Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A1009T56 Lonicera japonica HOM05D001558 ORTHO05D005808 8.8e-180 633.6 352 100.0
vmacro07436 Vaccinium macrocarpon HOM05D001558 ORTHO05D005808 4.4e-131 471.9 347 80.7
CSS0036487 Camellia sinensis var. sinensis HOM05D001558 ORTHO05D005808 8.1e-125 451.1 353 75.1
Rhsim03G0070000 Rhododendron simsii HOM05D001558 ORTHO05D005808 6.8e-116 421.4 347 74.1
CSS0019098 Camellia sinensis var. sinensis HOM05D001558 ORTHO05D005808 6.0e-112 408.3 347 72.0
Peaxi162Scf00069g00320 Petunia axillaris HOM05D001558 ORTHO05D005808 3.0e-111 406.0 349 70.5
Nitab4.5_0000573g0160 Nicotiana tabacum HOM05D001558 ORTHO05D005808 7.3e-110 401.4 349 70.5
EL10Ac7g16875 Beta vulgaris HOM05D001558 ORTHO05D005808 1.6e-109 400.2 377 66.6
Ciclev10011021m.g Citrus clementina HOM05D001558 ORTHO05D005808 3.6e-109 399.1 349 70.8
THA.LOC104816601 Tarenaya hassleriana HOM05D001558 ORTHO05D005808 3.1e-108 396.0 339 71.1
Nn6g34815 Nelumbo nucifera HOM05D001558 ORTHO05D005808 1.2e-107 394.0 347 70.9
Dinv31718 Davidia involucrata HOM05D001558 ORTHO05D005808 3.4e-107 392.5 349 69.3
AUR62036988 Chenopodium quinoa HOM05D001558 ORTHO05D005808 3.8e-106 389.0 351 69.5
Cc06_g06160 Coffea canephora HOM05D001558 ORTHO05D005808 1.6e-104 383.6 349 69.3
Sabra16G0078200 Salix brachista HOM05D001558 ORTHO05D005808 1.3e-103 380.6 403 61.5
Actinidia04015 Actinidia chinensis HOM05D001558 ORTHO05D005808 1.7e-103 380.2 349 67.3
Oeu007200.1 Olea europaea HOM05D001558 ORTHO05D005808 5.1e-103 378.6 347 69.2
TWI77G0440 Tripterygium wilfordii HOM05D001558 ORTHO05D005808 5.1e-103 378.6 349 68.5
Haze_19651 Corylus avellana HOM05D001558 ORTHO05D005808 1.1e-102 377.5 349 68.5
Actinidia05402 Actinidia chinensis HOM05D001558 ORTHO05D005808 2.5e-102 376.3 349 67.9
HanXRQChr06g0176131 Helianthus annuus HOM05D001558 ORTHO05D005808 3.3e-102 375.9 349 66.8
Thecc.05G095300 Theobroma cacao HOM05D001558 ORTHO05D005808 4.3e-102 375.6 349 68.5
Cpa.g.sc104.95 Carica papaya HOM05D001558 ORTHO05D005808 7.4e-102 374.8 349 67.6
COL.COLO4_29672 Corchorus olitorius HOM05D001558 ORTHO05D005808 2.8e-101 372.9 349 67.6
CiPaw.09G017100 Carya illinoinensis HOM05D001558 ORTHO05D005808 4.8e-101 372.1 349 67.3
TWI74G0547 Tripterygium wilfordii HOM05D001558 ORTHO05D005808 3.1e-100 369.4 349 67.3
Prupe.7G101600 Prunus persica HOM05D001558 ORTHO05D005808 9.0e-100 367.9 347 66.9
Zm00001eb039370 Zea mays HOM05D001558 ORTHO05D005808 9.0e-100 367.9 325 67.7
Duzib093G1606 Durio zibethinus HOM05D001558 ORTHO05D005808 1.5e-99 367.1 347 67.4
