Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A350G16 Lonicera japonica HOM05D004214 ORTHO05D004963 2.4e-81 305.4 152 100.0
Lj3A367T10 Lonicera japonica HOM05D004214 ORTHO05D004963 1.5e-67 259.6 218 66.5
Lj8A428G27 Lonicera japonica HOM05D004214 ORTHO05D004963 8.2e-42 174.1 176 58.5
Lj3A346G23 Lonicera japonica HOM05D004214 ORTHO05D004963 3.6e-37 158.7 205 50.2
Lj3A369T15 Lonicera japonica HOM05D004214 ORTHO05D004963 2.0e-32 142.9 154 54.5
Lj8A426T27 Lonicera japonica HOM05D004214 ORTHO05D004963 8.5e-31 137.5 154 53.2
Lj3A352G14 Lonicera japonica HOM05D004214 ORTHO05D004963 5.4e-25 118.2 146 51.4
Lj4P113T24 Lonicera japonica HOM05D004214 ORTHO05D004963 7.7e-24 114.4 146 47.9
Lj3A364T22 Lonicera japonica HOM05D004214 ORTHO05D004963 6.5e-23 111.3 95 64.2
Nitab4.5_0000212g0090 Nicotiana tabacum HOM05D004214 ORTHO05D004963 5.5e-22 108.2 160 40.0
Peaxi162Scf00629g00121 Petunia axillaris HOM05D004214 ORTHO05D004963 1.4e-20 103.6 164 39.6
Hma1.2p1_0409F.1_g146710 Hydrangea macrophylla HOM05D004214 ORTHO05D004963 1.5e-19 100.1 256 33.2
Oeu010226.1 Olea europaea HOM05D004214 ORTHO05D004963 4.4e-19 98.6 197 33.5
Oeu010227.1 Olea europaea HOM05D004214 ORTHO05D004963 4.4e-19 98.6 197 33.5
MSTRG.23916 Avicennia marina HOM05D004214 ORTHO05D004963 7.5e-19 97.8 195 34.9
TAR629G3302 Trochodendron aralioides HOM05D004214 ORTHO05D004963 3.7e-18 95.5 204 33.8
GSVIVG01011460001 Vitis vinifera HOM05D004214 ORTHO05D004963 6.3e-18 94.7 192 34.9
Sc10g0003430 Simmondsia chinensis HOM05D004214 ORTHO05D004963 8.3e-18 94.4 193 33.2
Actinidia06102 Actinidia chinensis HOM05D004214 ORTHO05D004963 1.1e-17 94.0 230 30.9
Lsat_1_v5_gn_4_169740 Lactuca sativa HOM05D004214 ORTHO05D004963 1.1e-17 94.0 159 37.7
Cpa.g.sc14.113 Carica papaya HOM05D004214 ORTHO05D004963 1.4e-17 93.6 198 34.8
Eucgr.I02016 Eucalyptus grandis HOM05D004214 ORTHO05D004963 1.4e-17 93.6 193 35.2
CSS0036969 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.8e-17 93.2 204 35.3
Dinv11505 Davidia involucrata HOM05D004214 ORTHO05D004963 3.1e-17 92.4 194 36.1
SalBow1G5883 Salvia bowleyana HOM05D004214 ORTHO05D004963 3.1e-17 92.4 197 32.5
CSS0015906 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 4.1e-17 92.0 192 34.4
CSS0019671 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 4.1e-17 92.0 192 34.4
Nitab4.5_0010283g0010 Nicotiana tabacum HOM05D004214 ORTHO05D004963 4.1e-17 92.0 189 34.4
Migut.H00677 Erythranthe guttata HOM05D004214 ORTHO05D004963 7.0e-17 91.3 201 33.8
HanXRQChr15g0487741 Helianthus annuus HOM05D004214 ORTHO05D004963 7.0e-17 91.3 159 35.8
Cc07_g03630 Coffea canephora HOM05D004214 ORTHO05D004963 9.2e-17 90.9 232 31.0
EL10Ac2g03019 Beta vulgaris HOM05D004214 ORTHO05D004963 1.2e-16 90.5 192 32.8
ECA232G2753 Erigeron canadensis HOM05D004214 ORTHO05D005214 3.5e-16 89.0 158 36.1
TWI60G1366 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 4.5e-16 88.6 201 32.3
