Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A364T22 Lonicera japonica HOM05D004214 ORTHO05D004963 3.9e-82 308.1 164 100.0
Lj3A367T10 Lonicera japonica HOM05D004214 ORTHO05D004963 1.6e-51 206.5 206 57.8
Lj8A428G27 Lonicera japonica HOM05D004214 ORTHO05D004963 2.9e-32 142.5 141 57.4
Lj3A346G23 Lonicera japonica HOM05D004214 ORTHO05D004963 1.2e-30 137.1 170 50.0
Lj3A369T15 Lonicera japonica HOM05D004214 ORTHO05D004963 1.1e-28 130.6 75 82.7
Lj8A426T27 Lonicera japonica HOM05D004214 ORTHO05D004963 2.5e-28 129.4 75 81.3
Lj3A352G14 Lonicera japonica HOM05D004214 ORTHO05D004963 6.2e-27 124.8 75 78.7
Lj4P113T24 Lonicera japonica HOM05D004214 ORTHO05D004963 2.3e-26 122.9 73 80.8
Lj3A350G16 Lonicera japonica HOM05D004214 ORTHO05D004963 7.1e-23 111.3 95 64.2
MSTRG.23916 Avicennia marina HOM05D004214 ORTHO05D004963 1.1e-18 97.4 75 65.3
Dinv11505 Davidia involucrata HOM05D004214 ORTHO05D004963 4.0e-18 95.5 67 65.7
Solyc02g067120.4 Solanum lycopersicum HOM05D004214 ORTHO05D004963 4.0e-18 95.5 77 58.4
Sopen02g016310 Solanum pennellii HOM05D004214 ORTHO05D004963 4.0e-18 95.5 77 58.4
SGA_v2.0_scaffold413G51175 Striga asiatica HOM05D004214 ORTHO05D004963 8.9e-18 94.4 74 59.5
BcaB06g27341 Brassica carinata HOM05D004214 ORTHO05D004963 1.2e-17 94.0 74 58.1
Migut.H00677 Erythranthe guttata HOM05D004214 ORTHO05D004963 1.2e-17 94.0 67 67.2
Actinidia06102 Actinidia chinensis HOM05D004214 ORTHO05D004963 4.4e-17 92.0 74 56.8
CAN.G979.5 Capsicum annuum HOM05D004214 ORTHO05D004963 4.4e-17 92.0 76 56.6
Oeu010226.1 Olea europaea HOM05D004214 ORTHO05D004963 7.6e-17 91.3 75 56.0
Oeu010227.1 Olea europaea HOM05D004214 ORTHO05D004963 7.6e-17 91.3 75 56.0
PGSC0003DMG400025136 Solanum tuberosum HOM05D004214 ORTHO05D004963 7.6e-17 91.3 75 57.3
TWI60G1366 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 1.3e-16 90.5 67 58.2
C04p45970 Brassica napus HOM05D004214 ORTHO05D004963 1.7e-16 90.1 74 55.4
BolC4t26180H Brassica oleracea HOM05D004214 ORTHO05D004963 1.7e-16 90.1 74 55.4
A04p12290 Brassica napus HOM05D004214 ORTHO05D004963 2.2e-16 89.7 74 55.4
BraA04t16893Z Brassica rapa HOM05D004214 ORTHO05D004963 2.2e-16 89.7 74 55.4
Cc07_g03630 Coffea canephora HOM05D004214 ORTHO05D004963 2.9e-16 89.4 74 56.8
Eucgr.I02016 Eucalyptus grandis HOM05D004214 ORTHO05D004963 2.9e-16 89.4 75 54.7
GSVIVG01011460001 Vitis vinifera HOM05D004214 ORTHO05D004963 2.9e-16 89.4 67 62.7
Thhalv10027904m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 4.9e-16 88.6 74 54.1
TWI34G0797 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 6.4e-16 88.2 78 53.8
TWI34G1333 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 6.4e-16 88.2 78 53.8
AT5G39530 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 8.4e-16 87.8 75 53.3
Hma1.2p1_0409F.1_g146710 Hydrangea macrophylla HOM05D004214 ORTHO05D004963 8.4e-16 87.8 74 54.1
AL7G50770 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 1.1e-15 87.4 74 54.1
Sp7g02430 Schrenkiella parvula HOM05D004214 ORTHO05D004963 1.1e-15 87.4 74 52.7
CARHR262760 Cardamine hirsuta HOM05D004214 ORTHO05D004963 1.4e-15 87.0 74 52.7
Atru.chr8.322 Acer truncatum HOM05D004214 ORTHO05D004963 1.9e-15 86.7 74 55.4
CSS0015906 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.9e-15 86.7 74 55.4
CSS0019671 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.9e-15 86.7 74 55.4
Carub.0007s3642 Capsella rubella HOM05D004214 ORTHO05D004963 1.9e-15 86.7 74 52.7
