Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0024232 Lotus japonicus HOM05D005035 ORTHO05D006141 1.1e-80 303.1 145 100.0
Glyma.13G069100 Glycine max HOM05D005035 ORTHO05D006141 1.5e-69 266.2 145 85.5
Glyma.19G013800 Glycine max HOM05D005035 ORTHO05D006141 2.2e-68 262.3 145 84.1
FvH4_6g50060 Fragaria vesca HOM05D005035 ORTHO05D006141 6.4e-68 260.8 142 86.6
Lalb_Chr21g0319261 Lupinus albus HOM05D005035 ORTHO05D006141 8.3e-68 260.4 146 83.6
Phvul.004G020500 Phaseolus vulgaris HOM05D005035 ORTHO05D006141 1.9e-67 259.2 145 82.8
Ca_04227_v3 Cicer arietinum L. HOM05D005035 ORTHO05D006141 3.2e-67 258.5 145 84.8
TPR.G31460 Trifolium pratense HOM05D005035 ORTHO05D006141 3.2e-67 258.5 145 84.8
Cfa007472 Carpinus fangiana HOM05D005035 ORTHO05D006141 9.2e-67 256.9 148 84.5
Medtr6g008220 Medicago truncatula HOM05D005035 ORTHO05D006141 9.2e-67 256.9 145 83.4
FAN05G0554 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.2e-66 256.5 141 85.1
Lalb_Chr02g0159811 Lupinus albus HOM05D005035 ORTHO05D006141 1.2e-66 256.5 146 83.6
CiPaw.03G034300 Carya illinoinensis HOM05D005035 ORTHO05D006141 6.0e-66 254.2 148 83.1
Prupe.3G278500 Prunus persica HOM05D005035 ORTHO05D006141 7.8e-66 253.8 142 83.8
Lalb_Chr06g0176451 Lupinus albus HOM05D005035 ORTHO05D006141 1.0e-65 253.4 146 80.8
RcHm_v2.0_Chr2g0170331 Rosa chinensis HOM05D005035 ORTHO05D006141 1.7e-65 252.7 142 83.1
CsaV3_5G037480 Cucumis sativus L. HOM05D005035 ORTHO05D006141 3.3e-64 248.4 145 80.7
MELO3C021510.2 Cucumis melo HOM05D005035 ORTHO05D006141 4.3e-64 248.1 145 80.7
MD09G1039900 Malus domestica HOM05D005035 ORTHO05D006141 7.3e-64 247.3 142 81.7
Nn4g22913 Nelumbo nucifera HOM05D005035 ORTHO05D006141 7.3e-64 247.3 147 82.3
PGR083G2790 Punica granatum HOM05D005035 ORTHO05D006141 9.5e-64 246.9 146 81.5
TAR484G0003 Trochodendron aralioides HOM05D005035 ORTHO05D006141 9.5e-64 246.9 145 81.4
TAR629G3150 Trochodendron aralioides HOM05D005035 ORTHO05D006141 9.5e-64 246.9 145 81.4
Eucgr.J02172 Eucalyptus grandis HOM05D005035 ORTHO05D006141 2.8e-63 245.4 146 80.8
Psat1g079560 Pisum sativum HOM05D005035 ORTHO05D006141 3.6e-63 245.0 132 87.1
MD17G1040500 Malus domestica HOM05D005035 ORTHO05D006141 4.7e-63 244.6 142 80.3
MBI14_g12780_MAGBIO Magnolia biondii HOM05D005035 ORTHO05D006141 1.4e-62 243.0 145 77.2
Sc06g0002600 Simmondsia chinensis HOM05D005035 ORTHO05D006141 1.4e-62 243.0 139 81.3
TWI56G1217 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 1.4e-62 243.0 142 81.0
CANSAT21G0423 Cannabis sativa HOM05D005035 ORTHO05D006141 2.3e-62 242.3 146 79.5
TAR371G0568 Trochodendron aralioides HOM05D005035 ORTHO05D006141 4.0e-62 241.5 145 78.6
GSVIVG01032540001 Vitis vinifera HOM05D005035 ORTHO05D006141 4.0e-62 241.5 139 80.6
FAN09G0974 Fragaria x ananassa HOM05D005035 ORTHO05D006141 6.8e-62 240.7 133 84.2
FAN14G3542 Fragaria x ananassa HOM05D005035 ORTHO05D006141 6.8e-62 240.7 133 84.2
Gohir.A07G217600 Gossypium hirsutum HOM05D005035 ORTHO05D006141 4.4e-61 238.0 147 76.9
Manes.17G120300 Manihot esculenta HOM05D005035 ORTHO05D006141 4.4e-61 238.0 135 85.2
