Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A347G4 Lonicera japonica HOM05D000324 ORTHO05D004875 2.2e-45 185.3 92 100.0
Lj3C353G5 Lonicera japonica HOM05D000324 ORTHO05D004875 5.7e-38 160.6 116 75.0
Lj3A361T14 Lonicera japonica HOM05D000324 ORTHO05D004875 1.6e-32 142.5 109 71.6
Dinv18404 Davidia involucrata HOM05D000324 ORTHO05D004875 8.8e-31 136.7 116 62.9
Eucgr.H02649 Eucalyptus grandis HOM05D000324 ORTHO05D004875 2.0e-30 135.6 115 60.9
Manes.01G056450 Manihot esculenta HOM05D000324 ORTHO05D004875 2.0e-30 135.6 116 62.9
Manes.05G201400 Manihot esculenta HOM05D000324 ORTHO05D004875 3.3e-30 134.8 116 62.1
Cfa008641 Carpinus fangiana HOM05D000324 ORTHO05D004875 7.5e-30 133.7 115 61.7
Prupe.1G167500 Prunus persica HOM05D000324 ORTHO05D004875 9.7e-30 133.3 116 60.3
Ciclev10004427m.g Citrus clementina HOM05D000324 ORTHO05D004875 1.3e-29 132.9 116 62.9
Rhsim09G0031500 Rhododendron simsii HOM05D000324 ORTHO05D004875 1.3e-29 132.9 115 62.6
CSS0006110 Camellia sinensis var. sinensis HOM05D000324 ORTHO05D004875 1.7e-29 132.5 116 61.2
Cc03_g09380 Coffea canephora HOM05D000324 ORTHO05D004875 2.2e-29 132.1 116 60.3
FAN07G0429 Fragaria x ananassa HOM05D000324 ORTHO05D004875 2.8e-29 131.7 116 61.2
FAN12G1738 Fragaria x ananassa HOM05D000324 ORTHO05D004875 2.8e-29 131.7 116 62.1
GSVIVG01022434001 Vitis vinifera HOM05D000324 ORTHO05D004875 2.8e-29 131.7 69 89.9
Cpa.g.sc157.34 Carica papaya HOM05D000324 ORTHO05D004875 3.7e-29 131.3 116 60.3
HanXRQChr01g0022111 Helianthus annuus HOM05D000324 ORTHO05D004875 4.8e-29 131.0 116 62.9
Nitab4.5_0000037g0030 Nicotiana tabacum HOM05D000324 ORTHO05D004875 4.8e-29 131.0 116 61.2
TWI09G0239 Tripterygium wilfordii HOM05D000324 ORTHO05D004875 4.8e-29 131.0 116 57.8
BcaC01g03365 Brassica carinata HOM05D000324 ORTHO05D004875 6.3e-29 130.6 117 59.8
C03p53280 Brassica napus HOM05D000324 ORTHO05D004875 6.3e-29 130.6 117 59.8
BolC3t17589H Brassica oleracea HOM05D000324 ORTHO05D004875 6.3e-29 130.6 117 59.8
Sp3g21490 Schrenkiella parvula HOM05D000324 ORTHO05D004875 6.3e-29 130.6 117 59.8
CAN.G1155.12 Capsicum annuum HOM05D000324 ORTHO05D004875 8.2e-29 130.2 116 59.5
CiPaw.01G115100 Carya illinoinensis HOM05D000324 ORTHO05D004875 8.2e-29 130.2 115 60.9
FvH4_4g13140 Fragaria vesca HOM05D000324 ORTHO05D004875 1.1e-28 129.8 116 60.3
FAN12G0788 Fragaria x ananassa HOM05D000324 ORTHO05D004875 1.1e-28 129.8 116 60.3
Aa31LG8G10350 Aethionema arabicum HOM05D000324 ORTHO05D004875 1.4e-28 129.4 118 60.2
BcaB03g14616 Brassica carinata HOM05D000324 ORTHO05D004875 1.4e-28 129.4 117 59.0
BraA03t13473Z Brassica rapa HOM05D000324 ORTHO05D004875 1.4e-28 129.4 117 59.0
