Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0027526 Lotus japonicus HOM05D004413 ORTHO05D005199 5.5e-245 850.5 421 100.0
arahy.Tifrunner.gnm1.ann1.8FHU3N Arachis hypogaea HOM05D004413 ORTHO05D005199 6.2e-148 528.1 402 69.7
Glyma.16G203400 Glycine max HOM05D004413 ORTHO05D005199 1.4e-147 526.9 402 69.2
arahy.Tifrunner.gnm1.ann1.X2RX6E Arachis hypogaea HOM05D004413 ORTHO05D005199 7.6e-146 521.2 402 69.2
Glyma.09G152600 Glycine max HOM05D004413 ORTHO05D005199 6.4e-145 518.1 402 68.4
Medtr6g463300 Medicago truncatula HOM05D004413 ORTHO05D005199 3.5e-143 512.3 404 68.1
Phvul.004G126300 Phaseolus vulgaris HOM05D004413 ORTHO05D005199 5.6e-141 505.0 402 64.2
TPR.G37653 Trifolium pratense HOM05D004413 ORTHO05D005199 2.6e-138 496.1 407 64.9
Lalb_Chr19g0124241 Lupinus albus HOM05D004413 ORTHO05D005199 3.4e-138 495.7 400 66.2
VMungo0464G1648 Vigna mungo HOM05D004413 ORTHO05D005199 3.4e-138 495.7 402 64.2
Ca_02163_v3 Cicer arietinum L. HOM05D004413 ORTHO05D005199 3.8e-137 492.3 400 65.2
TPR.G25309 Trifolium pratense HOM05D004413 ORTHO05D005199 1.1e-136 490.7 397 66.0
Psat1g110760 Pisum sativum HOM05D004413 ORTHO05D005199 2.2e-129 466.5 406 63.5
Haze_03259 Corylus avellana HOM05D004413 ORTHO05D005199 3.2e-128 462.6 402 61.9
Cfa010719 Carpinus fangiana HOM05D004413 ORTHO05D005199 1.3e-126 457.2 402 61.4
Thecc.01G415800 Theobroma cacao HOM05D004413 ORTHO05D005199 2.2e-124 449.9 409 57.9
Psat6g015760 Pisum sativum HOM05D004413 ORTHO05D005199 1.4e-123 447.2 316 72.2
MD07G1003300 Malus domestica HOM05D004413 ORTHO05D005199 6.9e-123 444.9 400 60.0
Lalb_Chr19g0124231 Lupinus albus HOM05D004413 ORTHO05D005199 1.0e-121 441.0 304 71.4
RcHm_v2.0_Chr7g0230361 Rosa chinensis HOM05D004413 ORTHO05D005199 2.9e-121 439.5 396 59.3
QL04p002426 Quercus lobata HOM05D004413 ORTHO05D005199 1.4e-120 437.2 441 54.6
QL04p000397 Quercus lobata HOM05D004413 ORTHO05D005199 5.5e-120 435.3 466 52.6
Manes.10G150400 Manihot esculenta HOM05D004413 ORTHO05D005199 4.6e-119 432.2 401 57.1
TWI09G1219 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 5.1e-118 428.7 402 56.2
MD02G1318000 Malus domestica HOM05D004413 ORTHO05D005199 1.1e-117 427.6 400 58.2
Gorai.004G174800 Gossypium raimondii HOM05D004413 ORTHO05D005199 2.5e-117 426.4 406 56.2
Atru.chr11.2687 Acer truncatum HOM05D004413 ORTHO05D005199 4.3e-117 425.6 409 56.7
Gohir.A01G019401 Gossypium hirsutum HOM05D004413 ORTHO05D005199 2.2e-116 423.3 403 55.6
Gohir.D08G167400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 2.2e-116 423.3 406 55.9
Ciclev10031642m.g Citrus clementina HOM05D004413 ORTHO05D005199 6.3e-116 421.8 403 56.8
Gohir.A08G005500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.4e-115 420.6 406 55.7
