Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A264G15 Lonicera japonica HOM05D005511 ORTHO05D006616 0.0e+00 1165.2 618 100.0
Dinv37487 Davidia involucrata HOM05D005511 ORTHO05D006616 2.1e-205 719.5 643 65.9
Dinv38802 Davidia involucrata HOM05D005511 ORTHO05D006616 7.4e-190 667.9 630 63.3
QL12p025629 Quercus lobata HOM05D005511 ORTHO05D006616 5.8e-187 658.3 636 60.1
CSS0031635 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 1.9e-185 653.3 640 63.9
Actinidia31365 Actinidia chinensis HOM05D005511 ORTHO05D006616 3.2e-185 652.5 620 61.5
Ciclev10014516m.g Citrus clementina HOM05D005511 ORTHO05D006616 3.2e-185 652.5 621 62.0
Hma1.2p1_1470F.1_g285590 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 3.2e-185 652.5 632 61.6
Rhsim04G0157200 Rhododendron simsii HOM05D005511 ORTHO05D006616 1.0e-183 647.5 592 66.0
Eucgr.H04509 Eucalyptus grandis HOM05D005511 ORTHO05D006616 2.8e-181 639.4 612 61.6
TAR624G0177 Trochodendron aralioides HOM05D005511 ORTHO05D006616 2.8e-181 639.4 650 62.9
TWI34G0645 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 1.8e-180 636.7 638 58.9
Cfa013295 Carpinus fangiana HOM05D005511 ORTHO05D006616 2.0e-179 633.3 640 62.0
vmacro03505 Vaccinium macrocarpon HOM05D005511 ORTHO05D006616 2.6e-179 632.9 603 62.7
GSVIVG01014608001 Vitis vinifera HOM05D005511 ORTHO05D006616 2.9e-178 629.4 638 60.0
GSVIVG01029743001 Vitis vinifera HOM05D005511 ORTHO05D006616 1.4e-177 627.1 639 60.9
Cc03_g10050 Coffea canephora HOM05D005511 ORTHO05D006616 5.1e-175 618.6 635 59.7
Gohir.A06G108200 Gossypium hirsutum HOM05D005511 ORTHO05D006616 4.3e-174 615.5 630 58.1
Nitab4.5_0000167g0180 Nicotiana tabacum HOM05D005511 ORTHO05D006616 8.2e-173 611.3 642 58.1
Thecc.09G000500 Theobroma cacao HOM05D005511 ORTHO05D006616 1.4e-172 610.5 633 59.6
MSTRG.966 Avicennia marina HOM05D005511 ORTHO05D006616 6.9e-172 608.2 643 54.9
Gorai.010G125400 Gossypium raimondii HOM05D005511 ORTHO05D006616 9.1e-172 607.8 630 57.6
Lsat_1_v5_gn_4_32681 Lactuca sativa HOM05D005511 ORTHO05D006616 2.0e-171 606.7 627 60.9
Nitab4.5_0001801g0060 Nicotiana tabacum HOM05D005511 ORTHO05D006616 3.4e-171 605.9 628 58.6
COL.COLO4_18647 Corchorus olitorius HOM05D005511 ORTHO05D006616 1.0e-170 604.4 632 56.2
Nitab4.5_0013218g0030 Nicotiana tabacum HOM05D005511 ORTHO05D006616 2.2e-170 603.2 628 58.9
PGSC0003DMG400028246 Solanum tuberosum HOM05D005511 ORTHO05D006616 1.4e-169 600.5 631 58.5
Lalb_Chr25g0287701 Lupinus albus HOM05D005511 ORTHO05D006616 1.9e-169 600.1 644 55.0
TWI32G1116 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 1.9e-169 600.1 642 59.3