Sc13g0000480 Simmondsia chinensis HOM05D000324 ORTHO05D004875 1.4e-28 129.4 115 58.3
arahy.Tifrunner.gnm1.ann1.II2GNC Arachis hypogaea HOM05D000324 ORTHO05D004875 1.8e-28 129.0 114 59.6
Carub.0007s2836 Capsella rubella HOM05D000324 ORTHO05D004875 1.8e-28 129.0 106 61.3
Haze_11666 Corylus avellana HOM05D000001 ORTHO05D004875 1.8e-28 129.0 115 60.9
Thhalv10002419m.g Eutrema salsugineum HOM05D000324 ORTHO05D004875 1.8e-28 129.0 117 59.0
Thhalv10024478m.g Eutrema salsugineum HOM05D000324 ORTHO05D004875 1.8e-28 129.0 109 63.3
Gorai.009G349600 Gossypium raimondii HOM05D000324 ORTHO05D004875 1.8e-28 129.0 116 58.6
AT4G14070 Arabidopsis thaliana HOM05D000324 ORTHO05D004875 2.4e-28 128.6 106 63.2
arahy.Tifrunner.gnm1.ann1.8EJC90 Arachis hypogaea HOM05D000324 ORTHO05D004875 2.4e-28 128.6 114 58.8
COL.COLO4_05432 Corchorus olitorius HOM05D000324 ORTHO05D004875 2.4e-28 128.6 116 58.6
Duzib212G0095 Durio zibethinus HOM05D000324 ORTHO05D004875 2.4e-28 128.6 116 57.8
FvH4_4g13151 Fragaria vesca HOM05D000324 ORTHO05D004875 2.4e-28 128.6 116 61.2
Peaxi162Scf00286g01036 Petunia axillaris HOM05D000324 ORTHO05D004875 2.4e-28 128.6 103 65.0
PGSC0003DMG400020593 Solanum tuberosum HOM05D000324 ORTHO05D004875 2.4e-28 128.6 116 59.5
Actinidia20854 Actinidia chinensis HOM05D000324 ORTHO05D004875 3.1e-28 128.3 116 59.5
DCAR_026665 Daucus carota HOM05D000324 ORTHO05D004875 3.1e-28 128.3 114 59.6
Gohir.D05G325350 Gossypium hirsutum HOM05D000324 ORTHO05D004875 3.1e-28 128.3 116 57.8
Hma1.2p1_0806F.1_g221370 Hydrangea macrophylla HOM05D000324 ORTHO05D004875 3.1e-28 128.3 68 91.2
Rhsim09G0061500 Rhododendron simsii HOM05D000324 ORTHO05D004875 3.1e-28 128.3 115 61.7
RcHm_v2.0_Chr4g0413021 Rosa chinensis HOM05D000324 ORTHO05D004875 3.1e-28 128.3 116 60.3
BcaB02g08635 Brassica carinata HOM05D000324 ORTHO05D004875 4.1e-28 127.9 109 62.4
C04p41750 Brassica napus HOM05D000324 ORTHO05D004875 4.1e-28 127.9 109 62.4
A03p43350 Brassica napus HOM05D000324 ORTHO05D004875 5.3e-28 127.5 117 58.1
A04p08090 Brassica napus HOM05D000324 ORTHO05D004875 5.3e-28 127.5 109 62.4
BraA04t16497Z Brassica rapa HOM05D000324 ORTHO05D004875 5.3e-28 127.5 109 62.4
Duzib268G1033 Durio zibethinus HOM05D000324 ORTHO05D004875 5.3e-28 127.5 116 57.8
Gohir.A05G322700 Gossypium hirsutum HOM05D000324 ORTHO05D004875 5.3e-28 127.5 116 56.9
RcHm_v2.0_Chr4g0412911 Rosa chinensis HOM05D000324 ORTHO05D004875 5.3e-28 127.5 116 59.5
Aa31LG9G3300 Aethionema arabicum HOM05D000324 ORTHO05D004875 7.0e-28 127.1 117 57.3
Oeu050714.1 Olea europaea HOM05D000324 ORTHO05D004875 7.0e-28 127.1 116 58.6