CSS0018065 Camellia sinensis var. sinensis HOM05D004413 ORTHO05D005199 1.8e-115 420.2 396 58.1
Duzib138G1189 Durio zibethinus HOM05D004413 ORTHO05D005199 1.5e-114 417.2 404 56.9
Gohir.A08G146400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 2.6e-114 416.4 405 55.3
TAR636G2532 Trochodendron aralioides HOM05D004413 ORTHO05D005199 4.5e-114 415.6 420 55.0
FAN13G1137 Fragaria x ananassa HOM05D004413 ORTHO05D005199 1.0e-113 414.5 395 57.5
FAN18G0644 Fragaria x ananassa HOM05D004413 ORTHO05D005199 1.3e-113 414.1 395 57.5
FAN08G0618 Fragaria x ananassa HOM05D004413 ORTHO05D005199 2.9e-113 412.9 404 56.7
CiPaw.16G012500 Carya illinoinensis HOM05D004413 ORTHO05D005199 8.5e-113 411.4 384 57.8
COL.COLO4_30064 Corchorus olitorius HOM05D004413 ORTHO05D005199 1.1e-112 411.0 404 56.7
FvH4_5g32720 Fragaria vesca HOM05D004413 ORTHO05D005199 1.1e-112 411.0 395 57.2
GSVIVG01001402001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.4e-112 410.6 399 55.4
Potri.001G228000 Populus trichocarpa HOM05D004413 ORTHO05D005199 4.2e-112 409.1 402 56.2
CANSAT01G0573 Cannabis sativa HOM05D004413 ORTHO05D005199 5.7e-109 398.7 374 57.0
CANSAT01G1789 Cannabis sativa HOM05D004413 ORTHO05D005199 9.7e-109 397.9 374 57.0
Sabra16G0135900 Salix brachista HOM05D004413 ORTHO05D005199 1.3e-108 397.5 417 54.9
MSTRG.28094 Avicennia marina HOM05D004413 ORTHO05D005199 2.2e-108 396.7 400 53.5
arahy.Tifrunner.gnm1.ann1.0XNQ2B Arachis hypogaea HOM05D004413 ORTHO05D005199 1.4e-107 394.0 392 56.9
Aa31LG1G19950 Aethionema arabicum HOM05D004413 ORTHO05D005199 5.3e-107 392.1 402 54.0
Oeu013591.1 Olea europaea HOM05D004413 ORTHO05D005199 9.1e-107 391.3 383 55.4
arahy.Tifrunner.gnm1.ann1.MVM3BY Arachis hypogaea HOM05D004413 ORTHO05D005199 1.2e-106 391.0 399 56.1
Sc17g0005470 Simmondsia chinensis HOM05D004413 ORTHO05D005199 1.2e-106 391.0 403 53.6
THA.LOC104826126 Tarenaya hassleriana HOM05D004413 ORTHO05D005199 2.0e-106 390.2 397 55.7
ClCG09G003830 Citrullus lanatus HOM05D004413 ORTHO05D005199 3.4e-106 389.4 401 53.6
CANSAT64G0940 Cannabis sativa HOM05D004413 ORTHO05D005199 2.2e-105 386.7 377 55.7
Rhsim01G0132100 Rhododendron simsii HOM05D004413 ORTHO05D005199 5.5e-104 382.1 491 47.3
GSVIVG01037065001 Vitis vinifera HOM05D004413 ORTHO05D005199 7.2e-104 381.7 271 67.2
Cpa.g.sc189.31 Carica papaya HOM05D004413 ORTHO05D005199 1.4e-102 377.5 378 54.0
CsaV3_7G031400 Cucumis sativus L. HOM05D004413 ORTHO05D005199 8.8e-102 374.8 401 52.9
Carub.0001s0418 Capsella rubella HOM05D004413 ORTHO05D005199 5.7e-101 372.1 403 50.6
PGR031G3941 Punica granatum HOM05D004413 ORTHO05D005199 3.7e-100 369.4 412 50.7
Nitab4.5_0001006g0010 Nicotiana tabacum HOM05D004413 ORTHO05D005199 4.8e-100 369.0 398 51.3
vmacro21162 Vaccinium macrocarpon HOM05D004413 ORTHO05D005199 8.2e-100 368.2 434 50.0