MSTRG.3309 Avicennia marina HOM05D005035 ORTHO05D006141 5.8e-61 237.7 135 81.5
TWI36G0797 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 5.8e-61 237.7 143 77.6
FAN02G1276 Fragaria x ananassa HOM05D005035 ORTHO05D006141 7.5e-61 237.3 133 83.5
Manes.15G180500 Manihot esculenta HOM05D005035 ORTHO05D006141 7.5e-61 237.3 151 79.5
Migut.H00159 Erythranthe guttata HOM05D005035 ORTHO05D006141 1.3e-60 236.5 145 78.6
Gohir.D07G224700 Gossypium hirsutum HOM05D005035 ORTHO05D006141 1.3e-60 236.5 147 76.2
vmacro05790 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 1.7e-60 236.1 139 79.1
Ciclev10013034m.g Citrus clementina HOM05D005035 ORTHO05D006141 2.2e-60 235.7 127 85.0
Rhsim10G0028700 Rhododendron simsii HOM05D005035 ORTHO05D006141 2.2e-60 235.7 149 77.2
ClCG00G001700 Citrullus lanatus HOM05D005035 ORTHO05D006141 2.9e-60 235.3 174 67.2
ClCG09G018640 Citrullus lanatus HOM05D005035 ORTHO05D006141 2.9e-60 235.3 174 67.2
QL93p0205_0142 Quercus lobata HOM05D005035 ORTHO05D006141 2.9e-60 235.3 160 73.8
Aqoxy3G00882 Aquilegia oxysepala HOM05D005035 ORTHO05D006141 3.7e-60 235.0 142 76.1
EL10Ac7g18004 Beta vulgaris HOM05D005035 ORTHO05D006141 3.7e-60 235.0 143 78.3
CSS0048749 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 6.4e-60 234.2 131 83.2
Gohir.A09G024500 Gossypium hirsutum HOM05D005035 ORTHO05D006141 8.3e-60 233.8 146 75.3
SGA_v2.0_scaffold30G12503 Striga asiatica HOM05D005035 ORTHO05D006141 8.3e-60 233.8 143 77.6
HanXRQChr17g0548081 Helianthus annuus HOM05D005035 ORTHO05D006141 1.1e-59 233.4 144 75.7
Actinidia33975 Actinidia chinensis HOM05D005035 ORTHO05D006141 1.4e-59 233.0 133 82.7
DCAR_011194 Daucus carota HOM05D005035 ORTHO05D006141 1.4e-59 233.0 146 77.4
Cc07_g02630 Coffea canephora HOM05D005035 ORTHO05D006141 1.9e-59 232.6 144 77.8
Migut.K01356 Erythranthe guttata HOM05D005035 ORTHO05D006141 2.4e-59 232.3 139 77.7
Rhsim10G0028000 Rhododendron simsii HOM05D005035 ORTHO05D006141 2.4e-59 232.3 158 72.8
Lsat_1_v5_gn_0_16560 Lactuca sativa HOM05D005035 ORTHO05D006141 3.2e-59 231.9 144 77.8
Actinidia06042 Actinidia chinensis HOM05D005035 ORTHO05D006141 5.4e-59 231.1 140 78.6
Carub.0003s2630 Capsella rubella HOM05D005035 ORTHO05D006141 5.4e-59 231.1 142 78.2
Potri.001G350900 Populus trichocarpa HOM05D005035 ORTHO05D006141 5.4e-59 231.1 145 75.9
AL3G42320 Arabidopsis lyrata HOM05D005035 ORTHO05D006141 7.1e-59 230.7 142 77.5
PSO591G0214 Papaver somniferum HOM05D005035 ORTHO05D006141 7.1e-59 230.7 146 73.3
Sp2g17120 Schrenkiella parvula HOM05D005035 ORTHO05D006141 7.1e-59 230.7 145 76.6
PSO832G3976 Papaver somniferum HOM05D005035 ORTHO05D006141 1.2e-58 229.9 146 73.3
AT2G04700 Arabidopsis thaliana HOM05D005035 ORTHO05D006141 1.6e-58 229.6 141 75.9
Thhalv10027982m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 1.6e-58 229.6 141 76.6
Thecc.04G003200 Theobroma cacao HOM05D005035 ORTHO05D006141 1.6e-58 229.6 147 74.1
Duzib147G0557 Durio zibethinus HOM05D005035 ORTHO05D006141 2.1e-58 229.2 145 72.4
Nitab4.5_0007185g0060 Nicotiana tabacum HOM05D005035 ORTHO05D006141 2.7e-58 228.8 144 74.3
