Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A686T58 Lonicera japonica HOM05D006432 ORTHO05D008257 3.7e-117 424.9 210 100.0
Rhsim02G0041500 Rhododendron simsii HOM05D006432 ORTHO05D008257 3.9e-90 335.1 200 82.5
Hma1.2p1_0385F.1_g141240 Hydrangea macrophylla HOM05D006432 ORTHO05D008257 8.6e-90 334.0 200 81.5
Medtr1g075660 Medicago truncatula HOM05D006432 ORTHO05D008257 9.5e-89 330.5 200 80.0
GSVIVG01027851001 Vitis vinifera HOM05D006432 ORTHO05D008257 1.2e-88 330.1 200 81.5
Glyma.20G207100 Glycine max HOM05D006432 ORTHO05D008257 1.6e-88 329.7 200 81.0
TPR.G10084 Trifolium pratense HOM05D006432 ORTHO05D008257 1.6e-88 329.7 201 79.6
Cfa014742 Carpinus fangiana HOM05D006432 ORTHO05D008257 3.6e-88 328.6 200 80.0
Haze_11417 Corylus avellana HOM05D006432 ORTHO05D008257 4.7e-88 328.2 200 80.5
Sc13g0005860 Simmondsia chinensis HOM05D006432 ORTHO05D008257 4.7e-88 328.2 200 79.5
CsaV3_3G011940 Cucumis sativus L. HOM05D006432 ORTHO05D008257 8.0e-88 327.4 200 80.0
Migut.N00285 Erythranthe guttata HOM05D006432 ORTHO05D008257 8.0e-88 327.4 200 80.5
VMungo0720G1276 Vigna mungo HOM05D006432 ORTHO05D008257 1.4e-87 326.6 200 79.5
CSS0006599 Camellia sinensis var. sinensis HOM05D006432 ORTHO05D008257 1.8e-87 326.2 200 80.5
TWI73G0471 Tripterygium wilfordii HOM05D006432 ORTHO05D008257 1.8e-87 326.2 200 80.0
FAN12G0128 Fragaria x ananassa HOM05D006432 ORTHO05D008257 2.3e-87 325.9 200 79.0
ClCG05G004210 Citrullus lanatus HOM05D006432 ORTHO05D008257 3.1e-87 325.5 200 80.0
AUR62015546 Chenopodium quinoa HOM05D006432 ORTHO05D008257 4.0e-87 325.1 198 78.3
HanXRQChr14g0434951 Helianthus annuus HOM05D006432 ORTHO05D008257 4.0e-87 325.1 200 80.0
Actinidia39914 Actinidia chinensis HOM05D006432 ORTHO05D008257 5.2e-87 324.7 200 78.5
Psat6g122560 Pisum sativum HOM05D006432 ORTHO05D008257 5.2e-87 324.7 200 78.5
Solyc09g090330.3 Solanum lycopersicum HOM05D006432 ORTHO05D008257 5.2e-87 324.7 200 79.0
FAN17G1327 Fragaria x ananassa HOM05D006432 ORTHO05D008257 6.8e-87 324.3 200 78.5
Nitab4.5_0000596g0040 Nicotiana tabacum HOM05D006432 ORTHO05D008257 6.8e-87 324.3 200 79.0
CAN.G220.38 Capsicum annuum HOM05D006432 ORTHO05D008257 8.9e-87 323.9 200 78.0
AUR62002163 Chenopodium quinoa HOM05D006432 ORTHO05D008257 8.9e-87 323.9 199 76.9
Eucgr.H00144 Eucalyptus grandis HOM05D006432 ORTHO05D008257 1.2e-86 323.6 200 80.0
FAN22G0893 Fragaria x ananassa HOM05D006432 ORTHO05D008257 1.2e-86 323.6 200 78.0
MBI07_g31085_MAGBIO Magnolia biondii HOM05D006432 ORTHO05D008257 1.2e-86 323.6 200 77.5
Ah.13g072590 Amaranthus hybridus HOM05D006432 ORTHO05D008257 1.5e-86 323.2 203 76.8