Ciclev10012515m.g Citrus clementina HOM05D004214 ORTHO05D004963 7.8e-16 87.8 146 41.8
Manes.02G048700 Manihot esculenta HOM05D004214 ORTHO05D004963 7.8e-16 87.8 206 32.5
PGR004G0346 Punica granatum HOM05D004214 ORTHO05D004963 1.0e-15 87.4 138 43.5
unitig_62.g23442 Utricularia gibba HOM05D004214 ORTHO05D004963 1.7e-15 86.7 216 31.5
CAN.G979.5 Capsicum annuum HOM05D004214 ORTHO05D004963 2.9e-15 85.9 148 39.9
QL02p084872 Quercus lobata HOM05D004214 ORTHO05D004963 5.0e-15 85.1 100 45.0
CARHR262760 Cardamine hirsuta HOM05D004214 ORTHO05D004963 6.6e-15 84.7 198 31.3
AUR62034445 Chenopodium quinoa HOM05D004214 ORTHO05D004963 8.6e-15 84.3 103 46.6
Atru.chr8.322 Acer truncatum HOM05D004214 ORTHO05D004963 1.1e-14 84.0 202 31.7
AL7G50770 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 1.1e-14 84.0 235 30.2
Sp7g02440 Schrenkiella parvula HOM05D004214 ORTHO05D004963 1.1e-14 84.0 100 50.0
Carub.0007s3642 Capsella rubella HOM05D004214 ORTHO05D004963 1.5e-14 83.6 197 32.5
QL02p084854 Quercus lobata HOM05D004214 ORTHO05D004963 1.9e-14 83.2 119 38.7
Sp7g02430 Schrenkiella parvula HOM05D004214 ORTHO05D004963 1.9e-14 83.2 197 32.5
Solyc02g067120.4 Solanum lycopersicum HOM05D004214 ORTHO05D004963 2.5e-14 82.8 209 29.7
PGSC0003DMG400025136 Solanum tuberosum HOM05D004214 ORTHO05D004963 2.5e-14 82.8 242 27.7
C04p45970 Brassica napus HOM05D004214 ORTHO05D004963 3.3e-14 82.4 141 39.0
BolC4t26180H Brassica oleracea HOM05D004214 ORTHO05D004963 3.3e-14 82.4 141 39.0
Carub.0007s3643 Capsella rubella HOM05D004214 ORTHO05D004963 3.3e-14 82.4 178 35.4
Thhalv10028063m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 3.3e-14 82.4 88 48.9
Sopen02g016310 Solanum pennellii HOM05D004214 ORTHO05D004963 3.3e-14 82.4 143 35.7
Thhalv10027904m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 4.3e-14 82.0 141 39.0
Hund15587 Selenicereus undatus HOM05D004214 ORTHO05D004963 4.3e-14 82.0 192 31.2
THA.LOC104805483 Tarenaya hassleriana HOM05D004214 ORTHO05D004963 4.3e-14 82.0 194 31.4
AT5G39530 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 5.6e-14 81.6 177 35.6
A04p12290 Brassica napus HOM05D004214 ORTHO05D004963 5.6e-14 81.6 197 32.0
BraA04t16893Z Brassica rapa HOM05D004214 ORTHO05D004963 5.6e-14 81.6 197 32.0
CDE02G0918 Ceratophyllum demersum HOM05D004214 ORTHO05D004963 5.6e-14 81.6 107 43.9
BcaB06g27341 Brassica carinata HOM05D004214 ORTHO05D004963 7.3e-14 81.3 141 38.3
PSO478G0939 Papaver somniferum HOM05D004214 ORTHO05D004963 7.3e-14 81.3 99 49.5
Glyma.13G061800 Glycine max HOM05D004214 ORTHO05D004963 9.5e-14 80.9 80 43.8
Rhsim10G0035900 Rhododendron simsii HOM05D004214 ORTHO05D004963 9.5e-14 80.9 211 29.9
CARHR262800 Cardamine hirsuta HOM05D004214 ORTHO05D004963 1.2e-13 80.5 158 34.2
A04p12270 Brassica napus HOM05D004214 ORTHO05D004963 1.6e-13 80.1 88 48.9
BraA04t16891Z Brassica rapa HOM05D004214 ORTHO05D004963 1.6e-13 80.1 88 48.9
