR098930 Cardamine hirsuta HOM05D005575 ORTHO05D007355 1.4e-131 473.4 322 73.0
Sp3g20680 Schrenkiella parvula HOM05D005575 ORTHO05D007355 9.0e-131 470.7 322 73.3
Carub.0003s2315 Capsella rubella HOM05D005575 ORTHO05D007355 2.6e-130 469.2 322 73.0
BcaC05g27989 Brassica carinata HOM05D005575 ORTHO05D007355 5.8e-130 468.0 322 73.3
C05p40000 Brassica napus HOM05D005575 ORTHO05D007355 5.8e-130 468.0 322 73.3
BolC5t32746H Brassica oleracea HOM05D005575 ORTHO05D007355 5.8e-130 468.0 322 73.3
ATR0665G105 Amborella trichopoda HOM05D005575 ORTHO05D007355 2.9e-129 465.7 318 73.6
FAN17G2264 Fragaria x ananassa HOM05D005575 ORTHO05D007355 1.1e-128 463.8 320 72.8
FAN22G1081 Fragaria x ananassa HOM05D005575 ORTHO05D007355 1.1e-128 463.8 323 72.4
A05p25710 Brassica napus HOM05D005575 ORTHO05D007355 1.4e-128 463.4 314 74.8
BraA05t21452Z Brassica rapa HOM05D005575 ORTHO05D007355 1.9e-128 463.0 314 74.8
Migut.G00397 Erythranthe guttata HOM05D005575 ORTHO05D007355 9.3e-128 460.7 318 73.3
SEGI_28733 Sequoiadendron giganteum HOM05D005575 ORTHO05D007355 1.8e-126 456.4 317 71.6
HPP92_006286 Vanilla planifolia HOM05D005575 ORTHO05D007355 3.3e-125 452.2 316 72.8
AUR62008592 Chenopodium quinoa HOM05D005575 ORTHO05D007355 8.2e-124 447.6 313 75.4
Os07g0609766 Oryza sativa ssp. japonica HOM05D005575 ORTHO05D007355 9.0e-123 444.1 321 70.1
SGA_v2.0_scaffold101G29757 Striga asiatica HOM05D005575 ORTHO05D007355 4.5e-122 441.8 318 70.1
Zm00001eb183490 Zea mays HOM05D005575 ORTHO05D007355 7.6e-122 441.0 320 69.4
unitig_62.g23259 Utricularia gibba HOM05D005575 ORTHO05D007355 5.1e-118 428.3 318 67.6
Mapoly0008s0256 Marchantia polymorpha HOM05D005575 ORTHO05D007355 1.4e-110 403.7 315 65.7
SMO230G0018 Selaginella moellendorffii HOM05D005575 ORTHO05D007355 2.2e-105 386.3 316 62.3
AagrBONN_evm.TU.Sc2ySwM_117.635 Anthoceros agrestis HOM05D005575 ORTHO05D007355 1.5e-101 373.6 314 58.6
Pp3c9_410 Physcomitrium patens HOM05D005575 ORTHO05D007355 1.6e-95 353.6 323 58.2
Pp3c15_1060 Physcomitrium patens HOM05D005575 ORTHO05D007355 1.5e-93 347.1 322 57.5
Nn1g02522 Nelumbo nucifera HOM05D005575 ORTHO05D007355 8.2e-92 341.3 199 82.4
SHI00566 Sapria himalayana HOM05D005575 ORTHO05D007355 5.9e-74 282.0 175 76.6
CBR_g10806 Chara braunii HOM05D005575 ORTHO05D007355 1.0e-70 271.2 442 36.7
BcaC05g25996 Brassica carinata HOM05D005575 ORTHO05D007355 8.9e-62 241.5 196 62.8
BolC5t30651H Brassica oleracea HOM05D005575 ORTHO05D007355 3.2e-59 233.0 184 64.1
C05p19490 Brassica napus HOM05D005575 ORTHO05D007355 4.1e-59 232.6 184 64.1
Actinidia05473 Actinidia chinensis HOM05D005575 ORTHO05D007355 5.1e-49 199.1 124 83.9
TAR365G1190 Trochodendron aralioides HOM05D005575 ORTHO05D007355 4.6e-34 149.4 91 82.4
SHI00565 Sapria himalayana HOM05D005575 ORTHO05D007355 9.0e-30 135.2 105 65.7
AagrBONN_evm.TU.Sc2ySwM_344.3391 Anthoceros agrestis HOM05D005575 ORTHO05D007355 5.1e-25 119.4 321 29.0
TAR365G1076 Trochodendron aralioides HOM05D005575 ORTHO05D007355 2.1e-23 114.0 60 95.0
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 2.9e-20 103.6 68 75.0
C08p25570 Brassica napus HOM05D005575 ORTHO05D027690 4.9e-20 102.8 105 57.1
SalBow3G4542 Salvia bowleyana HOM05D005575 ORTHO05D007355 3.5e-18 96.7 57 86.0
Psat7g122560 Pisum sativum HOM05D005575 ORTHO05D007355 2.1e-15 87.4 59 72.9
BolC8t50179H Brassica oleracea HOM05D005575 ORTHO05D027690 1.2e-13 81.6 82 57.3


User provided reference genes

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