Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A719T118 Lonicera japonica HOM05D004913 ORTHO05D006150 1.1e-149 533.9 392 100.0
CSS0025455 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D006150 8.5e-107 391.3 321 73.8
CSS0009777 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D003182 9.1e-101 371.3 322 71.4
vmacro15402 Vaccinium macrocarpon HOM05D004913 ORTHO05D006150 3.8e-99 365.9 399 60.7
GSVIVG01018096001 Vitis vinifera HOM05D004913 ORTHO05D006150 3.2e-98 362.8 392 60.7
Duzib052G0554 Durio zibethinus HOM05D004913 ORTHO05D006150 2.7e-97 359.8 391 60.4
Thecc.04G244000 Theobroma cacao HOM05D004913 ORTHO05D006150 2.3e-96 356.7 391 59.6
Oeu032612.1 Olea europaea HOM05D004913 ORTHO05D006150 6.7e-96 355.1 318 67.0
Manes.15G035800 Manihot esculenta HOM05D004913 ORTHO05D006150 4.8e-94 349.0 297 71.7
MSTRG.21888 Avicennia marina HOM05D004913 ORTHO05D006150 1.1e-93 347.8 321 66.7
SGA_v2.0_scaffold101G29779 Striga asiatica HOM05D004913 ORTHO05D006150 1.1e-93 347.8 319 65.8
Gohir.D10G152000 Gossypium hirsutum HOM05D004913 ORTHO05D006150 1.0e-91 341.3 292 69.9
QL06p015098 Quercus lobata HOM05D004913 ORTHO05D006150 1.7e-91 340.5 294 70.1
CiPaw.02G117800 Carya illinoinensis HOM05D004913 ORTHO05D006150 3.2e-90 336.3 389 58.1
TAR636G2191 Trochodendron aralioides HOM05D004913 ORTHO05D006150 3.2e-90 336.3 318 67.3
Cpa.g.sc58.23 Carica papaya HOM05D004913 ORTHO05D006150 4.2e-90 335.9 396 60.1
Gorai.011G170500 Gossypium raimondii HOM05D004913 ORTHO05D006150 2.1e-89 333.6 301 67.8
Gohir.A10G114500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 3.6e-89 332.8 301 67.8
Duzib151G0562 Durio zibethinus HOM05D004913 ORTHO05D006150 4.7e-89 332.4 392 56.1
MD13G1204100 Malus domestica HOM05D004913 ORTHO05D006150 1.0e-88 331.3 389 62.5
Sabra08G0122700 Salix brachista HOM05D004913 ORTHO05D006150 1.4e-88 330.9 314 66.9
Rhsim02G0032600 Rhododendron simsii HOM05D004913 ORTHO05D006150 2.3e-88 330.1 403 56.6
Dinv44614 Davidia involucrata HOM05D004913 ORTHO05D006150 3.0e-88 329.7 393 61.6
RcHm_v2.0_Chr5g0043971 Rosa chinensis HOM05D004913 ORTHO05D006150 1.5e-87 327.4 390 55.6
Migut.N00232 Erythranthe guttata HOM05D004913 ORTHO05D006150 2.0e-87 327.0 324 65.7
Potri.008G160800 Populus trichocarpa HOM05D004913 ORTHO05D006150 2.6e-87 326.6 319 65.2
Gorai.006G070100 Gossypium raimondii HOM05D004913 ORTHO05D006150 7.4e-87 325.1 290 68.6
Gohir.A09G057300 Gossypium hirsutum HOM05D004913 ORTHO05D006150 2.2e-86 323.6 294 67.7
Sed0027984 Sechium edule HOM05D004913 ORTHO05D006150 4.8e-86 322.4 307 65.1
Eucgr.H03172 Eucalyptus grandis HOM05D004913 ORTHO05D006150 2.4e-85 320.1 313 64.5
MD16G1206200 Malus domestica HOM05D004913 ORTHO05D006150 2.4e-85 320.1 270 68.5
PGR004G2231 Punica granatum HOM05D004913 ORTHO05D006150 2.4e-85 320.1 389 54.8
FvH4_3g24470 Fragaria vesca HOM05D004913 ORTHO05D006150 1.2e-84 317.8 311 64.0
CsaV3_3G012680 Cucumis sativus L. HOM05D004913 ORTHO05D006150 2.0e-84 317.0 311 64.0
Haze_11271 Corylus avellana HOM05D004913 ORTHO05D006150 4.5e-84 315.8 291 68.0
