Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0026876 Lotus japonicus HOM05D007062 ORTHO05D008941 9.3e-122 440.7 300 100.0
Glyma.11G030700 Glycine max HOM05D007062 ORTHO05D008941 1.5e-87 327.0 270 90.4
TPR.G25898 Trifolium pratense HOM05D007062 ORTHO05D008941 5.9e-84 315.1 271 88.2
Phvul.002G061100 Phaseolus vulgaris HOM05D007062 ORTHO05D008941 9.7e-79 297.7 285 82.5
VMungo1215G0274 Vigna mungo HOM05D007062 ORTHO05D008941 1.2e-76 290.8 285 82.5
Medtr5g012110 Medicago truncatula HOM05D007062 ORTHO05D008941 8.5e-75 284.6 271 84.5
arahy.Tifrunner.gnm1.ann1.06MV4V Arachis hypogaea HOM05D007062 ORTHO05D008941 3.2e-74 282.7 269 83.3
arahy.Tifrunner.gnm1.ann1.FU46H2 Arachis hypogaea HOM05D007062 ORTHO05D008941 3.2e-74 282.7 269 83.3
TAR375G0275 Trochodendron aralioides HOM05D007062 ORTHO05D008941 3.7e-70 269.2 270 78.5
CSS0040813 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 8.3e-70 268.1 276 79.0
CSS0025302 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 1.1e-69 267.7 282 77.3
Lalb_Chr16g0379721 Lupinus albus HOM05D007062 ORTHO05D008941 1.0e-67 261.2 217 93.1
CiPaw.12G106400 Carya illinoinensis HOM05D007062 ORTHO05D008941 6.5e-67 258.5 281 76.5
Nitab4.5_0000993g0090 Nicotiana tabacum HOM05D007062 ORTHO05D008941 9.4e-66 254.6 272 77.2
PGSC0003DMG400004788 Solanum tuberosum HOM05D007062 ORTHO05D008941 1.2e-65 254.2 273 75.8
Sopen08g027570 Solanum pennellii HOM05D007062 ORTHO05D008941 2.1e-65 253.4 273 77.3
CAN.G1217.21 Capsicum annuum HOM05D007062 ORTHO05D008941 3.6e-65 252.7 270 76.3
Peaxi162Scf00002g00075 Petunia axillaris HOM05D007062 ORTHO05D008941 3.6e-65 252.7 271 76.0
Sed0027513 Sechium edule HOM05D007062 ORTHO05D008941 4.7e-65 252.3 272 76.1
Solyc08g079110.4 Solanum lycopersicum HOM05D007062 ORTHO05D008941 8.0e-65 251.5 270 76.7
Nitab4.5_0005649g0010 Nicotiana tabacum HOM05D007062 ORTHO05D008941 1.4e-64 250.8 272 76.8
SalBow6G7097 Salvia bowleyana HOM05D007062 ORTHO05D008941 4.0e-64 249.2 273 77.7
Atru.chr9.1388 Acer truncatum HOM05D007062 ORTHO05D008941 8.8e-64 248.1 270 75.9
Migut.A00806 Erythranthe guttata HOM05D007062 ORTHO05D008941 1.2e-63 247.7 278 73.0
Cpa.g.sc29.119 Carica papaya HOM05D007062 ORTHO05D008941 2.0e-63 246.9 271 74.9
ECA232G1654 Erigeron canadensis HOM05D007062 ORTHO05D008941 4.4e-63 245.7 290 71.0
Lsat_1_v5_gn_6_2361 Lactuca sativa HOM05D007062 ORTHO05D008941 9.8e-63 244.6 277 76.9
Actinidia02105 Actinidia chinensis HOM05D007062 ORTHO05D008941 2.8e-62 243.0 275 74.9
Prupe.5G075900 Prunus persica HOM05D007062 ORTHO05D008941 8.3e-62 241.5 284 71.1
Manes.01G076100 Manihot esculenta HOM05D007062 ORTHO05D008941 1.1e-61 241.1 283 67.8
GSVIVG01001267001 Vitis vinifera HOM05D007062 ORTHO05D008941 1.1e-61 241.1 273 74.0
Hund11577 Selenicereus undatus HOM05D007062 ORTHO05D008941 1.4e-61 240.7 250 75.6
QL12p014002 Quercus lobata HOM05D007062 ORTHO05D008941 1.8e-61 240.4 313 49.8
MSTRG.25539 Avicennia marina HOM05D007062 ORTHO05D008941 3.1e-61 239.6 275 64.4
ClCG01G003790 Citrullus lanatus HOM05D007062 ORTHO05D008941 4.1e-61 239.2 283 72.1
PGR031G1282 Punica granatum HOM05D007062 ORTHO05D008941 4.1e-61 239.2 271 64.6
RcHm_v2.0_Chr7g0202221 Rosa chinensis HOM05D007062 ORTHO05D008941 9.2e-61 238.0 286 72.7
MELO3C005562.2 Cucumis melo HOM05D007062 ORTHO05D008941 1.2e-60 237.7 283 71.0