THA.LOC104809967 Tarenaya hassleriana HOM05D001558 ORTHO05D005808 2.0e-99 366.7 343 68.5
Sabra06G0160700 Salix brachista HOM05D001558 ORTHO05D005808 5.8e-99 365.2 349 64.8
AUR62006225 Chenopodium quinoa HOM05D001558 ORTHO05D005808 7.6e-99 364.8 352 66.5
Eucgr.K02568 Eucalyptus grandis HOM05D001558 ORTHO05D005808 7.6e-99 364.8 351 67.0
TAR623G1089 Trochodendron aralioides HOM05D001558 ORTHO05D005808 2.2e-98 363.2 350 68.3
Potri.016G075700 Populus trichocarpa HOM05D001558 ORTHO05D005808 4.9e-98 362.1 349 65.9
Gorai.002G238200 Gossypium raimondii HOM05D001558 ORTHO05D005808 6.4e-98 361.7 347 67.7
Aqoxy4G02724 Aquilegia oxysepala HOM05D001558 ORTHO05D005808 1.9e-97 360.1 347 64.6
Gohir.D01G194100 Gossypium hirsutum HOM05D001558 ORTHO05D005808 1.9e-97 360.1 347 67.7
PGSC0003DMG400008939 Solanum tuberosum HOM05D001558 ORTHO05D005808 2.4e-97 359.8 349 65.9
Glyma.02G201300 Glycine max HOM05D001558 ORTHO05D005808 4.2e-97 359.0 347 66.9
Migut.J01002 Erythranthe guttata HOM05D001558 ORTHO05D005808 5.5e-97 358.6 349 66.2
Manes.09G052300 Manihot esculenta HOM05D001558 ORTHO05D005808 5.5e-97 358.6 347 67.1
Potri.006G208900 Populus trichocarpa HOM05D001558 ORTHO05D005808 7.1e-97 358.2 349 65.0
PGR142G1086 Punica granatum HOM05D001558 ORTHO05D005808 7.1e-97 358.2 349 65.9
Sopen09g004920 Solanum pennellii HOM05D001558 ORTHO05D005808 9.3e-97 357.8 349 65.6
Solyc09g010180.3 Solanum lycopersicum HOM05D001558 ORTHO05D005808 2.1e-96 356.7 349 65.6
MSTRG.19276 Avicennia marina HOM05D001558 ORTHO05D005808 2.7e-96 356.3 349 65.6
Manes.08G028400 Manihot esculenta HOM05D001558 ORTHO05D005808 2.7e-96 356.3 346 65.6
Glyma.10G075300 Glycine max HOM05D001558 ORTHO05D005808 3.5e-96 355.9 348 66.4
Gohir.A01G204700 Gossypium hirsutum HOM05D001558 ORTHO05D005808 3.5e-96 355.9 347 67.7
GSVIVG01033891001 Vitis vinifera HOM05D001558 ORTHO05D005808 4.6e-96 355.5 348 67.0
SGA_v2.0_scaffold13G06695 Striga asiatica HOM05D001558 ORTHO05D005808 1.8e-95 353.6 349 65.9
Phvul.007G153100 Phaseolus vulgaris HOM05D001558 ORTHO05D005808 5.1e-95 352.1 348 66.1
Lsat_1_v5_gn_8_74960 Lactuca sativa HOM05D001558 ORTHO05D005808 1.9e-94 350.1 344 65.1
Lj5g0025907 Lotus japonicus HOM05D001558 ORTHO05D005808 5.6e-94 348.6 348 65.8
CAN.G397.87 Capsicum annuum HOM05D001558 ORTHO05D005808 7.4e-94 348.2 349 64.5
Medtr1g059610 Medicago truncatula HOM05D001558 ORTHO05D005808 9.6e-94 347.8 349 65.0
ATR0820G233 Amborella trichopoda HOM05D001558 ORTHO05D005808 2.8e-93 346.3 360 59.4