CiPaw.07G210700 Carya illinoinensis HOM05D005511 ORTHO05D006616 3.2e-169 599.4 636 56.4
Duzib168G0441 Durio zibethinus HOM05D005511 ORTHO05D006616 3.2e-169 599.4 630 59.0
CAN.G841.12 Capsicum annuum HOM05D005511 ORTHO05D006616 1.2e-168 597.4 628 57.3
ECA234G2010 Erigeron canadensis HOM05D005511 ORTHO05D006616 1.2e-168 597.4 607 61.0
Sopen10g032680 Solanum pennellii HOM05D005511 ORTHO05D006616 1.2e-168 597.4 634 57.7
Solyc10g083200.2 Solanum lycopersicum HOM05D005511 ORTHO05D006616 2.1e-168 596.7 634 57.6
Phvul.001G199500 Phaseolus vulgaris HOM05D005511 ORTHO05D006616 3.6e-168 595.9 656 55.9
CAN.G423.39 Capsicum annuum HOM05D005511 ORTHO05D006616 1.8e-167 593.6 633 56.2
Ca_09096_v3 Cicer arietinum L. HOM05D005511 ORTHO05D006616 5.1e-167 592.0 668 54.3
Peaxi162Scf00096g01112 Petunia axillaris HOM05D005511 ORTHO05D006616 2.0e-166 590.1 633 58.5
Hund14329 Selenicereus undatus HOM05D005511 ORTHO05D006616 4.4e-166 589.0 629 60.4
Oeu009791.1 Olea europaea HOM05D005511 ORTHO05D006616 1.3e-165 587.4 629 56.1
TPR.G32311 Trifolium pratense HOM05D005511 ORTHO05D006616 1.3e-165 587.4 643 57.2
Glyma.12G151100 Glycine max HOM05D005511 ORTHO05D006616 1.7e-165 587.0 656 55.6
Glyma.17G079400 Glycine max HOM05D005511 ORTHO05D006616 2.8e-165 586.3 658 55.8
HanXRQChr03g0093821 Helianthus annuus HOM05D005511 ORTHO05D006616 2.8e-165 586.3 567 61.4
DCAR_027476 Daucus carota HOM05D005511 ORTHO05D006616 3.7e-165 585.9 671 55.1
Peaxi162Scf01013g00235 Petunia axillaris HOM05D005511 ORTHO05D006616 3.7e-165 585.9 641 57.9
AT4G31200 Arabidopsis thaliana HOM05D005511 ORTHO05D006616 4.8e-165 585.5 612 56.5
Psat5g176520 Pisum sativum HOM05D005511 ORTHO05D006616 4.8e-165 585.5 639 57.4
VMungo1383G1052 Vigna mungo HOM05D005511 ORTHO05D006616 8.2e-165 584.7 653 56.7
ClCG05G026390 Citrullus lanatus HOM05D005511 ORTHO05D006616 5.9e-163 578.6 649 55.8
Cpa.g.sc81.17 Carica papaya HOM05D005511 ORTHO05D006616 7.7e-163 578.2 628 56.7
Thhalv10024645m.g Eutrema salsugineum HOM05D005511 ORTHO05D006616 2.9e-162 576.2 605 57.2
Sed0022409 Sechium edule HOM05D005511 ORTHO05D006616 3.8e-162 575.9 643 54.6
Oeu001428.2 Olea europaea HOM05D005511 ORTHO05D006616 6.5e-162 575.1 630 56.2
Potri.006G279800 Populus trichocarpa HOM05D005511 ORTHO05D006616 6.5e-162 575.1 641 57.3
EL10Ac5g11907 Beta vulgaris HOM05D005511 ORTHO05D006616 1.1e-161 574.3 631 58.2
Carub.0007s0934 Capsella rubella HOM05D005511 ORTHO05D006616 1.1e-161 574.3 607 56.8
Medtr1g092770 Medicago truncatula HOM05D005511 ORTHO05D006616 4.2e-161 572.4 642 54.5