COL.COLO4_05433 Corchorus olitorius HOM05D000324 ORTHO05D004875 9.1e-28 126.7 116 58.6
AT3G23790 Arabidopsis thaliana HOM05D000324 ORTHO05D004875 1.2e-27 126.3 117 58.1
CANSAT78G1272 Cannabis sativa HOM05D000324 ORTHO05D004875 1.2e-27 126.3 116 58.6
FAN17G1435 Fragaria x ananassa HOM05D000324 ORTHO05D004875 1.2e-27 126.3 116 59.5
RcHm_v2.0_Chr4g0413231 Rosa chinensis HOM05D000324 ORTHO05D004875 1.2e-27 126.3 116 60.3
Sabra17G0053900 Salix brachista HOM05D000324 ORTHO05D004875 1.2e-27 126.3 116 59.5
CARHR099770 Cardamine hirsuta HOM05D000324 ORTHO05D004875 1.6e-27 125.9 117 58.1
ECA248G0353 Erigeron canadensis HOM05D000324 ORTHO05D004875 1.6e-27 125.9 116 59.5
MBI07_g15662_MAGBIO Magnolia biondii HOM05D000324 ORTHO05D004875 1.6e-27 125.9 115 59.1
MD04G1018900 Malus domestica HOM05D000324 ORTHO05D004875 1.6e-27 125.9 116 57.8
Potri.017G060100 Populus trichocarpa HOM05D000324 ORTHO05D004875 1.6e-27 125.9 116 59.5
TAR362G1108 Trochodendron aralioides HOM05D000324 ORTHO05D004875 1.6e-27 125.9 115 60.0
Actinidia35826 Actinidia chinensis HOM05D000324 ORTHO05D004875 2.0e-27 125.6 116 56.9
BolC4t25753H Brassica oleracea HOM05D000324 ORTHO05D004875 2.0e-27 125.6 109 61.5
Gohir.A10G128800 Gossypium hirsutum HOM05D000324 ORTHO05D004875 2.0e-27 125.6 116 56.9
Medtr3g084470 Medicago truncatula HOM05D000324 ORTHO05D004875 2.0e-27 125.6 114 59.6
Sp7g11870 Schrenkiella parvula HOM05D000324 ORTHO05D004875 2.0e-27 125.6 110 62.7
THA.LOC104804788 Tarenaya hassleriana HOM05D000324 ORTHO05D004875 2.0e-27 125.6 117 59.0
TPR.G28942 Trifolium pratense HOM05D000324 ORTHO05D004875 2.0e-27 125.6 115 56.5
Aqoxy2G03912 Aquilegia oxysepala HOM05D000324 ORTHO05D004875 2.7e-27 125.2 109 63.3
AL7G42350 Arabidopsis lyrata HOM05D000324 ORTHO05D004875 2.7e-27 125.2 106 62.3
Carub.0003s2409 Capsella rubella HOM05D000324 ORTHO05D004875 2.7e-27 125.2 117 58.1
Ca_16424_v3 Cicer arietinum L. HOM05D000324 ORTHO05D004875 3.5e-27 124.8 115 56.5
ECA248G2180 Erigeron canadensis HOM05D000324 ORTHO05D004875 4.5e-27 124.4 116 59.5
Glyma.05G151200 Glycine max HOM05D000324 ORTHO05D004875 4.5e-27 124.4 115 56.5
MD04G1018700 Malus domestica HOM05D000324 ORTHO05D004875 4.5e-27 124.4 117 58.1
Medtr8g083170 Medicago truncatula HOM05D000324 ORTHO05D004875 4.5e-27 124.4 69 82.6
BcaC02g09362 Brassica carinata HOM05D000324 ORTHO05D004875 5.9e-27 124.0 109 60.6
Lalb_Chr11g0075861 Lupinus albus HOM05D000324 ORTHO05D004875 5.9e-27 124.0 115 57.4
Medtr3g084450 Medicago truncatula HOM05D000324 ORTHO05D004875 5.9e-27 124.0 115 57.4
PSO063G7360 Papaver somniferum HOM05D000324 ORTHO05D004875 5.9e-27 124.0 114 59.6