Nn3g19386 Nelumbo nucifera HOM05D004413 ORTHO05D005199 1.8e-99 367.1 423 48.5
Thhalv10007024m.g Eutrema salsugineum HOM05D004413 ORTHO05D005199 2.4e-99 366.7 413 49.9
Migut.N01644 Erythranthe guttata HOM05D004413 ORTHO05D005199 5.3e-99 365.5 385 50.1
Nitab4.5_0000346g0070 Nicotiana tabacum HOM05D004413 ORTHO05D005199 2.0e-98 363.6 389 51.9
CAN.G1393.6 Capsicum annuum HOM05D004413 ORTHO05D005199 3.5e-98 362.8 382 51.8
Prupe.2G005000 Prunus persica HOM05D004413 ORTHO05D005199 2.2e-97 360.1 401 52.4
Atru.chr1.1383 Acer truncatum HOM05D004413 ORTHO05D005199 2.9e-97 359.8 270 64.1
Sed0007945 Sechium edule HOM05D004413 ORTHO05D005199 6.5e-97 358.6 410 51.0
SGA_v2.0_scaffold95G28780 Striga asiatica HOM05D004413 ORTHO05D005199 1.1e-96 357.8 389 51.4
BcaC07g36870 Brassica carinata HOM05D004413 ORTHO05D005199 1.5e-96 357.5 403 51.1
AT1G04945 Arabidopsis thaliana HOM05D004413 ORTHO05D005199 4.2e-96 355.9 403 51.1
Cc02_g27150 Coffea canephora HOM05D004413 ORTHO05D005199 4.2e-96 355.9 282 63.1
Aqoxy2G00074 Aquilegia oxysepala HOM05D004413 ORTHO05D005199 9.4e-96 354.8 388 52.6
C08p01610 Brassica napus HOM05D004413 ORTHO05D005199 6.1e-95 352.1 403 50.9
BolC8t46964H Brassica oleracea HOM05D004413 ORTHO05D005199 6.1e-95 352.1 403 50.9
Peaxi162Scf01343g00011 Petunia axillaris HOM05D004413 ORTHO05D005199 6.1e-95 352.1 389 51.7
Sed0010518 Sechium edule HOM05D004413 ORTHO05D005199 1.8e-94 350.5 401 50.1
Solyc01g074020.3 Solanum lycopersicum HOM05D004413 ORTHO05D005199 1.8e-94 350.5 315 58.1
Sp1g03790 Schrenkiella parvula HOM05D004413 ORTHO05D005199 6.7e-94 348.6 399 49.1
CARHR004350 Cardamine hirsuta HOM05D004413 ORTHO05D005199 1.2e-93 347.8 407 47.7
AUR62016087 Chenopodium quinoa HOM05D004413 ORTHO05D005199 3.3e-93 346.3 410 48.5
Dinv43918 Davidia involucrata HOM05D004413 ORTHO05D005199 4.4e-93 345.9 373 51.2
A08p36630 Brassica napus HOM05D004413 ORTHO05D005199 9.7e-93 344.7 404 49.3
BraA08t35565Z Brassica rapa HOM05D004413 ORTHO05D005199 9.7e-93 344.7 404 49.3
AL1G14670 Arabidopsis lyrata HOM05D004413 ORTHO05D005199 1.7e-92 344.0 404 49.0
AUR62035034 Chenopodium quinoa HOM05D004413 ORTHO05D005199 1.7e-92 344.0 410 48.0
Lsat_1_v5_gn_4_46341 Lactuca sativa HOM05D004413 ORTHO05D005199 4.8e-92 342.4 396 50.0
Lj9A624G21 Lonicera japonica HOM05D004413 ORTHO05D005199 7.7e-90 335.1 405 48.4
BcaB03g13464 Brassica carinata HOM05D004413 ORTHO05D005199 1.0e-89 334.7 403 48.1
Hund04656 Selenicereus undatus HOM05D004413 ORTHO05D005199 1.3e-89 334.3 397 48.6
MELO3C023518.2 Cucumis melo HOM05D004413 ORTHO05D005199 1.4e-86 324.3 400 48.0
EL10Ac3g05776 Beta vulgaris HOM05D004413 ORTHO05D005199 2.3e-86 323.6 402 48.3
Hma1.2p1_0038F.1_g024150 Hydrangea macrophylla HOM05D004413 ORTHO05D005199 2.3e-86 323.6 411 47.0