AL7G20880 Arabidopsis lyrata HOM05D005511 ORTHO05D006616 5.5e-161 572.0 609 56.3
Ah.07g201420 Amaranthus hybridus HOM05D005511 ORTHO05D006616 1.6e-160 570.5 630 57.6
CsaV3_5G010440 Cucumis sativus L. HOM05D005511 ORTHO05D006616 2.7e-160 569.7 644 54.8
Manes.03G000300 Manihot esculenta HOM05D005511 ORTHO05D006616 2.7e-160 569.7 642 58.4
arahy.Tifrunner.gnm1.ann1.Q5NSRJ Arachis hypogaea HOM05D005511 ORTHO05D006616 6.1e-160 568.5 655 55.6
PSO541G5250 Papaver somniferum HOM05D005511 ORTHO05D006616 1.4e-159 567.4 660 58.3
Sc03g0008920 Simmondsia chinensis HOM05D005511 ORTHO05D006616 2.3e-159 566.6 611 58.9
CDE06G2039 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 3.0e-159 566.2 573 58.1
PGR142G1479 Punica granatum HOM05D005511 ORTHO05D006616 2.0e-158 563.5 631 56.4
Potri.018G002000 Populus trichocarpa HOM05D005511 ORTHO05D006616 4.4e-158 562.4 587 58.3
Aa31LG11G2310 Aethionema arabicum HOM05D005511 ORTHO05D006616 1.7e-157 560.5 617 54.8
CSS0032846 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 1.7e-157 560.5 593 60.7
Oeu018783.1 Olea europaea HOM05D005511 ORTHO05D006616 2.8e-157 559.7 644 56.1
CDE07G1638 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 4.8e-157 558.9 637 53.8
HPP92_005904 Vanilla planifolia HOM05D005511 ORTHO05D006616 4.8e-157 558.9 638 53.9
Sp7g29080 Schrenkiella parvula HOM05D005511 ORTHO05D006616 1.4e-156 557.4 614 56.8
Migut.H02336 Erythranthe guttata HOM05D005511 ORTHO05D006616 4.5e-155 552.4 620 55.8
Lj1g0000151 Lotus japonicus HOM05D005511 ORTHO05D006616 7.7e-155 551.6 643 53.8
AUR62007421 Chenopodium quinoa HOM05D005511 ORTHO05D006616 1.3e-154 550.8 626 59.4
CARHR239100 Cardamine hirsuta HOM05D005511 ORTHO05D006616 1.7e-154 550.4 614 56.4
arahy.Tifrunner.gnm1.ann1.V3D0DH Arachis hypogaea HOM05D005511 ORTHO05D006616 4.2e-153 545.8 685 52.7
CANSAT25G2351 Cannabis sativa HOM05D005511 ORTHO05D006616 9.4e-153 544.7 639 53.5
A01p07040 Brassica napus HOM05D005511 ORTHO05D006616 4.7e-152 542.3 610 56.2
THA.LOC104819918 Tarenaya hassleriana HOM05D005511 ORTHO05D006616 1.5e-150 537.3 617 54.3
BraA01t00656Z Brassica rapa HOM05D005511 ORTHO05D006616 1.3e-149 534.3 610 55.9
MELO3C018377.2 Cucumis melo HOM05D005511 ORTHO05D006616 3.7e-149 532.7 536 57.1
C01p07790 Brassica napus HOM05D005511 ORTHO05D006616 4.8e-149 532.3 609 55.5
BcaC09g51902 Brassica carinata HOM05D005511 ORTHO05D006616 6.3e-149 531.9 609 55.3
MBI02_g34313_MAGBIO Magnolia biondii HOM05D005511 ORTHO05D006616 4.1e-148 529.3 634 56.2
Aqoxy4G02032 Aquilegia oxysepala HOM05D005511 ORTHO05D006616 9.1e-148 528.1 519 58.6