arahy.Tifrunner.gnm1.ann1.VDQ48T Arachis hypogaea HOM05D001558 ORTHO05D005808 3.7e-93 345.9 347 65.4
arahy.Tifrunner.gnm1.ann1.XHST8G Arachis hypogaea HOM05D001558 ORTHO05D005808 3.7e-93 345.9 347 65.4
Ca_24224_v3 Cicer arietinum L. HOM05D001558 ORTHO05D005808 2.4e-92 343.2 354 64.1
CARHR086090 Cardamine hirsuta HOM05D001558 ORTHO05D005808 5.3e-92 342.0 338 66.0
TPR.G14787 Trifolium pratense HOM05D001558 ORTHO05D005808 6.9e-92 341.7 349 65.0
HanXRQChr05g0133061 Helianthus annuus HOM05D001558 ORTHO05D005808 2.2e-90 336.7 349 62.8
HPP92_001970 Vanilla planifolia HOM05D001558 ORTHO05D005808 3.8e-90 335.9 289 69.9
Aa31LG3G4940 Aethionema arabicum HOM05D001558 ORTHO05D005808 4.9e-90 335.5 347 65.4
Duzib106G1253 Durio zibethinus HOM05D001558 ORTHO05D005808 8.4e-90 334.7 373 61.4
SEGI_01931 Sequoiadendron giganteum HOM05D001558 ORTHO05D005808 1.0e-87 327.8 321 66.0
Carub.0003s1086 Capsella rubella HOM05D001558 ORTHO05D005808 1.3e-87 327.4 338 64.5
Thhalv10020017m.g Eutrema salsugineum HOM05D001558 ORTHO05D005808 5.1e-87 325.5 338 63.9
AT3G11540 Arabidopsis thaliana HOM05D001558 ORTHO05D005808 6.7e-87 325.1 338 64.2
unitig_744.g24703 Utricularia gibba HOM05D001558 ORTHO05D005808 8.7e-87 324.7 321 67.0
TAR369G0994 Trochodendron aralioides HOM05D001558 ORTHO05D005808 1.9e-86 323.6 350 62.6
CANSAT64G1174 Cannabis sativa HOM05D001558 ORTHO05D005808 3.3e-86 322.8 345 62.0
Lalb_Chr20g0111601 Lupinus albus HOM05D001558 ORTHO05D005808 1.3e-85 320.9 338 63.9
PSO384G0942 Papaver somniferum HOM05D001558 ORTHO05D005808 1.3e-85 320.9 351 60.4
C03p45000 Brassica napus HOM05D001558 ORTHO05D005808 2.8e-85 319.7 304 59.5
BcaB04g18647 Brassica carinata HOM05D001558 ORTHO05D005808 3.7e-85 319.3 338 63.0
MBI05_g03435_MAGBIO Magnolia biondii HOM05D001558 ORTHO05D005808 3.7e-85 319.3 341 61.3
Lalb_Chr25g0288211 Lupinus albus HOM05D001558 ORTHO05D005808 4.8e-85 318.9 341 63.9
ECA236G3012 Erigeron canadensis HOM05D001558 ORTHO05D005808 1.8e-84 317.0 349 59.9
Sp3g09780 Schrenkiella parvula HOM05D001558 ORTHO05D005808 1.8e-84 317.0 349 61.3
Oeu047838.2 Olea europaea HOM05D001558 ORTHO05D005808 6.9e-84 315.1 347 59.9
BcaC05g29357 Brassica carinata HOM05D001558 ORTHO05D005808 9.0e-84 314.7 339 63.4
C05p56410 Brassica napus HOM05D001558 ORTHO05D005808 9.0e-84 314.7 339 63.4
BolC5t34308H Brassica oleracea HOM05D001558 ORTHO05D005808 9.0e-84 314.7 339 63.4
BcaB06g25610 Brassica carinata HOM05D001558 ORTHO05D005808 1.0e-82 311.2 333 63.7
DCAR_012896 Daucus carota HOM05D001558 ORTHO05D005808 8.4e-82 308.1 348 60.3