AUR62018111 Chenopodium quinoa HOM05D004214 ORTHO05D004963 1.6e-13 80.1 103 44.7
DCAR_011079 Daucus carota HOM05D004214 ORTHO05D004963 1.6e-13 80.1 243 30.0
Nn4g23269 Nelumbo nucifera HOM05D004214 ORTHO05D004963 1.6e-13 80.1 98 45.9
BcaB06g27340 Brassica carinata HOM05D004214 ORTHO05D004963 2.1e-13 79.7 88 50.0
CARHR262810 Cardamine hirsuta HOM05D004214 ORTHO05D004963 2.1e-13 79.7 103 44.7
QL02p084825 Quercus lobata HOM05D004214 ORTHO05D004963 2.1e-13 79.7 207 27.5
PGSC0003DMG401001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 2.1e-13 79.7 77 54.5
COL.COLO4_12225 Corchorus olitorius HOM05D004214 ORTHO05D004963 3.6e-13 79.0 155 32.3
PSO017G4463 Papaver somniferum HOM05D004214 ORTHO05D004963 3.6e-13 79.0 99 48.5
Potri.017G087500 Populus trichocarpa HOM05D004214 ORTHO05D004963 3.6e-13 79.0 203 30.5
PGSC0003DMG402001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 4.7e-13 78.6 77 53.2
TWI34G0797 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 6.1e-13 78.2 201 30.3
TWI34G1333 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 6.1e-13 78.2 201 30.3
Rhsim10G0035800 Rhododendron simsii HOM05D004214 ORTHO05D004963 8.0e-13 77.8 199 29.6
AT5G39520 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 1.0e-12 77.4 104 44.2
Duzib147G0992 Durio zibethinus HOM05D004214 ORTHO05D004963 1.4e-12 77.0 197 28.9
C04p45960 Brassica napus HOM05D004214 ORTHO05D004963 1.8e-12 76.6 101 46.5
BolC4t26179H Brassica oleracea HOM05D004214 ORTHO05D004963 1.8e-12 76.6 101 46.5
Thecc.04G087300 Theobroma cacao HOM05D004214 ORTHO05D004963 1.8e-12 76.6 200 27.5
BcaB06g27320 Brassica carinata HOM05D004214 ORTHO05D004963 2.3e-12 76.3 88 48.9
Solyc02g088270.3 Solanum lycopersicum HOM05D004214 ORTHO05D004963 2.3e-12 76.3 77 51.9
CAN.G206.176 Capsicum annuum HOM05D004214 ORTHO05D004963 3.0e-12 75.9 77 53.2
MD09G1055400 Malus domestica HOM05D004214 ORTHO05D004963 3.0e-12 75.9 76 48.7
AL7G50790 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 4.0e-12 75.5 103 41.7
Gohir.D07G212700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 4.0e-12 75.5 97 43.3
Gorai.001G240700 Gossypium raimondii HOM05D004214 ORTHO05D004963 4.0e-12 75.5 97 43.3
BraA04t16892Z Brassica rapa HOM05D004214 ORTHO05D004963 6.8e-12 74.7 88 47.7
Sopen02g032950 Solanum pennellii HOM05D004214 ORTHO05D004963 6.8e-12 74.7 77 51.9
A04p12280 Brassica napus HOM05D004214 ORTHO05D004963 1.2e-11 73.9 73 53.4
Nitab4.5_0000568g0170 Nicotiana tabacum HOM05D004214 ORTHO05D004963 3.4e-11 72.4 119 37.8
ATR0564G445 Amborella trichopoda HOM05D004214 ORTHO05D004963 5.7e-11 71.6 138 37.0
Gohir.A07G206700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 2.2e-10 69.7 61 54.1
arahy.Tifrunner.gnm1.ann1.SU00NT Arachis hypogaea HOM05D004214 ORTHO05D004963 4.9e-10 68.6 117 31.6
arahy.Tifrunner.gnm1.ann1.55PBKN Arachis hypogaea HOM05D004214 ORTHO05D004963 8.3e-10 67.8 142 28.9