Sp7g01920 Schrenkiella parvula HOM05D005035 ORTHO05D006141 2.7e-58 228.8 141 76.6
THA.LOC104805419 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 2.7e-58 228.8 145 74.5
ECA246G3539 Erigeron canadensis HOM05D005035 ORTHO05D006141 3.5e-58 228.4 141 78.0
MSTRG.23981 Avicennia marina HOM05D005035 ORTHO05D006141 6.0e-58 227.6 133 81.2
CDE04G0448 Ceratophyllum demersum HOM05D005035 ORTHO05D006141 6.0e-58 227.6 146 74.0
A04p12970 Brassica napus HOM05D005035 ORTHO05D006141 7.8e-58 227.3 141 75.9
Nitab4.5_0001952g0210 Nicotiana tabacum HOM05D005035 ORTHO05D006141 7.8e-58 227.3 144 74.3
SalBow1G8037 Salvia bowleyana HOM05D005035 ORTHO05D006141 7.8e-58 227.3 151 74.8
BcaB06g27429 Brassica carinata HOM05D005035 ORTHO05D006141 1.0e-57 226.9 141 75.2
BraA04t16958Z Brassica rapa HOM05D005035 ORTHO05D006141 1.0e-57 226.9 141 75.2
Thhalv10005082m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 1.0e-57 226.9 143 75.5
Aa31LG9G1530 Aethionema arabicum HOM05D005035 ORTHO05D006141 1.3e-57 226.5 139 77.0
Sed0002098 Sechium edule HOM05D005035 ORTHO05D006141 1.7e-57 226.1 131 80.9
Solyc02g087230.3 Solanum lycopersicum HOM05D005035 ORTHO05D006141 1.7e-57 226.1 145 74.5
Sopen02g031970 Solanum pennellii HOM05D005035 ORTHO05D006141 1.7e-57 226.1 145 74.5
Peaxi162Scf00129g00821 Petunia axillaris HOM05D005035 ORTHO05D006141 2.3e-57 225.7 139 75.5
CAN.G206.60 Capsicum annuum HOM05D005035 ORTHO05D006141 3.0e-57 225.3 143 72.7
Sabra16G0230300 Salix brachista HOM05D005035 ORTHO05D006141 5.1e-57 224.6 120 86.7
BolC4t26254H Brassica oleracea HOM05D005035 ORTHO05D006141 8.6e-57 223.8 143 74.8
AagrBONN_evm.TU.Sc2ySwM_340.374 Anthoceros agrestis HOM05D005035 ORTHO05D006141 6.2e-55 217.6 120 80.8
Hund20034 Selenicereus undatus HOM05D005035 ORTHO05D006141 8.1e-55 217.2 115 84.3
SMO147G0038 Selaginella moellendorffii HOM05D005035 ORTHO05D006141 1.1e-54 216.9 112 85.7
VMungo0464G2121 Vigna mungo HOM05D005035 ORTHO05D006141 1.1e-54 216.9 227 53.3
Lsat_1_v5_gn_4_180660 Lactuca sativa HOM05D005035 ORTHO05D006141 1.4e-54 216.5 137 77.4
HPP92_003737 Vanilla planifolia HOM05D005035 ORTHO05D006141 1.4e-54 216.5 145 69.0
Mapoly0037s0068 Marchantia polymorpha HOM05D005035 ORTHO05D006141 1.8e-54 216.1 117 82.1
Duzib264G0892 Durio zibethinus HOM05D005035 ORTHO05D006141 2.4e-54 215.7 136 75.0
Gorai.001G259100 Gossypium raimondii HOM05D005035 ORTHO05D006141 6.8e-54 214.2 132 75.8
COL.COLO4_06152 Corchorus olitorius HOM05D005035 ORTHO05D006141 1.2e-53 213.4 133 75.2
Hma1.2p1_0375F.1_g139040 Hydrangea macrophylla HOM05D005035 ORTHO05D006141 3.4e-53 211.8 141 70.9
unitig_62.g23432 Utricularia gibba HOM05D005035 ORTHO05D006141 3.4e-53 211.8 117 84.6
Pp3c3_28450 Physcomitrium patens HOM05D005035 ORTHO05D006141 7.6e-53 210.7 114 84.2
unitig_52.g17602 Utricularia gibba HOM05D005035 ORTHO05D006141 3.8e-52 208.4 126 77.8
Pp3c4_19340 Physcomitrium patens HOM05D005035 ORTHO05D006141 1.4e-51 206.5 141 70.2
Os09g0249900 Oryza sativa ssp. japonica HOM05D005035 ORTHO05D006141 2.4e-51 205.7 138 70.3
ATR1101G065 Amborella trichopoda HOM05D005035 ORTHO05D006141 5.4e-51 204.5 128 76.6