Sabra18G0005200 Salix brachista HOM05D005511 ORTHO05D006616 6.5e-146 521.9 570 54.9
BolC1t00765H Brassica oleracea HOM05D005511 ORTHO05D006616 2.5e-145 520.0 609 55.0
Nn1g03658 Nelumbo nucifera HOM05D005511 ORTHO05D006616 3.0e-143 513.1 451 67.2
MD08G1126000 Malus domestica HOM05D005511 ORTHO05D006616 1.3e-141 507.7 655 53.0
Nitab4.5_0001579g0070 Nicotiana tabacum HOM05D005511 ORTHO05D006616 1.2e-139 501.1 690 51.2
ATR1145G079 Amborella trichopoda HOM05D005511 ORTHO05D006616 3.3e-137 493.0 658 48.5
MD15G1105800 Malus domestica HOM05D005511 ORTHO05D006616 9.5e-137 491.5 662 51.1
Prupe.1G457600 Prunus persica HOM05D005511 ORTHO05D006616 3.0e-135 486.5 651 54.2
SGA_v2.0_scaffold188G40311 Striga asiatica HOM05D005511 ORTHO05D006616 2.0e-134 483.8 474 58.9
ATR0686G209 Amborella trichopoda HOM05D005511 ORTHO05D006616 3.4e-134 483.0 662 48.3
Os06g0682700 Oryza sativa ssp. japonica HOM05D005511 ORTHO05D006616 1.7e-133 480.7 493 56.6
FAN27G2128 Fragaria x ananassa HOM05D005511 ORTHO05D007122 3.5e-123 446.4 504 55.0
unitig_32.g11169 Utricularia gibba HOM05D005511 ORTHO05D006616 1.3e-122 444.5 596 48.2
FAN20G1701 Fragaria x ananassa HOM05D005511 ORTHO05D007122 4.7e-120 436.0 505 54.3
FvH4_2g36600 Fragaria vesca HOM05D005511 ORTHO05D006616 4.0e-119 433.0 528 53.6
FAN15G0681 Fragaria x ananassa HOM05D005511 ORTHO05D006616 3.4e-118 429.9 506 53.2
Atru.chr7.2702 Acer truncatum HOM05D005511 ORTHO05D006616 7.5e-118 428.7 356 69.1
Sc03g0008950 Simmondsia chinensis HOM05D005511 ORTHO05D006616 8.3e-117 425.2 412 59.0
AUR62027311 Chenopodium quinoa HOM05D005511 ORTHO05D006616 1.5e-113 414.5 449 57.2
RcHm_v2.0_Chr6g0305221 Rosa chinensis HOM05D005511 ORTHO05D006616 1.2e-112 411.4 478 53.6
Haze_21773 Corylus avellana HOM05D005511 ORTHO05D006616 2.2e-109 400.6 355 68.2
Mapoly0058s0003 Marchantia polymorpha HOM05D005511 ORTHO05D006616 3.3e-105 386.7 527 47.2
Pp3c17_14220 Physcomitrium patens HOM05D005511 ORTHO05D006616 1.6e-104 384.4 533 45.4
SMO147G0244 Selaginella moellendorffii HOM05D005511 ORTHO05D006616 2.0e-78 297.7 448 42.6
Sabra06G0216800 Salix brachista HOM05D005511 ORTHO05D006616 2.6e-78 297.4 351 59.5
Zm00001eb273620 Zea mays HOM05D005511 ORTHO05D006616 1.8e-74 284.6 312 53.8
SHI01951 Sapria himalayana HOM05D000002 ORTHO05D000001 3.8e-69 266.9 335 56.7
Sabra06G0216900 Salix brachista HOM05D005511 ORTHO05D006616 3.2e-60 237.3 291 50.9
CBR_g29483 Chara braunii HOM05D000785 ORTHO05D006616 3.9e-58 230.3 702 29.5
ATR0686G036 Amborella trichopoda HOM05D005511 ORTHO05D006616 8.8e-58 229.2 266 51.9
MELO3C003615.2 Cucumis melo HOM05D005511 ORTHO05D006616 2.5e-57 227.6 221 61.5
