Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A367T10 Lonicera japonica HOM05D004214 ORTHO05D004963 1.6e-123 446.0 218 100.0
Lj8A428G27 Lonicera japonica HOM05D004214 ORTHO05D004963 3.1e-90 335.5 176 93.8
Lj3A346G23 Lonicera japonica HOM05D004214 ORTHO05D004963 1.0e-85 320.5 205 80.0
Lj3A369T15 Lonicera japonica HOM05D004214 ORTHO05D004963 2.0e-81 306.2 152 97.4
Lj8A426T27 Lonicera japonica HOM05D004214 ORTHO05D004963 6.0e-78 294.7 152 94.1
Lj3A352G14 Lonicera japonica HOM05D004214 ORTHO05D004963 9.9e-73 277.3 146 93.2
Lj4P113T24 Lonicera japonica HOM05D004214 ORTHO05D004963 2.7e-70 269.2 146 89.7
Lj3A350G16 Lonicera japonica HOM05D004214 ORTHO05D004963 1.3e-67 260.4 218 66.5
Oeu010226.1 Olea europaea HOM05D004214 ORTHO05D004963 1.5e-57 226.9 255 48.6
Oeu010227.1 Olea europaea HOM05D004214 ORTHO05D004963 1.5e-57 226.9 255 48.6
Dinv11505 Davidia involucrata HOM05D004214 ORTHO05D004963 9.9e-57 224.2 207 58.5
Hma1.2p1_0409F.1_g146710 Hydrangea macrophylla HOM05D004214 ORTHO05D004963 1.3e-56 223.8 256 49.2
MSTRG.23916 Avicennia marina HOM05D004214 ORTHO05D004963 2.9e-56 222.6 195 57.9
GSVIVG01011460001 Vitis vinifera HOM05D004214 ORTHO05D004963 4.9e-56 221.9 199 58.3
Actinidia06102 Actinidia chinensis HOM05D004214 ORTHO05D004963 8.4e-56 221.1 231 50.2
Migut.H00677 Erythranthe guttata HOM05D004214 ORTHO05D004963 1.1e-55 220.7 201 56.7
CSS0015906 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.6e-54 216.9 192 57.3
CSS0019671 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.6e-54 216.9 192 57.3
TAR629G3302 Trochodendron aralioides HOM05D004214 ORTHO05D004963 1.6e-54 216.9 192 56.8
Eucgr.I02016 Eucalyptus grandis HOM05D004214 ORTHO05D004963 2.1e-54 216.5 196 56.6
EL10Ac2g03019 Beta vulgaris HOM05D004214 ORTHO05D004963 2.3e-53 213.0 192 53.1
TWI60G1366 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 3.0e-53 212.6 201 52.7
Sc10g0003430 Simmondsia chinensis HOM05D004214 ORTHO05D004963 8.7e-53 211.1 202 52.0
ECA232G2753 Erigeron canadensis HOM05D004214 ORTHO05D005214 1.1e-52 210.7 232 48.3
Cpa.g.sc14.113 Carica papaya HOM05D004214 ORTHO05D004963 2.5e-52 209.5 199 54.8
Cc07_g03630 Coffea canephora HOM05D004214 ORTHO05D004963 2.5e-52 209.5 236 47.9
HanXRQChr15g0487741 Helianthus annuus HOM05D004214 ORTHO05D004963 2.5e-52 209.5 193 53.4
Lsat_1_v5_gn_4_169740 Lactuca sativa HOM05D004214 ORTHO05D004963 2.5e-52 209.5 204 53.4
SalBow1G5883 Salvia bowleyana HOM05D004214 ORTHO05D004963 4.3e-52 208.8 194 54.6
PGSC0003DMG400025136 Solanum tuberosum HOM05D004214 ORTHO05D004963 9.6e-52 207.6 198 52.0
Ciclev10012515m.g Citrus clementina HOM05D004214 ORTHO05D004963 1.3e-51 207.2 216 50.9
Lj3A364T22 Lonicera japonica HOM05D004214 ORTHO05D004963 1.6e-51 206.8 206 57.8
Sopen02g016310 Solanum pennellii HOM05D004214 ORTHO05D004963 2.1e-51 206.5 198 52.0
Solyc02g067120.4 Solanum lycopersicum HOM05D004214 ORTHO05D004963 2.8e-51 206.1 209 50.2
CSS0036969 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 3.7e-51 205.7 196 56.6
Nitab4.5_0000212g0090 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.1e-50 204.1 172 58.1
Atru.chr8.322 Acer truncatum HOM05D004214 ORTHO05D004963 3.1e-50 202.6 193 53.9
BcaB06g27341 Brassica carinata HOM05D004214 ORTHO05D004963 5.3e-50 201.8 159 61.6
Manes.02G048700 Manihot esculenta HOM05D004214 ORTHO05D004963 5.3e-50 201.8 206 51.9