Haze_14625 Corylus avellana HOM05D005035 ORTHO05D006141 7.8e-50 200.7 156 69.2
Cre03.g193950 Chlamydomonas reinhardtii HOM05D005035 ORTHO05D006141 1.0e-49 200.3 139 69.1
Zm00001eb373700 Zea mays HOM05D005035 ORTHO05D006141 1.0e-49 200.3 122 73.0
AUR62022118 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.3e-49 199.9 104 84.6
AUR62001211 Chenopodium quinoa HOM05D005035 ORTHO05D006141 3.9e-49 198.4 104 83.7
arahy.Tifrunner.gnm1.ann1.JZED56 Arachis hypogaea HOM05D005035 ORTHO05D006141 1.5e-48 196.4 144 70.1
MCO16G017 Micromonas commoda HOM05D005035 ORTHO05D006141 2.5e-48 195.7 118 72.0
AUR62041855 Chenopodium quinoa HOM05D005035 ORTHO05D006141 3.3e-48 195.3 144 67.4
PRCOL_00001533 Prasinoderma coloniale HOM05D005035 ORTHO05D006141 5.6e-48 194.5 138 67.4
THA.LOC104822811 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 1.1e-46 190.3 105 81.0
CSS0001095 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 3.4e-45 185.3 149 65.8
arahy.Tifrunner.gnm1.ann1.IKM8ZR Arachis hypogaea HOM05D005035 ORTHO05D006141 3.8e-44 181.8 113 80.5
CSS0000898 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 8.4e-44 180.6 153 64.1
CBR_g4436 Chara braunii HOM05D005035 ORTHO05D006141 6.0e-42 174.5 91 81.3
Gorai.006G028000 Gossypium raimondii HOM05D005035 ORTHO05D006141 6.0e-42 174.5 111 75.7
CARHR102650 Cardamine hirsuta HOM05D005035 ORTHO05D006141 8.1e-39 164.1 107 73.8
QL02p078168 Quercus lobata HOM05D005035 ORTHO05D006141 1.4e-38 163.3 78 89.7
SEGI_15320 Sequoiadendron giganteum HOM05D005035 ORTHO05D006141 9.0e-38 160.6 89 84.3
Atru.chr8.2413 Acer truncatum HOM05D005035 ORTHO05D006141 7.6e-37 157.5 152 56.6
Nn3g17009 Nelumbo nucifera HOM05D005035 ORTHO05D006141 1.2e-34 150.2 99 74.7
AUR62032082 Chenopodium quinoa HOM05D005035 ORTHO05D006141 6.0e-34 147.9 84 79.8
AUR62026990 Chenopodium quinoa HOM05D005035 ORTHO05D006141 3.4e-29 132.1 104 62.5
C04p46660 Brassica napus HOM05D005035 ORTHO05D006141 6.0e-26 121.3 61 83.6
Gohir.D09G023800 Gossypium hirsutum HOM05D005035 ORTHO05D006141 1.0e-25 120.6 86 70.9
Rhsim08G0061500 Rhododendron simsii HOM05D005035 ORTHO05D006141 2.5e-24 115.9 142 43.7
BcaC04g21225 Brassica carinata HOM05D005035 ORTHO05D006141 2.1e-18 96.3 52 82.7
Oeu031509.1 Olea europaea HOM05D005035 ORTHO05D006141 4.6e-18 95.1 43 88.4
BcaB02g11482 Brassica carinata HOM05D005035 ORTHO05D006141 2.3e-17 92.8 48 77.1
QL02p078176 Quercus lobata HOM05D005035 ORTHO05D006141 6.7e-17 91.3 65 75.4
vmacro18227 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 2.2e-15 86.3 64 73.4
CSS0035672 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 3.1e-14 82.4 52 69.2
CARHR102660 Cardamine hirsuta HOM05D005035 ORTHO05D006141 5.5e-11 71.6 42 76.2
Nn1g06334 Nelumbo nucifera HOM05D005035 ORTHO05D006141 5.5e-11 71.6 38 89.5
CSS0020716 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 9.4e-11 70.9 40 72.5
CSS0048463 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 2.3e-09 66.2 49 65.3
Dinv33674 Davidia involucrata HOM05D005035 ORTHO05D006141 6.3e-07 58.2 46 63.0


User provided reference genes

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