Cpa.g.sc14.113 Carica papaya HOM05D004214 ORTHO05D004963 1.9e-15 86.7 74 51.4
Sc10g0003430 Simmondsia chinensis HOM05D004214 ORTHO05D004963 3.2e-15 85.9 75 52.0
Potri.017G087500 Populus trichocarpa HOM05D004214 ORTHO05D004963 4.2e-15 85.5 74 54.1
EL10Ac2g03019 Beta vulgaris HOM05D004214 ORTHO05D004963 5.4e-15 85.1 77 51.9
BraA04t16892Z Brassica rapa HOM05D004214 ORTHO05D004963 7.1e-15 84.7 74 50.0
HanXRQChr15g0487741 Helianthus annuus HOM05D004214 ORTHO05D004963 7.1e-15 84.7 67 58.2
Lsat_1_v5_gn_4_169740 Lactuca sativa HOM05D004214 ORTHO05D004963 7.1e-15 84.7 67 56.7
Sp7g02440 Schrenkiella parvula HOM05D004214 ORTHO05D004963 7.1e-15 84.7 75 49.3
TAR629G3302 Trochodendron aralioides HOM05D004214 ORTHO05D004963 7.1e-15 84.7 86 50.0
AL7G50790 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 9.2e-15 84.3 78 46.2
BcaB06g27320 Brassica carinata HOM05D004214 ORTHO05D004963 9.2e-15 84.3 74 50.0
BcaB06g27340 Brassica carinata HOM05D004214 ORTHO05D004963 9.2e-15 84.3 74 50.0
C04p45950 Brassica napus HOM05D004214 ORTHO05D004963 9.2e-15 84.3 120 37.5
SalBow1G5883 Salvia bowleyana HOM05D004214 ORTHO05D004963 9.2e-15 84.3 67 62.7
C04p45960 Brassica napus HOM05D004214 ORTHO05D004963 1.2e-14 84.0 74 50.0
BolC4t26179H Brassica oleracea HOM05D004214 ORTHO05D004963 1.2e-14 84.0 74 50.0
CARHR262800 Cardamine hirsuta HOM05D004214 ORTHO05D004963 1.6e-14 83.6 74 51.4
unitig_62.g23442 Utricularia gibba HOM05D004214 ORTHO05D004963 1.6e-14 83.6 75 54.7
ECA232G2753 Erigeron canadensis HOM05D004214 ORTHO05D005214 2.1e-14 83.2 67 56.7
CARHR262810 Cardamine hirsuta HOM05D004214 ORTHO05D004963 2.7e-14 82.8 78 46.2
THA.LOC104805483 Tarenaya hassleriana HOM05D004214 ORTHO05D004963 2.7e-14 82.8 79 48.1
Thhalv10028063m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 3.5e-14 82.4 84 46.4
Carub.0007s3643 Capsella rubella HOM05D004214 ORTHO05D004963 4.6e-14 82.0 74 47.3
Ciclev10012515m.g Citrus clementina HOM05D004214 ORTHO05D004963 4.6e-14 82.0 74 51.4
A04p12270 Brassica napus HOM05D004214 ORTHO05D004963 6.0e-14 81.6 74 48.6
BraA04t16891Z Brassica rapa HOM05D004214 ORTHO05D004963 6.0e-14 81.6 74 48.6
AT5G39520 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 1.0e-13 80.9 74 45.9
A04p12280 Brassica napus HOM05D004214 ORTHO05D004963 1.3e-13 80.5 74 48.6
Rhsim10G0035900 Rhododendron simsii HOM05D004214 ORTHO05D004963 3.0e-13 79.3 74 48.6
Manes.02G048700 Manihot esculenta HOM05D004214 ORTHO05D004963 3.9e-13 79.0 74 52.7
CDE02G0918 Ceratophyllum demersum HOM05D004214 ORTHO05D004963 5.1e-13 78.6 74 45.9
CSS0036969 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 6.6e-13 78.2 74 51.4
Nitab4.5_0000212g0090 Nicotiana tabacum HOM05D004214 ORTHO05D004963 6.6e-13 78.2 79 46.8
Nitab4.5_0010283g0010 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.1e-12 77.4 79 45.6
Rhsim10G0035800 Rhododendron simsii HOM05D004214 ORTHO05D004963 5.6e-12 75.1 74 51.4
Thecc.04G087300 Theobroma cacao HOM05D004214 ORTHO05D004963 9.6e-12 74.3 78 42.3
Duzib147G0992 Durio zibethinus HOM05D004214 ORTHO05D004963 2.1e-11 73.2 66 48.5
Hund15587 Selenicereus undatus HOM05D004214 ORTHO05D004963 4.7e-11 72.0 60 56.7
ATR0564G445 Amborella trichopoda HOM05D004214 ORTHO05D004963 6.2e-11 71.6 77 48.1
Nitab4.5_0000568g0170 Nicotiana tabacum HOM05D004214 ORTHO05D004963 6.2e-11 71.6 94 39.4
AUR62018111 Chenopodium quinoa HOM05D004214 ORTHO05D004963 8.1e-11 71.2 69 49.3
AUR62034445 Chenopodium quinoa HOM05D004214 ORTHO05D004963 8.1e-11 71.2 69 49.3