AL3G23090 Arabidopsis lyrata HOM05D001558 ORTHO05D005808 1.4e-81 307.4 338 63.0
BraA03t12875Z Brassica rapa HOM05D001558 ORTHO05D005808 2.5e-81 306.6 308 65.6
QL07p038153 Quercus lobata HOM05D001558 ORTHO05D005808 4.2e-81 305.8 349 58.7
A03p37150 Brassica napus HOM05D001558 ORTHO05D005808 9.3e-81 304.7 308 65.3
PSO339G4154 Papaver somniferum HOM05D001558 ORTHO05D005808 9.3e-81 304.7 352 58.5
Sc20g0006410 Simmondsia chinensis HOM05D001558 ORTHO05D005808 2.1e-80 303.5 349 59.0
Psat6g080760 Pisum sativum HOM05D001558 ORTHO05D005808 7.9e-80 301.6 347 59.1
HPP92_001984 Vanilla planifolia HOM05D001558 ORTHO05D005808 1.0e-79 301.2 347 58.2
BolC3t16760H Brassica oleracea HOM05D001558 ORTHO05D005808 1.8e-79 300.4 300 66.0
Gohir.A11G318700 Gossypium hirsutum HOM05D001558 ORTHO05D005808 3.9e-79 299.3 347 59.7
RcHm_v2.0_Chr3g0474801 Rosa chinensis HOM05D001558 ORTHO05D005808 3.9e-79 299.3 348 59.8
Gorai.007G367900 Gossypium raimondii HOM05D001558 ORTHO05D005808 5.1e-79 298.9 349 59.6
Gohir.D11G337900 Gossypium hirsutum HOM05D001558 ORTHO05D005808 6.7e-79 298.5 349 59.3
MD12G1030800 Malus domestica HOM05D001558 ORTHO05D005808 1.5e-78 297.4 347 60.5
Dinv21169 Davidia involucrata HOM05D001558 ORTHO05D005808 1.9e-78 297.0 283 68.2
BcaC01g04107 Brassica carinata HOM05D001558 ORTHO05D005808 2.5e-78 296.6 300 65.3
Ah.02g111800 Amaranthus hybridus HOM05D001558 ORTHO05D005808 3.3e-78 296.2 347 59.1
A05p37790 Brassica napus HOM05D001558 ORTHO05D005808 9.7e-78 294.7 339 61.4
BraA05t22574Z Brassica rapa HOM05D001558 ORTHO05D005808 9.7e-78 294.7 339 61.4
MD14G1031300 Malus domestica HOM05D001558 ORTHO05D005808 6.3e-77 292.0 347 59.4
SHI12376 Sapria himalayana HOM05D001558 ORTHO05D005808 1.5e-75 287.3 349 57.9
FAN05G0475 Fragaria x ananassa HOM05D001558 ORTHO05D005808 1.0e-74 284.6 347 57.3
FAN05G1606 Fragaria x ananassa HOM05D001558 ORTHO05D005808 1.0e-74 284.6 347 57.3
SGA_v2.0_scaffold31G12893 Striga asiatica HOM05D001558 ORTHO05D005808 5.0e-74 282.3 348 59.8
FAN02G4309 Fragaria x ananassa HOM05D001558 ORTHO05D005808 1.4e-73 280.8 348 56.6
Os08g0559300 Oryza sativa ssp. japonica HOM05D001558 ORTHO05D005808 3.2e-73 279.6 307 60.9
Actinidia27757 Actinidia chinensis HOM05D001558 ORTHO05D005808 6.1e-72 275.4 305 63.0
Phvul.001G192300 Phaseolus vulgaris HOM05D001558 ORTHO05D005808 1.3e-69 267.7 351 57.0
CiPaw.10G012400 Carya illinoinensis HOM05D001558 ORTHO05D005808 4.8e-69 265.8 254 72.0
VMungo1383G0961 Vigna mungo HOM05D001558 ORTHO05D005808 1.5e-67 260.8 351 55.6
FAN09G3352 Fragaria x ananassa HOM05D001558 ORTHO05D005808 7.7e-67 258.5 348 53.7