Potri.010G078500 Populus trichocarpa HOM05D004913 ORTHO05D006150 5.9e-84 315.5 298 66.8
MBI11_g38514_MAGBIO Magnolia biondii HOM05D004913 ORTHO05D006150 1.0e-83 314.7 392 54.1
CANSAT78G1520 Cannabis sativa HOM05D004913 ORTHO05D006150 1.3e-83 314.3 414 52.9
THA.LOC104815979 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 3.8e-83 312.8 303 64.0
Sed0018032 Sechium edule HOM05D004913 ORTHO05D003182 5.5e-82 308.9 263 68.4
Ciclev10005381m.g Citrus clementina HOM05D004913 ORTHO05D006150 1.2e-81 307.8 393 58.0
Prupe.1G027200 Prunus persica HOM05D004913 ORTHO05D006150 1.0e-80 304.7 402 53.0
TWI09G0491 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 1.4e-80 304.3 295 64.1
DCAR_030710 Daucus carota HOM05D004913 ORTHO05D006150 1.5e-79 300.8 302 61.9
HanXRQChr12g0381181 Helianthus annuus HOM05D004913 ORTHO05D006150 2.6e-79 300.1 316 61.1
Nn1g02556 Nelumbo nucifera HOM05D004913 ORTHO05D006150 2.6e-79 300.1 395 53.7
MELO3C006479.2 Cucumis melo HOM05D004913 ORTHO05D006150 3.3e-79 299.7 347 57.1
THA.LOC104826068 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 4.4e-79 299.3 290 62.1
FAN11G1852 Fragaria x ananassa HOM05D004913 ORTHO05D006150 7.5e-79 298.5 311 61.7
arahy.Tifrunner.gnm1.ann1.8JLR9N Arachis hypogaea HOM05D004913 ORTHO05D006150 1.7e-78 297.4 319 61.1
VMungo0720G1087 Vigna mungo HOM05D004913 ORTHO05D006150 3.7e-78 296.2 314 60.8
Lsat_1_v5_gn_5_67500 Lactuca sativa HOM05D004913 ORTHO05D006150 4.1e-77 292.7 330 59.1
Sp2g08510 Schrenkiella parvula HOM05D004913 ORTHO05D006150 5.3e-77 292.4 311 59.8
Lj5g0012164 Lotus japonicus HOM05D004913 ORTHO05D006150 2.7e-76 290.0 393 52.9
CAN.G626.13 Capsicum annuum HOM05D004913 ORTHO05D006150 4.5e-76 289.3 394 58.4
Lalb_Chr21g0311951 Lupinus albus HOM05D004913 ORTHO05D006150 4.5e-76 289.3 308 62.7
TWI73G0814 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 7.7e-76 288.5 302 68.2
Gohir.D09G056500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 1.3e-75 287.7 241 70.5
Phvul.003G138434 Phaseolus vulgaris HOM05D004913 ORTHO05D006150 1.7e-75 287.3 314 60.5
BolC7t43157H Brassica oleracea HOM05D004913 ORTHO05D006150 2.9e-75 286.6 395 60.3
ECA233G3913 Erigeron canadensis HOM05D004913 ORTHO05D006150 2.9e-75 286.6 396 55.8
Manes.03G170000 Manihot esculenta HOM05D004913 ORTHO05D006150 3.8e-75 286.2 393 52.2
C07p26280 Brassica napus HOM05D004913 ORTHO05D006150 6.5e-75 285.4 395 60.0
AL37U10050 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 8.5e-75 285.0 305 62.0
EL10Ac4g07493 Beta vulgaris HOM05D004913 ORTHO05D006150 1.1e-74 284.6 316 57.0
Lalb_Chr06g0168981 Lupinus albus HOM05D004913 ORTHO05D006150 2.5e-74 283.5 305 60.7
Sopen09g032190 Solanum pennellii HOM05D004913 ORTHO05D006150 3.2e-74 283.1 393 58.5
Carub.0008s0491 Capsella rubella HOM05D004913 ORTHO05D006150 5.5e-74 282.3 313 62.0
SalBow3G1711 Salvia bowleyana HOM05D004913 ORTHO05D006150 7.2e-74 282.0 316 64.6
Solyc09g083270.4 Solanum lycopersicum HOM05D004913 ORTHO05D006150 7.2e-74 282.0 393 58.3
AL1G13830 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 9.4e-74 281.6 308 59.4