Nitab4.5_0001591g0160 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.1e-10 70.9 95 34.7
DCAR_011079 Daucus carota HOM05D004214 ORTHO05D004963 1.4e-10 70.5 84 48.8
Peaxi162Scf00629g00121 Petunia axillaris HOM05D004214 ORTHO05D004963 1.4e-10 70.5 74 45.9
BcaB06g27319 Brassica carinata HOM05D004214 ORTHO05D004963 1.8e-10 70.1 67 46.3
COL.COLO4_12225 Corchorus olitorius HOM05D004214 ORTHO05D004963 1.8e-10 70.1 74 45.9
SEGI_32476 Sequoiadendron giganteum HOM05D004214 ORTHO05D004963 1.8e-10 70.1 66 48.5
Gohir.D07G212700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 5.2e-10 68.6 74 44.6
Gorai.001G240700 Gossypium raimondii HOM05D004214 ORTHO05D004963 5.2e-10 68.6 74 44.6
CAN.G206.176 Capsicum annuum HOM05D004214 ORTHO05D004963 2.0e-09 66.6 71 42.3
PSO017G4463 Papaver somniferum HOM05D004214 ORTHO05D004963 2.6e-09 66.2 65 47.7
PSO478G0939 Papaver somniferum HOM05D004214 ORTHO05D004963 2.6e-09 66.2 65 47.7
BraA07t29702Z Brassica rapa HOM05D004214 ORTHO05D004963 4.4e-09 65.5 60 50.0
RcHm_v2.0_Chr2g0167251 Rosa chinensis HOM05D004214 ORTHO05D004963 5.8e-09 65.1 79 43.0
PGR083G1063 Punica granatum HOM05D004214 ORTHO05D004963 1.3e-08 63.9 64 43.8
FAN14G4990 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.7e-08 63.5 72 43.1
Ca_04853_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 3.8e-08 62.4 76 38.2
PGSC0003DMG401001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 3.8e-08 62.4 72 41.7
C06p18570 Brassica napus HOM05D004214 ORTHO05D004963 4.9e-08 62.0 60 46.7
TPR.G26214 Trifolium pratense HOM05D004214 ORTHO05D004963 4.9e-08 62.0 82 35.4
FAN05G5298 Fragaria x ananassa HOM05D004214 ORTHO05D004963 6.4e-08 61.6 72 41.7
Zm00001eb328430 Zea mays HOM05D004214 ORTHO05D004963 6.4e-08 61.6 71 46.5
RcHm_v2.0_Chr2g0167291 Rosa chinensis HOM05D004214 ORTHO05D004963 8.4e-08 61.2 75 40.0
Solyc02g088270.3 Solanum lycopersicum HOM05D004214 ORTHO05D004963 8.4e-08 61.2 71 40.8
QL02p084854 Quercus lobata HOM05D004214 ORTHO05D004963 1.1e-07 60.8 82 41.5
TPR.G14395 Trifolium pratense HOM05D004214 ORTHO05D004963 1.4e-07 60.5 78 32.1
BolC6t37070H Brassica oleracea HOM05D004214 ORTHO05D004963 1.9e-07 60.1 44 56.8
Peaxi162Scf00166g01050 Petunia axillaris HOM05D004214 ORTHO05D004963 1.9e-07 60.1 58 43.1
Psat1g070480 Pisum sativum HOM05D004214 ORTHO05D004963 1.9e-07 60.1 69 39.1
PGSC0003DMG402001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 1.9e-07 60.1 112 33.9
Lj2g0016815 Lotus japonicus HOM05D004214 ORTHO05D004963 2.4e-07 59.7 72 38.9
QL02p084825 Quercus lobata HOM05D004214 ORTHO05D004963 2.4e-07 59.7 74 43.2
Sopen02g032950 Solanum pennellii HOM05D004214 ORTHO05D004963 4.2e-07 58.9 92 35.9
MD09G1055000 Malus domestica HOM05D004214 ORTHO05D004963 7.1e-07 58.2 74 35.1
Medtr6g012830 Medicago truncatula HOM05D004214 ORTHO05D004963 7.1e-07 58.2 80 35.0
Prupe.3G263500 Prunus persica HOM05D004214 ORTHO05D004963 7.1e-07 58.2 93 32.3
QL02p084872 Quercus lobata HOM05D004214 ORTHO05D004963 2.1e-06 56.6 74 33.8
Lalb_Chr06g0175181 Lupinus albus HOM05D004214 ORTHO05D004963 2.7e-06 56.2 66 37.9
CsaV3_5G038250 Cucumis sativus L. HOM05D004214 ORTHO05D004963 3.5e-06 55.8 69 39.1
RcHm_v2.0_Chr2g0167241 Rosa chinensis HOM05D004214 ORTHO05D004963 4.6e-06 55.5 71 38.0
FAN09G1794 Fragaria x ananassa HOM05D004214 ORTHO05D004963 7.8e-06 54.7 72 37.5
PGR004G0346 Punica granatum HOM05D004214 ORTHO05D004963 7.8e-06 54.7 50 52.0


User provided reference genes

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