Potri.017G087500 Populus trichocarpa HOM05D004214 ORTHO05D004963 9.0e-50 201.1 203 52.2
CARHR262760 Cardamine hirsuta HOM05D004214 ORTHO05D004963 4.5e-49 198.7 160 58.1
THA.LOC104805483 Tarenaya hassleriana HOM05D004214 ORTHO05D004963 4.5e-49 198.7 194 51.5
TWI34G0797 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 4.5e-49 198.7 201 50.7
TWI34G1333 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 4.5e-49 198.7 201 50.7
unitig_62.g23442 Utricularia gibba HOM05D004214 ORTHO05D004963 4.5e-49 198.7 212 50.0
C04p45970 Brassica napus HOM05D004214 ORTHO05D004963 7.6e-49 198.0 159 60.4
BolC4t26180H Brassica oleracea HOM05D004214 ORTHO05D004963 7.6e-49 198.0 159 60.4
Carub.0007s3642 Capsella rubella HOM05D004214 ORTHO05D004963 7.6e-49 198.0 149 62.4
BraA04t16893Z Brassica rapa HOM05D004214 ORTHO05D004963 1.0e-48 197.6 159 60.4
AL7G50770 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 1.3e-48 197.2 151 60.9
A04p12290 Brassica napus HOM05D004214 ORTHO05D004963 2.9e-48 196.1 159 60.4
Sp7g02430 Schrenkiella parvula HOM05D004214 ORTHO05D004963 2.9e-48 196.1 159 59.1
Thhalv10027904m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 1.1e-47 194.1 148 59.5
CARHR262800 Cardamine hirsuta HOM05D004214 ORTHO05D004963 1.4e-47 193.7 148 60.1
Rhsim10G0035900 Rhododendron simsii HOM05D004214 ORTHO05D004963 3.5e-46 189.1 211 46.9
Peaxi162Scf00629g00121 Petunia axillaris HOM05D004214 ORTHO05D004963 4.6e-46 188.7 191 51.8
DCAR_011079 Daucus carota HOM05D004214 ORTHO05D004963 1.0e-45 187.6 190 52.6
Duzib147G0992 Durio zibethinus HOM05D004214 ORTHO05D004963 1.0e-45 187.6 206 46.1
Thhalv10028063m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 1.0e-45 187.6 148 56.8
Nitab4.5_0010283g0010 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.3e-45 187.2 201 49.8
Thecc.04G087300 Theobroma cacao HOM05D004214 ORTHO05D004963 3.0e-45 186.0 216 43.5
Sp7g02440 Schrenkiella parvula HOM05D004214 ORTHO05D004963 1.5e-44 183.7 144 58.3
AUR62018111 Chenopodium quinoa HOM05D004214 ORTHO05D004963 2.5e-44 183.0 192 45.8
BraA04t16892Z Brassica rapa HOM05D004214 ORTHO05D004963 4.3e-44 182.2 170 52.4
BcaB06g27320 Brassica carinata HOM05D004214 ORTHO05D004963 7.4e-44 181.4 170 52.4
Hund15587 Selenicereus undatus HOM05D004214 ORTHO05D004963 7.4e-44 181.4 192 47.4
C04p45960 Brassica napus HOM05D004214 ORTHO05D004963 9.6e-44 181.0 170 52.4
BolC4t26179H Brassica oleracea HOM05D004214 ORTHO05D004963 9.6e-44 181.0 170 52.4
CAN.G979.5 Capsicum annuum HOM05D004214 ORTHO05D004963 9.6e-44 181.0 172 53.5
AT5G39520 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 1.3e-43 180.6 191 46.6
A04p12270 Brassica napus HOM05D004214 ORTHO05D004963 1.3e-43 180.6 144 55.6
BraA04t16891Z Brassica rapa HOM05D004214 ORTHO05D004963 1.3e-43 180.6 144 55.6
Carub.0007s3643 Capsella rubella HOM05D004214 ORTHO05D004963 1.3e-43 180.6 144 56.2
Rhsim10G0035800 Rhododendron simsii HOM05D004214 ORTHO05D004963 1.6e-43 180.3 196 48.5
AL7G50790 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 3.7e-43 179.1 144 54.9
BcaB06g27340 Brassica carinata HOM05D004214 ORTHO05D004963 3.7e-43 179.1 166 52.4
CARHR262810 Cardamine hirsuta HOM05D004214 ORTHO05D004963 4.8e-43 178.7 144 55.6
A04p12280 Brassica napus HOM05D004214 ORTHO05D004963 8.2e-43 177.9 170 51.8