PSO210G5612 Papaver somniferum HOM05D004913 ORTHO05D006150 1.2e-73 281.2 312 61.9
Glyma.10G179800 Glycine max HOM05D004913 ORTHO05D006150 1.0e-72 278.1 278 61.2
Glyma.20G210600 Glycine max HOM05D004913 ORTHO05D006150 1.8e-72 277.3 291 60.1
PGSC0003DMG400006092 Solanum tuberosum HOM05D004913 ORTHO05D006150 5.2e-72 275.8 318 66.4
arahy.Tifrunner.gnm1.ann1.9S1KBE Arachis hypogaea HOM05D004913 ORTHO05D006150 6.8e-72 275.4 318 57.9
AT5G43720 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 3.4e-71 273.1 393 58.0
AT1G04230 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 5.7e-71 272.3 308 57.8
PSO832G0934 Papaver somniferum HOM05D004913 ORTHO05D006150 1.7e-70 270.8 316 60.1
Medtr1g076290 Medicago truncatula HOM05D004913 ORTHO05D006150 4.8e-70 269.2 305 58.0
Peaxi162Scf01416g00120 Petunia axillaris HOM05D004913 ORTHO05D006150 8.3e-70 268.5 395 53.2
Actinidia05471 Actinidia chinensis HOM05D004913 ORTHO05D006150 1.1e-69 268.1 316 63.0
Psat6g114920 Pisum sativum HOM05D004913 ORTHO05D006150 1.2e-68 264.6 391 57.8
FAN25G2316 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.6e-68 264.2 273 64.1
FAN25G1200 Fragaria x ananassa HOM05D004913 ORTHO05D006150 2.0e-68 263.8 273 63.7
Migut.G00417 Erythranthe guttata HOM05D004913 ORTHO05D006150 2.7e-68 263.5 321 56.7
Aqoxy2G03527 Aquilegia oxysepala HOM05D004913 ORTHO05D006150 4.5e-68 262.7 258 65.1
CARHR003560 Cardamine hirsuta HOM05D004913 ORTHO05D006150 1.7e-67 260.8 308 57.1
Nitab4.5_0004203g0050 Nicotiana tabacum HOM05D004913 ORTHO05D006150 2.3e-67 260.4 323 61.9
Nitab4.5_0000525g0090 Nicotiana tabacum HOM05D004913 ORTHO05D006150 2.9e-67 260.0 326 62.9
BolC2t10451H Brassica oleracea HOM05D004913 ORTHO05D006150 1.1e-66 258.1 408 49.8
AUR62041210 Chenopodium quinoa HOM05D004913 ORTHO05D006150 7.2e-66 255.4 307 57.0
Carub.0001s0342 Capsella rubella HOM05D004913 ORTHO05D006150 9.5e-66 255.0 307 55.0
ATR0665G449 Amborella trichopoda HOM05D004913 ORTHO05D006150 1.8e-64 250.8 396 46.0
Ca_09877_v3 Cicer arietinum L. HOM05D004913 ORTHO05D006150 1.8e-64 250.8 264 59.5
FAN21G0973 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.2e-63 248.1 273 61.5
unitig_0.g131 Utricularia gibba HOM05D004913 ORTHO05D006150 2.0e-63 247.3 197 68.0
Aa31LG5G3520 Aethionema arabicum HOM05D004913 ORTHO05D006150 3.4e-63 246.5 203 69.0
BcaC06g31682 Brassica carinata HOM05D004913 ORTHO05D006150 3.4e-63 246.5 394 60.7
CDE07G0872 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 1.3e-62 244.6 297 55.6
Thhalv10003245m.g Eutrema salsugineum HOM05D004913 ORTHO05D006150 1.3e-62 244.6 301 59.5
A06p47740 Brassica napus HOM05D004913 ORTHO05D006150 1.7e-62 244.2 393 56.5
FAN16G1149 Fragaria x ananassa HOM05D004913 ORTHO05D006150 2.8e-62 243.4 222 66.7
BraA06t27642Z Brassica rapa HOM05D004913 ORTHO05D006150 1.8e-61 240.7 395 56.2
AUR62040390 Chenopodium quinoa HOM05D004913 ORTHO05D006150 1.8e-61 240.7 263 58.6
Cc03_g04640 Coffea canephora HOM05D004913 ORTHO05D006150 5.4e-61 239.2 396 52.3