Sabra08G0128900 Salix brachista HOM05D006432 ORTHO05D008257 1.5e-86 323.2 200 77.5
PGSC0003DMG400017164 Solanum tuberosum HOM05D006432 ORTHO05D008257 1.5e-86 323.2 200 78.5
Prupe.1G042200 Prunus persica HOM05D006432 ORTHO05D008257 2.0e-86 322.8 200 79.0
Sopen09g033230 Solanum pennellii HOM05D006432 ORTHO05D008257 2.0e-86 322.8 198 78.8
Nitab4.5_0000044g0560 Nicotiana tabacum HOM05D006432 ORTHO05D008257 2.6e-86 322.4 205 77.1
QL06p019206 Quercus lobata HOM05D006432 ORTHO05D008257 2.6e-86 322.4 199 78.4
Lalb_Chr21g0312161 Lupinus albus HOM05D006432 ORTHO05D008257 4.4e-86 321.6 200 78.0
MD16G1221800 Malus domestica HOM05D006432 ORTHO05D008257 4.4e-86 321.6 200 78.5
RcHm_v2.0_Chr4g0394281 Rosa chinensis HOM05D006432 ORTHO05D008257 4.4e-86 321.6 200 78.5
Potri.008G169100 Populus trichocarpa HOM05D006432 ORTHO05D008257 5.8e-86 321.2 200 77.0
PGR031G2997 Punica granatum HOM05D006432 ORTHO05D008257 5.8e-86 321.2 200 79.5
vmacro15458 Vaccinium macrocarpon HOM05D006432 ORTHO05D008257 5.8e-86 321.2 200 80.0
CiPaw.01G181700 Carya illinoinensis HOM05D006432 ORTHO05D008257 7.5e-86 320.9 200 78.5
Manes.15G043100 Manihot esculenta HOM05D006432 ORTHO05D008257 9.8e-86 320.5 200 77.5
Aqoxy5G00185 Aquilegia oxysepala HOM05D006432 ORTHO05D008257 2.2e-85 319.3 200 76.5
Duzib052G0458 Durio zibethinus HOM05D006432 ORTHO05D008257 2.2e-85 319.3 208 75.0
Thecc.04G259000 Theobroma cacao HOM05D006432 ORTHO05D008257 2.2e-85 319.3 200 77.5
Dinv27072 Davidia involucrata HOM05D006432 ORTHO05D008257 2.9e-85 318.9 200 79.5
Atru.chr4.2005 Acer truncatum HOM05D006432 ORTHO05D008257 4.9e-85 318.2 202 77.2
Sed0005439 Sechium edule HOM05D006432 ORTHO05D008257 4.9e-85 318.2 200 77.0
MELO3C006407.2 Cucumis melo HOM05D006432 ORTHO05D008257 1.4e-84 316.6 200 79.0
Lalb_Chr06g0169201 Lupinus albus HOM05D006432 ORTHO05D008257 1.4e-84 316.6 201 77.6
COL.COLO4_15916 Corchorus olitorius HOM05D006432 ORTHO05D008257 1.9e-84 316.2 200 78.0
Lj5g0003574 Lotus japonicus HOM05D006432 ORTHO05D008257 1.9e-84 316.2 201 77.1
Hund11907 Selenicereus undatus HOM05D006432 ORTHO05D008257 1.9e-84 316.2 200 76.5
Ca_09849_v3 Cicer arietinum L. HOM05D006432 ORTHO05D008257 3.2e-84 315.5 200 75.5
Ciclev10007095m.g Citrus clementina HOM05D006432 ORTHO05D008257 3.2e-84 315.5 200 77.5
Cc03_g05780 Coffea canephora HOM05D006432 ORTHO05D008257 3.2e-84 315.5 200 77.0
Peaxi162Scf00392g00732 Petunia axillaris HOM05D006432 ORTHO05D008257 3.2e-84 315.5 200 77.5
CDE04G3487 Ceratophyllum demersum HOM05D006432 ORTHO05D008257 4.1e-84 315.1 200 76.0
Lsat_1_v5_gn_2_40021 Lactuca sativa HOM05D006432 ORTHO05D008257 5.4e-84 314.7 200 76.5