Atru.chr4.1549 Acer truncatum HOM05D000324 ORTHO05D004875 7.7e-27 123.6 116 56.9
AL3G38770 Arabidopsis lyrata HOM05D000324 ORTHO05D004875 7.7e-27 123.6 117 56.4
Glyma.11G254100 Glycine max HOM05D000324 ORTHO05D004875 7.7e-27 123.6 115 57.4
Thecc.04G193200 Theobroma cacao HOM05D000324 ORTHO05D004875 7.7e-27 123.6 116 57.8
Potri.001G321800 Populus trichocarpa HOM05D000324 ORTHO05D004875 1.0e-26 123.2 116 58.6
Lsat_1_v5_gn_1_70400 Lactuca sativa HOM05D000324 ORTHO05D004875 1.3e-26 122.9 69 84.1
Lalb_Chr13g0294751 Lupinus albus HOM05D000324 ORTHO05D004875 1.7e-26 122.5 115 57.4
Phvul.003G051300 Phaseolus vulgaris HOM05D000324 ORTHO05D004875 1.7e-26 122.5 69 81.2
QL06p026611 Quercus lobata HOM05D000324 ORTHO05D004875 1.7e-26 122.5 116 56.9
Hund19019 Selenicereus undatus HOM05D000324 ORTHO05D004875 1.7e-26 122.5 115 57.4
Ca_17999_v3 Cicer arietinum L. HOM05D000324 ORTHO05D004875 2.2e-26 122.1 69 79.7
Phvul.001G265700 Phaseolus vulgaris HOM05D000324 ORTHO05D004875 2.2e-26 122.1 69 82.6
Gohir.D10G137300 Gossypium hirsutum HOM05D000324 ORTHO05D004875 2.9e-26 121.7 116 55.2
Lsat_1_v5_gn_1_70301 Lactuca sativa HOM05D000324 ORTHO05D004875 2.9e-26 121.7 69 82.6
SalBow8G0037 Salvia bowleyana HOM05D000324 ORTHO05D004875 2.9e-26 121.7 116 56.0
THA.LOC104808688 Tarenaya hassleriana HOM05D000324 ORTHO05D004875 2.9e-26 121.7 118 55.1
ClCG06G003220 Citrullus lanatus HOM05D000324 ORTHO05D004875 3.8e-26 121.3 116 57.8
Lsat_1_v5_gn_1_70360 Lactuca sativa HOM05D000324 ORTHO05D004875 3.8e-26 121.3 69 82.6
PSO017G1881 Papaver somniferum HOM05D000324 ORTHO05D004875 3.8e-26 121.3 69 84.1
Psat7g076000 Pisum sativum HOM05D000324 ORTHO05D004875 3.8e-26 121.3 69 78.3
Sopen09g035350 Solanum pennellii HOM05D000324 ORTHO05D004875 3.8e-26 121.3 116 56.9
VMungo1383G3515 Vigna mungo HOM05D000324 ORTHO05D004875 3.8e-26 121.3 69 81.2
CARHR220060 Cardamine hirsuta HOM05D000324 ORTHO05D004875 5.0e-26 120.9 106 58.5
Migut.G00782 Erythranthe guttata HOM05D000324 ORTHO05D004875 5.0e-26 120.9 116 55.2
Gorai.011G152500 Gossypium raimondii HOM05D000324 ORTHO05D004875 5.0e-26 120.9 69 81.2
vmacro00432 Vaccinium macrocarpon HOM05D000324 ORTHO05D004875 5.0e-26 120.9 69 88.4
AUR62018517 Chenopodium quinoa HOM05D000324 ORTHO05D004875 6.5e-26 120.6 116 56.0
Lj6g0003386 Lotus japonicus HOM05D000324 ORTHO05D004875 1.1e-25 119.8 69 81.2
AUR62020902 Chenopodium quinoa HOM05D000324 ORTHO05D004875 1.5e-25 119.4 116 56.0
Lj4g0014913 Lotus japonicus HOM05D000324 ORTHO05D004875 1.5e-25 119.4 69 76.8
Sed0014440 Sechium edule HOM05D000324 ORTHO05D004875 1.5e-25 119.4 116 54.3
Ah.04g149530 Amaranthus hybridus HOM05D000020 ORTHO05D004875 1.9e-25 119.0 116 54.3