CBR_g44445 Chara braunii HOM05D005511 ORTHO05D006616 4.3e-57 226.9 722 28.9
Atru.chr7.2703 Acer truncatum HOM05D005511 ORTHO05D006616 5.3e-55 219.9 250 52.8
SEGI_09992 Sequoiadendron giganteum HOM05D005511 ORTHO05D006616 2.6e-54 217.6 313 45.0
SHI01952 Sapria himalayana HOM05D005511 ORTHO05D006616 8.5e-53 212.6 290 47.2
unitig_748.g7741 Utricularia gibba HOM05D005511 ORTHO05D006616 2.2e-48 198.0 245 47.3
Hma1.2p1_0379F.1_g139860 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 1.1e-47 195.7 253 47.8
Haze_21772 Corylus avellana HOM05D005511 ORTHO05D006616 3.5e-46 190.7 261 47.1
CDE06G0583 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 1.0e-45 189.1 184 52.2
ATR1145G067 Amborella trichopoda HOM05D005511 ORTHO05D006616 1.5e-41 175.3 181 53.6
Actinidia34689 Actinidia chinensis HOM05D005511 ORTHO05D006616 4.1e-31 140.6 104 73.1
Cre04.g222300 Chlamydomonas reinhardtii HOM05D005511 ORTHO05D006616 2.1e-27 128.3 423 28.8
Psat6g134200 Pisum sativum HOM05D005511 ORTHO05D006616 4.7e-27 127.1 101 69.3
AagrBONN_evm.TU.Sc2ySwM_228.1219 Anthoceros agrestis HOM05D005511 ORTHO05D006616 6.8e-26 123.2 138 56.5
CANSAT21G0937 Cannabis sativa HOM05D005511 ORTHO05D006616 1.3e-21 109.0 449 28.1
PGSC0003DMG400027627 Solanum tuberosum HOM05D005511 ORTHO05D006616 1.1e-20 105.9 80 68.8
Actinidia02692 Actinidia chinensis HOM05D005511 ORTHO05D006616 1.3e-16 92.4 68 73.5
VMungo1383G0863 Vigna mungo HOM05D005511 ORTHO05D006616 6.3e-16 90.1 78 62.8
Sc03g0008960 Simmondsia chinensis HOM05D005511 ORTHO05D006616 2.9e-13 81.3 153 51.0
Nitab4.5_0000365g0090 Nicotiana tabacum HOM05D005511 ORTHO05D006616 1.5e-12 79.0 76 57.9
MCO14G468 Micromonas commoda HOM05D000251 ORTHO05D007889 1.3e-08 65.9 53 58.5
Pp3c6_280 Physcomitrium patens HOM05D000251 ORTHO05D007889 2.9e-08 64.7 60 46.7
MD06G1209200 Malus domestica HOM05D000251 ORTHO05D007889 1.6e-06 58.9 78 42.3
SEGI_09522 Sequoiadendron giganteum HOM05D000874 ORTHO05D001267 1.6e-06 58.9 67 46.3
Prupe.5G214300 Prunus persica HOM05D000251 ORTHO05D007889 2.0e-06 58.5 73 42.5
arahy.Tifrunner.gnm1.ann1.ESZ5GR Arachis hypogaea HOM05D000251 ORTHO05D007889 2.7e-06 58.2 68 41.2
arahy.Tifrunner.gnm1.ann1.MAJ7P0 Arachis hypogaea HOM05D000251 ORTHO05D007889 2.7e-06 58.2 68 41.2
MD14G1219700 Malus domestica HOM05D000251 ORTHO05D007889 2.7e-06 58.2 78 43.6
CANSAT80G2803 Cannabis sativa HOM05D000251 ORTHO05D007889 6.0e-06 57.0 64 42.2
PRCOL_00003186 Prasinoderma coloniale HOM05D000032 ORTHO05D006970 6.0e-06 57.0 44 54.5


User provided reference genes

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