Actinidia11356 Actinidia chinensis HOM05D006432 ORTHO05D008257 2.7e-83 312.4 200 77.0
ECA240G3223 Erigeron canadensis HOM05D002023 ORTHO05D002049 3.5e-83 312.0 197 78.7
EL10Ac3g04982 Beta vulgaris HOM05D006432 ORTHO05D008257 6.0e-83 311.2 200 74.5
MSTRG.9882 Avicennia marina HOM05D006432 ORTHO05D008257 7.8e-83 310.8 200 75.5
Os11g0595200 Oryza sativa ssp. japonica HOM05D006432 ORTHO05D008257 7.8e-83 310.8 202 75.2
ATR0582G319 Amborella trichopoda HOM05D006432 ORTHO05D008257 1.0e-82 310.5 198 77.8
Zm00001eb114860 Zea mays HOM05D006432 ORTHO05D008257 1.7e-82 309.7 201 75.6
Oeu059409.1 Olea europaea HOM05D006432 ORTHO05D008257 1.6e-80 303.1 200 75.5
PSO478G2331 Papaver somniferum HOM05D006432 ORTHO05D008257 1.6e-80 303.1 200 72.0
PSO017G5682 Papaver somniferum HOM05D006432 ORTHO05D008257 2.1e-80 302.8 200 71.5
CANSAT78G0744 Cannabis sativa HOM05D006432 ORTHO05D008257 6.2e-80 301.2 202 73.8
A07p09040 Brassica napus HOM05D006432 ORTHO05D008257 8.0e-80 300.8 200 72.5
Gohir.D09G229900 Gossypium hirsutum HOM05D006432 ORTHO05D008257 8.0e-80 300.8 200 72.5
Aa31LG8G9890 Aethionema arabicum HOM05D006432 ORTHO05D008257 1.1e-79 300.4 200 71.5
Gorai.006G252600 Gossypium raimondii HOM05D006432 ORTHO05D008257 1.1e-79 300.4 200 72.5
Thhalv10021276m.g Eutrema salsugineum HOM05D006432 ORTHO05D008257 1.4e-79 300.1 200 71.5
THA.LOC104804760 Tarenaya hassleriana HOM05D006432 ORTHO05D008257 1.8e-79 299.7 200 70.5
BolC7t41898H Brassica oleracea HOM05D006432 ORTHO05D008257 2.3e-79 299.3 200 72.0
Gohir.A09G228800 Gossypium hirsutum HOM05D006432 ORTHO05D008257 3.1e-79 298.9 200 72.0
BcaC06g35517 Brassica carinata HOM05D006432 ORTHO05D008257 4.0e-79 298.5 200 72.0
AL3G38060 Arabidopsis lyrata HOM05D006432 ORTHO05D008257 6.8e-79 297.7 200 71.5
BraA07t28698Z Brassica rapa HOM05D006432 ORTHO05D008257 8.9e-79 297.4 200 71.5
Carub.0003s2366 Capsella rubella HOM05D006432 ORTHO05D008257 1.2e-78 297.0 200 72.0
AT3G23400 Arabidopsis thaliana HOM05D006432 ORTHO05D008257 1.5e-78 296.6 200 71.5
C07p14010 Brassica napus HOM05D006432 ORTHO05D008257 2.0e-78 296.2 200 71.5
Sp3g21070 Schrenkiella parvula HOM05D006432 ORTHO05D008257 4.4e-78 295.0 200 71.0
CARHR099370 Cardamine hirsuta HOM05D006432 ORTHO05D008257 1.3e-77 293.5 200 70.0
Hma1.2p1_0385F.1_g141230 Hydrangea macrophylla HOM05D006432 ORTHO05D008257 1.7e-74 283.1 172 80.8
Glyma.10G182900 Glycine max HOM05D006432 ORTHO05D008257 3.9e-74 282.0 173 78.0
Nn3g19719 Nelumbo nucifera HOM05D006432 ORTHO05D008257 1.5e-73 280.0 200 70.0
MD13G1216500 Malus domestica HOM05D006432 ORTHO05D008257 1.8e-71 273.1 198 68.7
HPP92_005402 Vanilla planifolia HOM05D006432 ORTHO05D008257 1.3e-69 266.9 197 68.0