EL10Ac3g07424 Beta vulgaris HOM05D000324 ORTHO05D004875 1.9e-25 119.0 116 55.2
Hund24436 Selenicereus undatus HOM05D000324 ORTHO05D004875 1.9e-25 119.0 90 70.0
Solyc09g092450.3 Solanum lycopersicum HOM05D000324 ORTHO05D004875 1.9e-25 119.0 116 55.2
ECA248G0929 Erigeron canadensis HOM05D000324 ORTHO05D004875 2.5e-25 118.6 116 58.6
Nn1g08151 Nelumbo nucifera HOM05D000324 ORTHO05D004875 2.5e-25 118.6 115 55.7
TPR.G11871 Trifolium pratense HOM05D000324 ORTHO05D004875 3.2e-25 118.2 69 78.3
Psat5g099440 Pisum sativum HOM05D000324 ORTHO05D004875 4.2e-25 117.9 68 80.9
CsaV3_6G001070 Cucumis sativus L. HOM05D000324 ORTHO05D004875 1.2e-24 116.3 116 55.2
Zm00001eb064380 Zea mays HOM05D000324 ORTHO05D004875 3.6e-24 114.8 114 51.8
Hund24430 Selenicereus undatus HOM05D000324 ORTHO05D004875 1.0e-23 113.2 69 79.7
ATR0069G039 Amborella trichopoda HOM05D000324 ORTHO05D004875 3.0e-23 111.7 68 77.9
PGR083G2335 Punica granatum HOM05D000324 ORTHO05D004875 5.2e-23 110.9 89 65.2
Os03g0845500 Oryza sativa ssp. japonica HOM05D000324 ORTHO05D004875 2.6e-22 108.6 114 50.9
SMO364G0046 Selaginella moellendorffii HOM05D000324 ORTHO05D004875 1.1e-20 103.2 92 54.3
Pp3c19_18340 Physcomitrium patens HOM05D000324 ORTHO05D004875 1.2e-19 99.8 69 65.2
Pp3c8_18330 Physcomitrium patens HOM05D000324 ORTHO05D004875 2.9e-18 95.1 69 59.4
Pp3c23_17210 Physcomitrium patens HOM05D000324 ORTHO05D004875 6.5e-18 94.0 69 60.9
Mapoly0169s0028 Marchantia polymorpha HOM05D000324 ORTHO05D004875 2.5e-17 92.0 69 56.5
CBR_g38044 Chara braunii HOM05D000324 ORTHO05D004875 4.2e-17 91.3 69 59.4
SGA_v2.0_scaffold19G08786 Striga asiatica HOM05D000324 ORTHO05D004875 1.6e-16 89.4 108 45.4
MELO3C021161.2 Cucumis melo HOM05D000324 ORTHO05D004875 4.7e-16 87.8 102 48.0
Hma1.2p1_0424F.1_g150260 Hydrangea macrophylla HOM05D000169 ORTHO05D004875 1.5e-14 82.8 42 88.1
Prupe.1G168200 Prunus persica HOM05D000324 ORTHO05D004875 3.4e-14 81.6 42 85.7
Oeu049053.1 Olea europaea HOM05D000324 ORTHO05D004875 7.5e-14 80.5 43 76.7
CDE05G1202 Ceratophyllum demersum HOM05D000324 ORTHO05D004875 8.3e-13 77.0 69 62.3
TPR.G28941 Trifolium pratense HOM05D000324 ORTHO05D004875 3.1e-12 75.1 42 76.2
Cre06.g299800 Chlamydomonas reinhardtii HOM05D000324 ORTHO05D004875 5.4e-12 74.3 69 53.6
SEGI_35349 Sequoiadendron giganteum HOM05D000324 ORTHO05D004875 1.3e-10 69.7 44 68.2
AagrBONN_evm.TU.Sc2ySwM_344.4832 Anthoceros agrestis HOM05D000324 ORTHO05D004875 8.0e-08 60.5 42 59.5
Prupe.1G187500 Prunus persica HOM05D000324 ORTHO05D004875 6.8e-07 57.4 75 49.3


User provided reference genes

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