Pp3c2_30810 Physcomitrium patens HOM05D001558 ORTHO05D005808 1.6e-64 250.8 317 55.5
FAN14G2159 Fragaria x ananassa HOM05D001558 ORTHO05D005808 6.1e-64 248.8 382 50.0
Glyma.19G196000 Glycine max HOM05D001558 ORTHO05D005808 2.6e-62 243.4 351 53.6
FvH4_6g19470 Fragaria vesca HOM05D001558 ORTHO05D005808 3.7e-61 239.6 346 51.7
Glyma.03G198100 Glycine max HOM05D001558 ORTHO05D005808 4.8e-61 239.2 343 53.6
DCAR_019223 Daucus carota HOM05D001558 ORTHO05D021140 1.4e-60 237.7 241 55.2
MELO3C024563.2 Cucumis melo HOM05D001558 ORTHO05D005808 9.1e-60 235.0 349 50.7
CDE11G0510 Ceratophyllum demersum HOM05D001558 ORTHO05D005808 2.6e-59 233.4 341 46.9
Psat2g117440 Pisum sativum HOM05D001558 ORTHO05D005808 4.5e-59 232.6 250 51.6
Hma1.2p1_0820F.1_g224050 Hydrangea macrophylla HOM05D001558 ORTHO05D005808 5.9e-59 232.3 143 78.3
Mapoly0020s0107 Marchantia polymorpha HOM05D001558 ORTHO05D005808 5.0e-58 229.2 307 53.1
CsaV3_6G040850 Cucumis sativus L. HOM05D001558 ORTHO05D005808 8.5e-58 228.4 349 50.4
Sed0010659 Sechium edule HOM05D001558 ORTHO05D005808 1.2e-56 224.6 349 49.6
CSS0014933 Camellia sinensis var. sinensis HOM05D001558 ORTHO05D021140 2.0e-54 217.2 183 81.4
Atru.chr8.1448 Acer truncatum HOM05D001558 ORTHO05D005808 3.1e-52 209.9 236 66.1
Psat0ss5705g0120 Pisum sativum HOM05D001558 ORTHO05D021140 9.4e-49 198.4 230 48.3
MBI05_g32169_MAGBIO Magnolia biondii HOM05D001558 ORTHO05D005808 1.4e-47 194.5 212 52.4
SMO334G0063 Selaginella moellendorffii HOM05D001558 ORTHO05D005808 2.8e-37 160.2 299 46.8
AagrBONN_evm.TU.Sc2ySwM_228.5709 Anthoceros agrestis HOM05D001558 ORTHO05D005808 2.3e-31 140.6 253 50.2
Pp3c1_2450 Physcomitrium patens HOM05D001558 ORTHO05D005808 3.0e-31 140.2 367 40.6
Pp3c1_2460 Physcomitrium patens HOM05D001558 ORTHO05D005808 3.0e-31 140.2 367 40.6
Actinidia03913 Actinidia chinensis HOM05D001558 ORTHO05D030947 2.0e-27 127.5 265 38.1
DCAR_008674 Daucus carota HOM05D001558 ORTHO05D005808 1.9e-17 94.4 46 91.3
Psat0s1824g0040 Pisum sativum HOM05D001558 ORTHO05D021140 5.6e-17 92.8 49 83.7
Psat7g011440 Pisum sativum HOM05D000252 ORTHO05D015734 2.1e-11 74.3 88 46.6
vmacro16017 Vaccinium macrocarpon HOM05D001558 ORTHO05D426453 3.0e-10 70.5 38 81.6
Cre12.g552851 Chlamydomonas reinhardtii HOM05D001558 ORTHO05D005808 3.3e-09 67.0 160 53.8
CBR_g30524 Chara braunii HOM05D001558 ORTHO05D000048 7.3e-09 65.9 77 41.6
CSS0015510 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 1.2e-08 65.1 28 100.0


User provided reference genes

Program Settings