Sp1g10870 Schrenkiella parvula HOM05D007062 ORTHO05D008941 1.2e-60 237.7 283 73.1
Thhalv10008422m.g Eutrema salsugineum HOM05D007062 ORTHO05D008941 1.6e-60 237.3 283 73.1
BolC8t52291H Brassica oleracea HOM05D007062 ORTHO05D008941 2.0e-60 236.9 284 72.9
Potri.003G112900 Populus trichocarpa HOM05D007062 ORTHO05D008941 2.0e-60 236.9 277 69.0
CsaV3_5G003940 Cucumis sativus L. HOM05D007062 ORTHO05D008941 2.7e-60 236.5 278 71.2
Ciclev10021545m.g Citrus clementina HOM05D007062 ORTHO05D008941 4.5e-60 235.7 286 72.7
Duzib205G0297 Durio zibethinus HOM05D007062 ORTHO05D008941 4.5e-60 235.7 284 72.2
Aqoxy5G03933 Aquilegia oxysepala HOM05D007062 ORTHO05D008941 7.7e-60 235.0 282 72.7
BcaC07g41714 Brassica carinata HOM05D007062 ORTHO05D008941 2.9e-59 233.0 284 72.2
PSO782G2909 Papaver somniferum HOM05D007062 ORTHO05D008941 2.9e-59 233.0 283 70.0
THA.LOC104818475 Tarenaya hassleriana HOM05D007062 ORTHO05D008941 2.9e-59 233.0 286 68.5
Zm00001eb248670 Zea mays HOM05D007062 ORTHO05D008941 2.9e-59 233.0 225 82.2
BcaC07g42568 Brassica carinata HOM05D007062 ORTHO05D008941 3.8e-59 232.6 282 72.3
Cc08_g12960 Coffea canephora HOM05D007062 ORTHO05D008941 3.8e-59 232.6 244 78.7
PSO063G0503 Papaver somniferum HOM05D007062 ORTHO05D008941 3.8e-59 232.6 274 72.6
BraA09t41747Z Brassica rapa HOM05D007062 ORTHO05D008941 6.6e-59 231.9 284 72.2
CANSAT21G0465 Cannabis sativa HOM05D007062 ORTHO05D008941 6.6e-59 231.9 269 74.7
FAN08G1089 Fragaria x ananassa HOM05D007062 ORTHO05D008941 6.6e-59 231.9 218 87.6
FAN18G0001 Fragaria x ananassa HOM05D007062 ORTHO05D008941 6.6e-59 231.9 218 87.6
C08p47500 Brassica napus HOM05D007062 ORTHO05D008941 8.6e-59 231.5 283 72.8
A09p63980 Brassica napus HOM05D007062 ORTHO05D008941 1.1e-58 231.1 283 72.1
FvH4_5g00330 Fragaria vesca HOM05D007062 ORTHO05D008941 1.1e-58 231.1 282 72.0
Sc06g0007370 Simmondsia chinensis HOM05D007062 ORTHO05D008941 1.1e-58 231.1 217 85.3
Eucgr.D02028 Eucalyptus grandis HOM05D007062 ORTHO05D008941 2.5e-58 229.9 259 60.2
TWI60G0310 Tripterygium wilfordii HOM05D007062 ORTHO05D008941 2.5e-58 229.9 282 72.0
MD06G1065500 Malus domestica HOM05D007062 ORTHO05D008941 4.3e-58 229.2 280 73.6
Ah.02g116970 Amaranthus hybridus HOM05D007062 ORTHO05D008941 5.6e-58 228.8 292 70.5
Gohir.D08G190800 Gossypium hirsutum HOM05D007062 ORTHO05D008941 1.6e-57 227.3 283 65.0
HPP92_003260 Vanilla planifolia HOM05D007062 ORTHO05D008941 2.8e-57 226.5 221 83.7
Carub.0001s1193 Capsella rubella HOM05D007062 ORTHO05D008941 4.7e-57 225.7 282 71.3
HanXRQChr02g0049591 Helianthus annuus HOM05D007062 ORTHO05D008941 4.7e-57 225.7 312 67.3
SGA_v2.0_scaffold120G32845 Striga asiatica HOM05D007062 ORTHO05D008941 4.7e-57 225.7 256 77.3
Thecc.03G257500 Theobroma cacao HOM05D007062 ORTHO05D008941 6.1e-57 225.3 290 64.1
Aa31LG1G2430 Aethionema arabicum HOM05D007062 ORTHO05D008941 8.0e-57 224.9 291 59.8
Gorai.004G200900 Gossypium raimondii HOM05D007062 ORTHO05D008941 1.0e-56 224.6 284 61.6
AL1G23540 Arabidopsis lyrata HOM05D007062 ORTHO05D008941 4.0e-56 222.6 283 68.9
vmacro05405 Vaccinium macrocarpon HOM05D007062 ORTHO05D008941 5.2e-56 222.2 194 88.1
FAN04G1528 Fragaria x ananassa HOM05D007062 ORTHO05D008941 8.9e-56 221.5 254 56.7