MD09G1055000 Malus domestica HOM05D004214 ORTHO05D004963 8.3e-10 67.8 62 50.0
Psat1g070480 Pisum sativum HOM05D004214 ORTHO05D004963 1.8e-09 66.6 51 58.8
arahy.Tifrunner.gnm1.ann1.7SZ544 Arachis hypogaea HOM05D004214 ORTHO05D004963 2.4e-09 66.2 152 28.3
Ca_04853_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 7.0e-09 64.7 51 54.9
TPR.G14395 Trifolium pratense HOM05D004214 ORTHO05D004963 9.2e-09 64.3 51 52.9
Phvul.004G031400 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 1.6e-08 63.5 48 56.2
VMungo0464G0566 Vigna mungo HOM05D004214 ORTHO05D004963 2.7e-08 62.8 48 56.2
Lj2g0002943 Lotus japonicus HOM05D004214 ORTHO05D004963 3.5e-08 62.4 102 39.2
Peaxi162Scf00166g01050 Petunia axillaris HOM05D004214 ORTHO05D004963 5.9e-08 61.6 144 27.1
Lj2g0016815 Lotus japonicus HOM05D004214 ORTHO05D004963 7.8e-08 61.2 61 47.5
FAN14G4990 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.0e-07 60.8 100 38.0
FAN02G2928 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.3e-07 60.5 55 49.1
TPR.G26214 Trifolium pratense HOM05D004214 ORTHO05D004963 1.3e-07 60.5 61 42.6
BolC4t26178H Brassica oleracea HOM05D004214 ORTHO05D004963 1.7e-07 60.1 43 62.8
Glyma.13G060852 Glycine max HOM05D004214 ORTHO05D004963 1.7e-07 60.1 69 43.5
FvH4_6g48000 Fragaria vesca HOM05D004214 ORTHO05D004963 2.3e-07 59.7 94 40.4
Medtr6g012830 Medicago truncatula HOM05D004214 ORTHO05D004963 2.3e-07 59.7 48 54.2
Lj2g0001860 Lotus japonicus HOM05D004214 ORTHO05D004963 3.0e-07 59.3 62 45.2
Glyma.19G025600 Glycine max HOM05D004214 ORTHO05D004963 3.9e-07 58.9 69 42.0
ClCG09G017980 Citrullus lanatus HOM05D004214 ORTHO05D004963 5.0e-07 58.5 66 45.5
Prupe.3G263500 Prunus persica HOM05D004214 ORTHO05D004963 5.0e-07 58.5 68 45.6
BcaB06g27319 Brassica carinata HOM05D004214 ORTHO05D004963 8.6e-07 57.8 41 63.4
FAN09G1794 Fragaria x ananassa HOM05D004214 ORTHO05D004963 8.6e-07 57.8 53 50.9
SEGI_32476 Sequoiadendron giganteum HOM05D004214 ORTHO05D004963 8.6e-07 57.8 62 45.2
Lalb_Chr06g0175181 Lupinus albus HOM05D004214 ORTHO05D004963 1.1e-06 57.4 51 45.1
Ca_04848_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 1.5e-06 57.0 50 48.0
SGA_v2.0_scaffold413G51175 Striga asiatica HOM05D004214 ORTHO05D004963 1.9e-06 56.6 143 35.7
Zm00001eb402430 Zea mays HOM05D004214 ORTHO05D004963 1.9e-06 56.6 50 46.0
FAN05G5298 Fragaria x ananassa HOM05D004214 ORTHO05D004963 2.5e-06 56.2 93 36.6
FvH4_6g48001 Fragaria vesca HOM05D004214 ORTHO05D004963 3.3e-06 55.8 50 50.0
FAN14G3700 Fragaria x ananassa HOM05D004214 ORTHO05D004963 3.3e-06 55.8 50 50.0
RcHm_v2.0_Chr2g0167291 Rosa chinensis HOM05D004214 ORTHO05D004963 3.3e-06 55.8 90 38.9
Os03g0168300 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 4.3e-06 55.5 71 36.6
RcHm_v2.0_Chr2g0167251 Rosa chinensis HOM05D004214 ORTHO05D004963 9.5e-06 54.3 50 50.0


User provided reference genes

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