CARHR179900 Cardamine hirsuta HOM05D004913 ORTHO05D006150 1.6e-60 237.7 216 63.9
CDE04G3353 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 6.6e-59 232.3 298 57.7
A02p27910 Brassica napus HOM05D004913 ORTHO05D006150 2.5e-58 230.3 311 55.6
BraA02t07829Z Brassica rapa HOM05D004913 ORTHO05D006150 2.5e-58 230.3 311 55.6
COL.COLO4_15768 Corchorus olitorius HOM05D000979 ORTHO05D003182 6.1e-57 225.7 305 52.1
BcaC03g16589 Brassica carinata HOM05D004913 ORTHO05D006150 4.0e-56 223.0 205 64.4
C02p44080 Brassica napus HOM05D004913 ORTHO05D006150 4.0e-56 223.0 205 64.4
Sc13g0004930 Simmondsia chinensis HOM05D004913 ORTHO05D006150 1.5e-55 221.1 213 71.4
AagrBONN_evm.TU.Sc2ySwM_362.2200 Anthoceros agrestis HOM05D004913 ORTHO05D006150 1.1e-53 214.9 232 56.9
Hund17874 Selenicereus undatus HOM05D004913 ORTHO05D006150 1.5e-50 204.5 225 56.4
SEGI_31281 Sequoiadendron giganteum HOM05D004913 ORTHO05D006150 1.5e-50 204.5 267 50.9
Zm00001eb212900 Zea mays HOM05D004913 ORTHO05D006150 1.5e-50 204.5 308 57.5
HPP92_014140 Vanilla planifolia HOM05D004913 ORTHO05D006150 1.2e-49 201.4 283 54.4
Os03g0797700 Oryza sativa ssp. japonica HOM05D004913 ORTHO05D006150 2.6e-47 193.7 304 53.9
Mapoly0010s0154 Marchantia polymorpha HOM05D004913 ORTHO05D006150 1.3e-46 191.4 329 48.3
Pp3c2_37690 Physcomitrium patens HOM05D004913 ORTHO05D006150 1.1e-45 188.3 361 39.3
CDE06G2453 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 9.2e-45 185.3 249 52.2
AL8G16560 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 1.2e-44 184.9 167 65.9
SMO358G0388 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 8.1e-41 172.2 315 41.6
CDE07G2030 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 7.5e-39 165.6 304 45.1
ClCG05G004680 Citrullus lanatus HOM05D000979 ORTHO05D003182 4.9e-38 162.9 296 44.9
SHI00581 Sapria himalayana HOM05D004913 ORTHO05D006150 6.4e-38 162.5 307 44.3
BcaC06g34634 Brassica carinata HOM05D004913 ORTHO05D006150 8.3e-38 162.2 151 66.2
PSO210G2862 Papaver somniferum HOM05D004913 ORTHO05D006150 1.1e-37 161.8 311 43.1
PSO238G0009 Papaver somniferum HOM05D004913 ORTHO05D006150 9.2e-37 158.7 318 42.5
TAR365G1176 Trochodendron aralioides HOM05D004913 ORTHO05D006150 6.4e-30 136.0 242 45.0
Ah.13g071540 Amaranthus hybridus HOM05D004913 ORTHO05D006150 1.1e-29 135.2 178 51.1
CBR_g525 Chara braunii HOM05D004913 ORTHO05D006150 4.7e-25 119.8 142 48.6
SMO347G0406 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 6.4e-22 109.4 148 47.3
BcaC06g34635 Brassica carinata HOM05D004913 ORTHO05D006150 3.5e-20 103.6 224 56.2
Ah.13g071550 Amaranthus hybridus HOM05D004913 ORTHO05D006150 4.6e-20 103.2 100 62.0
Zm00001eb034960 Zea mays HOM05D004913 ORTHO05D006150 9.9e-15 85.5 87 59.8
Gorai.003G091900 Gossypium raimondii HOM05D004913 ORTHO05D006150 3.4e-07 60.5 59 66.1
MCO11G351 Micromonas commoda HOM05D004913 ORTHO05D006150 2.9e-06 57.4 134 35.8
Gohir.D08G197400 Gossypium hirsutum HOM05D004913 ORTHO05D006150 4.9e-06 56.6 57 64.9


User provided reference genes

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