Pp3c11_17240 Physcomitrium patens HOM05D006432 ORTHO05D008257 7.8e-67 257.7 200 61.5
SEGI_38471 Sequoiadendron giganteum HOM05D006432 ORTHO05D008257 6.2e-64 248.1 197 61.4
AagrBONN_evm.TU.Sc2ySwM_228.2035 Anthoceros agrestis HOM05D006432 ORTHO05D008257 6.4e-61 238.0 203 57.6
unitig_0.g1188 Utricularia gibba HOM05D006432 ORTHO05D008257 6.4e-61 238.0 174 69.0
SMO141G0176 Selaginella moellendorffii HOM05D006432 ORTHO05D008257 3.5e-59 232.3 197 56.9
Nn1g02871 Nelumbo nucifera HOM05D006432 ORTHO05D008257 4.0e-55 218.8 148 72.3
Mapoly0012s0134 Marchantia polymorpha HOM05D006432 ORTHO05D008257 9.3e-52 207.6 197 53.8
Oeu055241.1 Olea europaea HOM05D000508 ORTHO05D000371 3.5e-51 205.7 200 56.5
BcaB05g22938 Brassica carinata HOM05D006432 ORTHO05D008257 3.0e-50 202.6 167 61.1
Dinv29840 Davidia involucrata HOM05D006432 ORTHO05D008257 2.0e-46 189.9 109 84.4
Cpa.g.sc44.36 Carica papaya HOM05D006432 ORTHO05D008257 2.6e-46 189.5 117 76.1
SGA_v2.0_scaffold43G16214 Striga asiatica HOM05D006432 ORTHO05D008257 2.2e-45 186.4 119 74.8
arahy.Tifrunner.gnm1.ann1.508QQU Arachis hypogaea HOM05D006432 ORTHO05D008257 1.9e-44 183.3 119 71.4
arahy.Tifrunner.gnm1.ann1.X8C4EZ Arachis hypogaea HOM05D006432 ORTHO05D008257 2.4e-44 183.0 119 70.6
CBR_g30839 Chara braunii HOM05D006432 ORTHO05D008257 3.7e-40 169.1 211 43.6
CDE03G0089 Ceratophyllum demersum HOM05D006432 ORTHO05D008257 1.4e-39 167.2 119 68.9
SGA_v2.0_scaffold370G50119 Striga asiatica HOM05D006432 ORTHO05D008257 1.7e-37 160.2 110 68.2
FvH4_4g04000 Fragaria vesca HOM05D003789 ORTHO05D004158 3.3e-33 146.0 95 75.8
Phvul.010G070111 Phaseolus vulgaris HOM05D006432 ORTHO05D008257 3.7e-32 142.5 85 83.5
Cpa.g.sc44.33 Carica papaya HOM05D006432 ORTHO05D008257 6.9e-31 138.3 83 83.1
Cre02.g143667 Chlamydomonas reinhardtii HOM05D006432 ORTHO05D008257 4.2e-28 129.0 265 35.1
Nn1g02875 Nelumbo nucifera HOM05D006432 ORTHO05D008257 4.2e-28 129.0 85 77.6
BcaB04g17238 Brassica carinata HOM05D006432 ORTHO05D008257 7.4e-25 118.2 112 53.6
BcaB02g08931 Brassica carinata HOM05D006432 ORTHO05D008257 1.3e-24 117.5 107 53.3
BcaB01g01688 Brassica carinata HOM05D006432 ORTHO05D008257 4.1e-23 112.5 119 47.9
MCO05G338 Micromonas commoda HOM05D006432 ORTHO05D008257 7.2e-20 101.7 207 33.8
Os05g0304200 Oryza sativa ssp. japonica HOM05D006432 ORTHO05D008257 6.3e-16 88.6 73 61.6
BcaB07g33946 Brassica carinata HOM05D006432 ORTHO05D008257 1.7e-13 80.5 67 55.2
Sabra10G0037800 Salix brachista HOM05D006432 ORTHO05D008257 1.1e-09 67.8 41 70.7
PRCOL_00002195 Prasinoderma coloniale HOM05D006432 ORTHO05D008257 2.0e-09 67.0 254 28.3