AT1G12250 Arabidopsis thaliana HOM05D007062 ORTHO05D008941 2.6e-55 219.9 280 68.9
EL10Ac5g13006 Beta vulgaris HOM05D007062 ORTHO05D008941 3.7e-54 216.1 273 56.4
Os02g0643500 Oryza sativa ssp. japonica HOM05D007062 ORTHO05D008941 3.7e-54 216.1 213 72.8
SEGI_22381 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 7.0e-53 211.8 226 79.6
Glyma.01G211100 Glycine max HOM05D007062 ORTHO05D008941 1.2e-52 211.1 239 58.2
ATR0568G204 Amborella trichopoda HOM05D007062 ORTHO05D008941 1.6e-52 210.7 194 88.7
Sabra03G0078200 Salix brachista HOM05D007062 ORTHO05D008941 1.3e-51 207.6 362 42.0
AUR62007471 Chenopodium quinoa HOM05D007062 ORTHO05D008941 6.2e-49 198.7 181 84.5
Mapoly0083s0077 Marchantia polymorpha HOM05D007062 ORTHO05D008941 5.2e-48 195.7 237 61.6
CBR_g19734 Chara braunii HOM05D007062 ORTHO05D008941 8.9e-48 194.9 210 66.2
Gohir.A08G172400 Gossypium hirsutum HOM05D007062 ORTHO05D008941 8.9e-48 194.9 191 73.8
SMO137G0193 Selaginella moellendorffii HOM05D007062 ORTHO05D008941 1.7e-46 190.7 217 65.4
Pp3c21_17930 Physcomitrium patens HOM05D007062 ORTHO05D008941 1.7e-43 180.6 209 75.1
FAN13G1422 Fragaria x ananassa HOM05D007062 ORTHO05D008941 2.3e-40 170.2 217 52.5
Hma1.2p1_1691F.1_g297810 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 9.8e-39 164.9 87 88.5
Psat2g178680 Pisum sativum HOM05D007062 ORTHO05D008941 2.2e-38 163.7 208 80.3
Hma1.2p1_1691F.1_g297800 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 1.4e-37 161.0 85 88.2
AUR62039929 Chenopodium quinoa HOM05D007062 ORTHO05D008941 3.2e-37 159.8 87 86.2
AUR62043761 Chenopodium quinoa HOM05D007062 ORTHO05D008941 3.2e-37 159.8 87 86.2
COL.COLO4_37223 Corchorus olitorius HOM05D007062 ORTHO05D008941 5.4e-37 159.1 87 83.9
DCAR_004919 Daucus carota HOM05D007062 ORTHO05D008941 1.7e-35 154.1 86 84.9
CDE04G1356 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 3.9e-35 152.9 83 85.5
CARHR012560 Cardamine hirsuta HOM05D007062 ORTHO05D008941 9.5e-34 148.3 82 84.1
Cfa012777 Carpinus fangiana HOM05D007062 ORTHO05D008941 1.2e-31 141.4 213 76.5
Dinv39100 Davidia involucrata HOM05D007062 ORTHO05D008941 3.4e-31 139.8 188 54.3
Nn6g34047 Nelumbo nucifera HOM05D007062 ORTHO05D008941 1.2e-25 121.3 120 58.3
AagrBONN_evm.TU.Sc2ySwM_228.1920 Anthoceros agrestis HOM05D000741 ORTHO05D000506 2.8e-25 120.2 181 64.6
GSVIVG01001268001 Vitis vinifera HOM05D007062 ORTHO05D008941 3.4e-23 113.2 127 54.3
Haze_08582 Corylus avellana HOM05D007062 ORTHO05D008941 4.4e-23 112.8 142 60.6
CDE04G0607 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 6.0e-20 102.4 68 75.0
CAN.G1293.1 Capsicum annuum HOM05D007062 ORTHO05D008941 5.3e-16 89.4 59 74.6
COL.COLO4_37221 Corchorus olitorius HOM05D007062 ORTHO05D008941 5.8e-15 85.9 62 69.4
Cre17.g721700 Chlamydomonas reinhardtii HOM05D007062 ORTHO05D008941 9.9e-15 85.1 190 47.4
Lj8A257G61 Lonicera japonica HOM05D007062 ORTHO05D008941 2.4e-13 80.5 45 86.7
MCO12G419 Micromonas commoda HOM05D007062 ORTHO05D008941 4.8e-09 66.2 42 71.4
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 1.1e-08 65.1 93 46.2
SEGI_25676 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 1.2e-07 61.6 48 66.7
MCO04G309 Micromonas commoda HOM05D007062 ORTHO05D008941 1.5e-07 61.2 53 56.6


User provided reference genes

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