HanXRQChr16g0520481 Helianthus annuus HOM05D004413 ORTHO05D005199 8.8e-86 321.6 295 57.3
PSO210G0136 Papaver somniferum HOM05D004413 ORTHO05D005199 9.1e-83 311.6 403 45.7
SHI15877 Sapria himalayana HOM05D004413 ORTHO05D005199 9.1e-83 311.6 410 46.3
CDE04G1207 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 2.7e-82 310.1 423 43.5
BcaC08g43081 Brassica carinata HOM05D004413 ORTHO05D005199 4.5e-82 309.3 240 62.5
Ah.07g208370 Amaranthus hybridus HOM05D004413 ORTHO05D005199 1.3e-81 307.8 405 44.9
C06p03410 Brassica napus HOM05D004413 ORTHO05D005199 1.3e-81 307.8 240 62.5
BolC6t35480H Brassica oleracea HOM05D004413 ORTHO05D005199 1.3e-81 307.8 240 62.5
PSO170G4481 Papaver somniferum HOM05D004413 ORTHO05D005199 1.5e-80 304.3 399 45.4
CDE12G0144 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 2.5e-80 303.5 423 42.8
PSO210G4410 Papaver somniferum HOM05D004413 ORTHO05D005199 2.5e-80 303.5 397 44.8
A06p04180 Brassica napus HOM05D004413 ORTHO05D005199 2.3e-78 297.0 280 55.7
BraA06t23623Z Brassica rapa HOM05D004413 ORTHO05D005199 2.3e-78 297.0 280 55.7
HPP92_005742 Vanilla planifolia HOM05D004413 ORTHO05D005199 9.8e-77 291.6 400 44.0
ATR0582G367 Amborella trichopoda HOM05D004413 ORTHO05D005199 9.5e-72 275.0 384 42.4
PGSC0003DMG400006318 Solanum tuberosum HOM05D004413 ORTHO05D005199 9.2e-67 258.5 322 48.8
Gohir.A11G220500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 3.9e-65 253.1 287 48.4
SEGI_33976 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 9.5e-64 248.4 279 49.1
Zm00001eb140340 Zea mays HOM05D004413 ORTHO05D005199 6.2e-63 245.7 295 45.8
unitig_578.g16701 Utricularia gibba HOM05D004413 ORTHO05D005199 3.1e-62 243.4 257 48.6
Os01g0962500 Oryza sativa ssp. japonica HOM05D004413 ORTHO05D005199 6.8e-62 242.3 308 46.4
Actinidia21569 Actinidia chinensis HOM05D004413 ORTHO05D005199 1.7e-60 237.7 289 47.1
Dinv43485 Davidia involucrata HOM05D004413 ORTHO05D005199 6.4e-60 235.7 167 65.9
ECA234G1090 Erigeron canadensis HOM05D004413 ORTHO05D005199 1.4e-59 234.6 333 45.0
Lj9A625T17 Lonicera japonica HOM05D004413 ORTHO05D005199 3.6e-55 219.9 343 42.6
SGA_v2.0_scaffold4G02237 Striga asiatica HOM05D004413 ORTHO05D005199 3.4e-53 213.4 188 56.4
SMO351G0528 Selaginella moellendorffii HOM05D004413 ORTHO05D005199 4.1e-51 206.5 290 41.7
Pp3c11_18200 Physcomitrium patens HOM05D004413 ORTHO05D005199 1.3e-49 201.4 277 43.7
Mapoly0103s0075 Marchantia polymorpha HOM05D004413 ORTHO05D005199 2.0e-45 187.6 284 39.8
Sopen01g033590 Solanum pennellii HOM05D004413 ORTHO05D005199 1.7e-44 184.5 189 52.4
DCAR_015691 Daucus carota HOM05D004413 ORTHO05D005199 4.2e-43 179.9 131 65.6
AagrBONN_evm.TU.Sc2ySwM_228.625 Anthoceros agrestis HOM05D004413 ORTHO05D005199 9.2e-43 178.7 275 42.9