ATR0684G013 Amborella trichopoda HOM05D003483 ORTHO05D004101 4.4e-09 65.9 193 30.1
Nitab4.5_0002064g0060 Nicotiana tabacum HOM05D005663 ORTHO05D007258 2.8e-08 63.2 197 27.4
MBI03_g28296_MAGBIO Magnolia biondii HOM05D003483 ORTHO05D004101 3.7e-08 62.8 190 31.1
arahy.Tifrunner.gnm1.ann1.G5V2PN Arachis hypogaea HOM05D003483 ORTHO05D004101 8.2e-08 61.6 193 29.0
Manes.13G086600 Manihot esculenta HOM05D005663 ORTHO05D007258 8.2e-08 61.6 198 27.3
CDE02G1133 Ceratophyllum demersum HOM05D003483 ORTHO05D004101 1.4e-07 60.8 196 30.1
Cre03.g197650 Chlamydomonas reinhardtii HOM05D006432 ORTHO05D044141 1.4e-07 60.8 204 26.5
Solyc11g005340.3 Solanum lycopersicum HOM05D005663 ORTHO05D007258 1.4e-07 60.8 208 26.4
TAR376G1167 Trochodendron aralioides HOM05D003483 ORTHO05D004101 1.8e-07 60.5 194 29.9
arahy.Tifrunner.gnm1.ann1.MUYK2J Arachis hypogaea HOM05D003483 ORTHO05D004101 2.4e-07 60.1 193 26.9
Glyma.15G047700 Glycine max HOM05D003483 ORTHO05D004101 3.1e-07 59.7 193 27.5
Sopen11g001350 Solanum pennellii HOM05D005663 ORTHO05D007258 3.1e-07 59.7 208 26.4
CARHR203580 Cardamine hirsuta HOM05D005663 ORTHO05D007258 4.1e-07 59.3 197 25.4
Glyma.08G185000 Glycine max HOM05D003483 ORTHO05D004101 4.1e-07 59.3 193 27.5
Zm00001eb054390 Zea mays HOM05D003483 ORTHO05D004101 4.1e-07 59.3 195 29.2
Cre11.g478850 Chlamydomonas reinhardtii HOM05D003483 ORTHO05D004101 5.3e-07 58.9 201 27.4
Ca_00085_v3 Cicer arietinum L. HOM05D003483 ORTHO05D004101 5.3e-07 58.9 194 28.9
PGSC0003DMG400003986 Solanum tuberosum HOM05D005663 ORTHO05D007258 5.3e-07 58.9 191 26.7
THA.LOC104825685 Tarenaya hassleriana HOM05D003483 ORTHO05D004101 9.1e-07 58.2 194 27.8
Aqoxy3G02633 Aquilegia oxysepala HOM05D005663 ORTHO05D007258 1.2e-06 57.8 194 26.3
CAN.G345.5 Capsicum annuum HOM05D006432 ORTHO05D008257 1.5e-06 57.4 44 63.6
VMungo0540G1714 Vigna mungo HOM05D003483 ORTHO05D004101 1.5e-06 57.4 193 27.5
Medtr2g007640 Medicago truncatula HOM05D003483 ORTHO05D004101 2.6e-06 56.6 193 26.9
PRCOL_00005152 Prasinoderma coloniale HOM05D004534 ORTHO05D005413 3.5e-06 56.2 192 27.1
TPR.G2176 Trifolium pratense HOM05D005663 ORTHO05D007258 3.5e-06 56.2 197 26.4
PRCOL_00005437 Prasinoderma coloniale HOM05D003483 ORTHO05D004101 4.5e-06 55.8 195 26.7
AT5G09820 Arabidopsis thaliana HOM05D005663 ORTHO05D007258 7.7e-06 55.1 197 24.9
Carub.0006s0824 Capsella rubella HOM05D005663 ORTHO05D007258 7.7e-06 55.1 197 25.4
MD15G1421400 Malus domestica HOM05D003483 ORTHO05D004101 7.7e-06 55.1 193 28.0
Psat7g048760 Pisum sativum HOM05D005663 ORTHO05D007258 7.7e-06 55.1 203 27.1


User provided reference genes

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