COL.COLO4_12225 Corchorus olitorius HOM05D004214 ORTHO05D004963 8.2e-43 177.9 164 49.4
Gorai.001G240700 Gossypium raimondii HOM05D004214 ORTHO05D004963 8.2e-43 177.9 192 46.4
ATR0564G445 Amborella trichopoda HOM05D004214 ORTHO05D004963 1.4e-42 177.2 201 44.8
CDE02G0918 Ceratophyllum demersum HOM05D004214 ORTHO05D004963 5.3e-42 175.3 242 41.3
Gohir.D07G212700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 5.3e-42 175.3 145 54.5
QL02p084825 Quercus lobata HOM05D004214 ORTHO05D004963 6.5e-40 168.3 194 45.4
QL02p084872 Quercus lobata HOM05D004214 ORTHO05D004963 1.9e-39 166.8 188 43.6
AT5G39530 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 3.2e-39 166.0 125 60.8
SGA_v2.0_scaffold413G51175 Striga asiatica HOM05D004214 ORTHO05D004963 3.2e-39 166.0 201 45.3
CAN.G206.176 Capsicum annuum HOM05D004214 ORTHO05D004963 1.6e-38 163.7 167 46.1
Nitab4.5_0000568g0170 Nicotiana tabacum HOM05D004214 ORTHO05D004963 2.1e-38 163.3 199 41.7
PGSC0003DMG401001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 2.3e-37 159.8 145 51.0
AUR62034445 Chenopodium quinoa HOM05D004214 ORTHO05D004963 3.0e-37 159.5 159 47.8
SEGI_32476 Sequoiadendron giganteum HOM05D004214 ORTHO05D004963 3.0e-37 159.5 199 40.2
PGSC0003DMG402001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 1.5e-36 157.1 145 49.7
PSO478G0939 Papaver somniferum HOM05D004214 ORTHO05D004963 1.9e-36 156.8 144 52.1
PSO017G4463 Papaver somniferum HOM05D004214 ORTHO05D004963 4.3e-36 155.6 144 52.1
Solyc02g088270.3 Solanum lycopersicum HOM05D004214 ORTHO05D004963 4.3e-36 155.6 144 50.0
Sopen02g032950 Solanum pennellii HOM05D004214 ORTHO05D004963 4.8e-35 152.1 144 49.3
TPR.G14395 Trifolium pratense HOM05D004214 ORTHO05D004963 4.1e-34 149.1 149 46.3
PGR004G0346 Punica granatum HOM05D004214 ORTHO05D004963 3.4e-33 146.0 149 52.3
Ca_04853_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 4.5e-33 145.6 153 45.8
TPR.G26214 Trifolium pratense HOM05D004214 ORTHO05D004963 1.7e-32 143.7 148 43.2
Lj2g0016815 Lotus japonicus HOM05D004214 ORTHO05D004963 2.9e-32 142.9 157 44.6
Medtr6g012830 Medicago truncatula HOM05D004214 ORTHO05D004963 1.4e-31 140.6 147 44.9
MD09G1055000 Malus domestica HOM05D004214 ORTHO05D004963 3.2e-31 139.4 156 43.6
arahy.Tifrunner.gnm1.ann1.55PBKN Arachis hypogaea HOM05D004214 ORTHO05D004963 5.5e-31 138.7 146 43.2
Glyma.13G060852 Glycine max HOM05D004214 ORTHO05D004963 7.2e-31 138.3 165 41.2
QL02p084854 Quercus lobata HOM05D004214 ORTHO05D004963 1.6e-30 137.1 167 40.1
arahy.Tifrunner.gnm1.ann1.7SZ544 Arachis hypogaea HOM05D004214 ORTHO05D004963 2.7e-30 136.3 145 42.8
Phvul.004G031400 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 3.6e-30 136.0 147 41.5
Nn4g23269 Nelumbo nucifera HOM05D004214 ORTHO05D004963 1.0e-29 134.4 136 50.7
VMungo0464G0566 Vigna mungo HOM05D004214 ORTHO05D004963 1.4e-29 134.0 147 42.2
Lalb_Chr06g0175181 Lupinus albus HOM05D004214 ORTHO05D004963 3.0e-29 132.9 145 42.8
FAN14G4990 Fragaria x ananassa HOM05D004214 ORTHO05D004963 5.1e-29 132.1 149 45.6
BcaB06g27319 Brassica carinata HOM05D004214 ORTHO05D004963 2.0e-28 130.2 192 38.5
Prupe.3G263500 Prunus persica HOM05D004214 ORTHO05D004963 2.0e-28 130.2 156 42.9
Zm00001eb402430 Zea mays HOM05D004214 ORTHO05D004963 3.3e-28 129.4 222 33.8
Glyma.19G025600 Glycine max HOM05D004214 ORTHO05D004963 5.7e-28 128.6 165 40.0