GSVIVG01027705001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.6e-42 177.9 127 70.1
Cre01.g049400 Chlamydomonas reinhardtii HOM05D004413 ORTHO05D005199 2.7e-42 177.2 242 40.5
Sopen01g033580 Solanum pennellii HOM05D004413 ORTHO05D005199 1.5e-40 171.4 123 67.5
CBR_g50781 Chara braunii HOM05D004413 ORTHO05D005199 4.0e-38 163.3 243 38.3
PSO170G2986 Papaver somniferum HOM05D004413 ORTHO05D005199 2.0e-37 161.0 253 39.1
Actinidia21570 Actinidia chinensis HOM05D004413 ORTHO05D005199 7.1e-35 152.5 90 77.8
Aa31LG1G19980 Aethionema arabicum HOM05D004413 ORTHO05D005199 1.6e-34 151.4 188 48.4
GSVIVG01027710001 Vitis vinifera HOM05D004413 ORTHO05D005199 8.7e-33 145.6 102 71.6
Actinidia15863 Actinidia chinensis HOM05D004413 ORTHO05D005199 1.8e-30 137.9 80 80.0
SEGI_10444 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 3.1e-30 137.1 180 43.3
SEGI_03996 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 1.2e-29 135.2 180 41.7
A08p37250 Brassica napus HOM05D004413 ORTHO05D005199 7.9e-26 122.5 69 79.7
BraA09t42095Z Brassica rapa HOM05D004413 ORTHO05D005199 8.7e-25 119.0 98 52.0
GSVIVG01027698001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.1e-22 112.1 63 69.8
MCO07G333 Micromonas commoda HOM05D004413 ORTHO05D005199 4.5e-21 106.7 266 29.3
GSVIVG01018194001 Vitis vinifera HOM05D004413 ORTHO05D005199 4.5e-21 106.7 68 64.7
HanXRQChr11g0328201 Helianthus annuus HOM05D004413 ORTHO05D005199 9.9e-21 105.5 62 77.4
Manes.10G149900 Manihot esculenta HOM05D000073 ORTHO05D000033 2.2e-20 104.4 58 79.3
PRCOL_00005718 Prasinoderma coloniale HOM05D004413 ORTHO05D005199 4.9e-20 103.2 175 38.3
Actinidia15864 Actinidia chinensis HOM05D004413 ORTHO05D005199 1.1e-19 102.1 51 80.4
QL04p000430 Quercus lobata HOM05D004413 ORTHO05D005199 1.0e-17 95.5 216 37.0
TAR633G2579 Trochodendron aralioides HOM05D004413 ORTHO05D005199 1.0e-17 95.5 95 52.6
DCAR_015690 Daucus carota HOM05D004413 ORTHO05D005199 1.1e-16 92.0 217 35.0
GSVIVG01027714001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.9e-16 91.3 166 37.3
TWI73G0758 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 1.3e-15 88.6 96 51.0
GSVIVG01027696001 Vitis vinifera HOM05D004413 ORTHO05D005199 3.1e-14 84.0 48 70.8
GSVIVG01026105001 Vitis vinifera HOM05D004413 ORTHO05D005199 7.6e-13 79.3 63 55.6
GSVIVG01012403001 Vitis vinifera HOM05D004413 ORTHO05D005199 3.8e-12 77.0 53 60.4
Hma1.2p1_0276F.1_g111190 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 1.0e-09 68.9 68 44.1
Nitab4.5_0003792g0060 Nicotiana tabacum HOM05D004413 ORTHO05D005199 3.9e-09 67.0 72 45.8
GSVIVG01037069001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.3e-07 62.0 44 59.1


User provided reference genes

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