Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 0.0e+00 1776.1 919 100.0
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 0.0e+00 1357.0 923 78.0
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 0.0e+00 1351.7 927 77.6
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 0.0e+00 1297.0 925 74.8
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 0.0e+00 1295.4 923 74.4
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 0.0e+00 1275.4 923 73.5
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 0.0e+00 1274.2 925 73.7
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 0.0e+00 1238.4 935 72.1
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 0.0e+00 1194.1 994 67.2
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 0.0e+00 1189.1 929 70.4
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.2e-281 973.4 664 78.3
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 4.7e-265 918.3 952 56.8
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 1.1e-253 880.6 1001 52.9
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 2.7e-252 875.9 886 55.3
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 1.1e-250 870.5 929 54.5
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 2.5e-250 869.4 952 54.5
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 1.0e-248 864.0 948 54.4
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 2.0e-247 859.8 949 52.3
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 1.4e-245 853.6 956 53.6
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 6.5e-243 844.7 949 52.3
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 1.9e-242 843.2 954 53.2
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 7.2e-242 841.3 949 52.5
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 4.9e-238 828.6 941 53.0
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 2.7e-236 822.8 942 52.0
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 2.3e-235 819.7 949 52.3
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 5.0e-235 818.5 947 51.3
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.6e-233 813.5 942 51.5
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 6.1e-233 811.6 939 53.0
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 6.1e-233 811.6 939 51.7
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 8.0e-233 811.2 954 51.5
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.2e-231 807.4 947 50.9
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 5.7e-231 805.1 951 51.5
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.3e-230 803.9 945 50.8
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 2.2e-230 803.1 947 50.8
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 8.3e-230 801.2 951 51.3
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 9.2e-229 797.7 927 52.2
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 1.6e-228 797.0 957 49.3
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.3e-227 793.9 950 51.1
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 1.7e-227 793.5 1004 49.0
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 5.0e-227 792.0 952 50.1
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 1.6e-225 786.9 945 50.2
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 6.2e-225 785.0 924 51.2
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.9e-221 773.5 957 47.8
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 4.1e-221 772.3 951 49.9
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 9.2e-221 771.2 947 49.4
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.3e-219 767.3 955 48.1
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 9.5e-218 761.1 929 48.8
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 5.8e-215 751.9 953 47.5
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 5.2e-208 728.8 905 50.5
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 9.9e-207 724.5 664 61.3
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.3e-203 714.1 853 48.9
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 2.3e-203 713.4 931 49.0
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 1.1e-202 711.1 928 48.0
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 1.9e-202 710.3 941 47.3
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 1.4e-200 704.1 979 47.3
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 1.8e-200 703.7 875 50.3
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 3.8e-198 696.0 903 49.2
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 6.4e-198 695.3 902 46.5
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.1e-197 694.5 902 46.9
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 5.4e-197 692.2 900 45.9
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 6.6e-195 685.3 922 47.6
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.1e-194 684.5 918 46.8
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 1.9e-194 683.7 978 47.2
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 2.8e-193 679.9 974 47.0
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 4.0e-192 676.0 895 47.0
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 2.6e-191 673.3 945 45.8
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 2.2e-190 670.2 942 46.5
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 1.4e-189 667.5 881 47.6
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 5.4e-189 665.6 792 51.9
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 5.4e-189 665.6 953 46.8
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 1.2e-188 664.5 915 45.7
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 2.7e-188 663.3 884 47.7
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 3.9e-187 659.4 948 46.3
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 2.5e-186 656.8 872 48.2
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 2.5e-186 656.8 884 48.0
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 4.0e-184 649.4 936 44.3
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 5.3e-184 649.0 839 46.2
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 3.2e-181 639.8 888 46.8
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 4.2e-181 639.4 839 45.9
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.1e-180 637.1 942 45.2
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 3.9e-179 632.9 914 45.2
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 1.5e-178 630.9 911 45.2
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.3e-177 627.9 892 46.2
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 1.6e-177 627.5 943 44.3
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 4.0e-176 622.9 947 44.6
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 5.3e-176 622.5 917 44.5
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 5.3e-176 622.5 910 44.6
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 6.5e-174 615.5 903 45.7
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 1.4e-173 614.4 981 43.2
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 6.7e-171 605.5 932 44.1
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 8.7e-171 605.1 894 44.2