FAN05G5298 Fragaria x ananassa HOM05D004214 ORTHO05D004963 9.7e-28 127.9 192 38.5
ClCG09G017980 Citrullus lanatus HOM05D004214 ORTHO05D004963 1.3e-27 127.5 146 41.8
Lj2g0002943 Lotus japonicus HOM05D004214 ORTHO05D004963 1.3e-27 127.5 146 42.5
Os03g0168300 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 3.7e-27 125.9 149 42.3
Peaxi162Scf00166g01050 Petunia axillaris HOM05D004214 ORTHO05D004963 1.1e-26 124.4 199 35.2
RcHm_v2.0_Chr2g0167291 Rosa chinensis HOM05D004214 ORTHO05D004963 1.1e-26 124.4 145 44.1
Psat1g070480 Pisum sativum HOM05D004214 ORTHO05D004963 3.1e-26 122.9 120 48.3
Lj2g0019349 Lotus japonicus HOM05D004214 ORTHO05D004963 4.1e-26 122.5 144 36.8
MD09G1055400 Malus domestica HOM05D004214 ORTHO05D004963 4.1e-26 122.5 135 43.7
FAN09G1794 Fragaria x ananassa HOM05D004214 ORTHO05D004963 9.1e-26 121.3 181 38.7
PGR083G1063 Punica granatum HOM05D004214 ORTHO05D004963 9.1e-26 121.3 190 35.3
FvH4_6g48001 Fragaria vesca HOM05D004214 ORTHO05D004963 1.5e-25 120.6 145 41.4
FAN14G3700 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.5e-25 120.6 145 41.4
C04p45950 Brassica napus HOM05D004214 ORTHO05D004963 3.8e-24 115.9 163 39.3
CsaV3_5G038250 Cucumis sativus L. HOM05D004214 ORTHO05D004963 5.0e-24 115.5 147 39.5
Phvul.004G029700 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 5.0e-24 115.5 205 27.8
FvH4_6g48000 Fragaria vesca HOM05D004214 ORTHO05D004963 1.1e-23 114.4 142 42.3
Mapoly0033s0115 Marchantia polymorpha HOM05D004214 ORTHO05D004963 1.1e-23 114.4 149 34.2
TPR.G8805 Trifolium pratense HOM05D004214 ORTHO05D004963 2.5e-23 113.2 147 38.1
RcHm_v2.0_Chr2g0167251 Rosa chinensis HOM05D004214 ORTHO05D004963 4.2e-23 112.5 175 37.7
FAN02G2928 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.6e-22 110.5 174 35.6
Psat1g071840 Pisum sativum HOM05D004214 ORTHO05D004963 2.7e-22 109.8 146 34.9
MELO3C033594.2 Cucumis melo HOM05D004214 ORTHO05D004963 4.7e-22 109.0 145 37.2
Ca_04848_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 1.0e-21 107.8 143 37.1
RcHm_v2.0_Chr2g0167241 Rosa chinensis HOM05D004214 ORTHO05D004963 3.9e-21 105.9 140 39.3
Zm00001eb328430 Zea mays HOM05D004214 ORTHO05D004963 5.2e-21 105.5 176 36.4
ClCG10G015310 Citrullus lanatus HOM05D004214 ORTHO05D004963 1.3e-19 100.9 193 31.1
Nitab4.5_0001591g0160 Nicotiana tabacum HOM05D004214 ORTHO05D004963 2.2e-19 100.1 191 30.9
Lj2g0001860 Lotus japonicus HOM05D004214 ORTHO05D004963 3.7e-19 99.4 91 49.5
Os07g0633000 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 1.7e-16 90.5 164 34.8
arahy.Tifrunner.gnm1.ann1.SU00NT Arachis hypogaea HOM05D004214 ORTHO05D004963 5.0e-16 89.0 173 28.9
C06p18570 Brassica napus HOM05D004214 ORTHO05D004963 6.1e-14 82.0 83 53.0
CBR_g51334 Chara braunii HOM05D004214 ORTHO05D004963 4.4e-12 75.9 172 29.7
Gohir.A07G206700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 2.8e-11 73.2 98 41.8
BraA07t29702Z Brassica rapa HOM05D004214 ORTHO05D004963 1.8e-10 70.5 74 52.7
CBR_g46605 Chara braunii HOM05D004214 ORTHO05D004963 4.1e-10 69.3 121 33.1
BolC6t37070H Brassica oleracea HOM05D004214 ORTHO05D004963 1.9e-07 60.5 65 49.2
BolC4t26178H Brassica oleracea HOM05D004214 ORTHO05D004963 3.2e-07 59.7 59 52.5
Glyma.13G061800 Glycine max HOM05D004214 ORTHO05D004963 2.7e-06 56.6 51 43.1


User provided reference genes

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