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 3.7e-169 599.7 899 44.5
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 1.8e-168 597.4 930 44.5
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 5.0e-166 589.3 921 43.1
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 5.0e-166 589.3 926 44.2
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 1.9e-165 587.4 879 45.6
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 5.5e-165 585.9 980 42.9
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 1.1e-162 578.2 868 44.0
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 1.5e-162 577.8 600 55.7
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 3.3e-162 576.6 887 42.6
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 9.1e-160 568.5 935 41.9
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 7.7e-159 565.5 912 43.0
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 9.4e-157 558.5 930 41.4
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 3.6e-156 556.6 913 42.7
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 4.7e-156 556.2 860 44.0
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 1.4e-155 554.7 917 41.1
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 3.0e-155 553.5 920 41.4
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 3.9e-155 553.1 898 44.8
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 2.6e-154 550.4 916 43.2
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 2.6e-154 550.4 858 43.9
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 4.4e-154 549.7 930 41.6
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 9.7e-154 548.5 905 40.6
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 1.7e-153 547.7 859 43.1
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 3.1e-152 543.5 882 41.4
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 1.4e-147 528.1 915 41.4
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 3.8e-142 510.0 947 40.7
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 5.0e-142 509.6 947 40.5
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 6.5e-142 509.2 957 40.4
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 6.5e-142 509.2 957 40.4
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 3.2e-141 506.9 918 39.8
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 8.2e-137 492.3 902 40.0
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 4.1e-136 490.0 890 40.2
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 7.0e-136 489.2 695 46.6
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 4.5e-135 486.5 945 40.0
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 6.5e-134 482.6 946 39.9
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 8.5e-134 482.3 912 39.7
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 1.5e-133 481.5 937 39.4
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 1.9e-133 481.1 954 39.3
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 7.2e-133 479.2 692 43.4
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 2.1e-132 477.6 952 39.5
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 8.0e-132 475.7 954 39.2
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 1.8e-131 474.6 507 55.4
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 1.1e-128 465.3 964 39.2
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 4.0e-123 446.8 706 43.9
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 5.4e-120 436.4 474 54.2
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 4.5e-119 433.3 776 40.3
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 2.3e-118 431.0 790 39.5
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 1.5e-117 428.3 978 36.9
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 3.4e-114 417.2 804 38.2
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.7e-113 414.8 626 43.9
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 2.0e-111 407.9 863 37.9
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 2.5e-109 401.0 381 59.6
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 3.3e-109 400.6 852 38.6
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 6.4e-97 359.8 264 74.2
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 8.3e-97 359.4 574 42.9
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.2e-96 357.5 445 50.3
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.7e-95 354.4 898 33.1
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 2.8e-92 344.4 652 41.0
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 4.4e-90 337.0 896 33.3
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 4.0e-75 287.3 1017 31.7
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.6e-74 284.6 335 48.7
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 4.2e-72 277.3 851 30.3
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 1.2e-71 275.8 362 48.9
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 6.0e-71 273.5 815 30.2
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 1.6e-68 265.4 287 52.3
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.2e-66 259.2 800 29.6
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 1.5e-61 242.3 278 53.2
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 1.5e-61 242.3 403 41.9
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 1.1e-56 226.1 698 31.8
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 3.5e-55 221.1 316 45.6
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 5.1e-54 217.2 291 46.4
Ca_31040_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.2e-50 206.1 152 71.7
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 3.8e-49 201.1 341 40.5
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 8.2e-44 183.3 224 49.1
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 1.5e-42 179.1 109 77.1
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 9.4e-40 169.9 172 55.2
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.6e-39 169.1 505 28.9
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 2.1e-39 168.7 534 28.8
Ca_29533_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.5e-37 162.5 112 78.6
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.0e-33 149.8 253 41.5
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 2.5e-32 145.2 193 48.7
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 7.2e-32 143.7 123 58.5
Medtr2g449940 Medicago truncatula HOM05D003655 ORTHO05D004065 3.7e-28 131.3 97 71.1
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 2.2e-20 105.5 110 48.2
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 1.1e-16 93.2 114 40.4
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.3e-14 85.5 87 51.7
Atru.chr6.2364 Acer truncatum HOM05D003655 ORTHO05D004065 4.4e-13 81.3 89 66.3
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 2.4e-11 75.5 48 66.7
Peaxi162Scf00417g00004 Petunia axillaris HOM05D003655 ORTHO05D004065 2.4e-11 75.5 143 37.1
Solyc01g058690.1 Solanum lycopersicum HOM05D003655 ORTHO05D004065 5.0e-09 67.8 88 39.8
Sopen01g024690 Solanum pennellii HOM05D000006 ORTHO05D000695 7.2e-08 63.9 124 35.5
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 1.2e-07 63.2 109 32.1


User provided reference genes

Program Settings